Wall clock time and date at job start Tue Mar 31 2020 06:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34233 * 116.99925 * 2 1 4 4 O 1.20824 * 119.99817 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99843 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47512 * 180.02562 * 5 3 2 7 7 C 1.36933 * 120.00054 * 270.00666 * 6 5 3 8 8 H 1.08003 * 119.99753 * 188.55650 * 7 6 5 9 9 C 1.38810 * 119.99959 * 8.55174 * 7 6 5 10 10 N 1.31615 * 120.00326 * 24.80404 * 9 7 6 11 11 Si 1.86801 * 119.99853 * 204.80568 * 9 7 6 12 12 H 1.48501 * 109.47205 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47347 * 120.00366 * 11 9 7 14 14 H 1.48505 * 109.46940 * 240.00146 * 11 9 7 15 15 C 1.46503 * 119.99528 * 89.99464 * 6 5 3 16 16 C 1.53003 * 109.46695 * 92.16672 * 15 6 5 17 17 C 1.52998 * 109.47403 * 179.97438 * 16 15 6 18 18 C 1.50697 * 109.47627 * 179.97438 * 17 16 15 19 19 C 1.38254 * 120.00060 * 270.21622 * 18 17 16 20 20 C 1.38211 * 120.00157 * 180.25270 * 19 18 17 21 21 C 1.38260 * 119.99603 * 359.50603 * 20 19 18 22 22 C 1.38211 * 120.00156 * 0.28046 * 21 20 19 23 23 C 1.50700 * 120.00015 * 179.97438 * 22 21 20 24 24 C 1.38218 * 119.99791 * 89.99548 * 18 17 16 25 25 H 1.09001 * 109.46998 * 59.99822 * 1 2 3 26 26 H 1.08996 * 109.46891 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46969 * 300.00125 * 1 2 3 28 28 H 1.09008 * 109.47310 * 60.00273 * 5 3 2 29 29 H 1.09004 * 109.47506 * 300.00305 * 5 3 2 30 30 H 0.96996 * 120.00199 * 179.97438 * 10 9 7 31 31 H 1.08993 * 109.47513 * 332.16321 * 15 6 5 32 32 H 1.08998 * 109.46733 * 212.16002 * 15 6 5 33 33 H 1.09005 * 109.47263 * 59.99207 * 16 15 6 34 34 H 1.09005 * 109.47057 * 299.99559 * 16 15 6 35 35 H 1.08997 * 109.47308 * 59.99176 * 17 16 15 36 36 H 1.09005 * 109.46841 * 299.99920 * 17 16 15 37 37 H 1.08002 * 120.00200 * 0.03486 * 19 18 17 38 38 H 1.07994 * 120.00553 * 179.77869 * 20 19 18 39 39 H 1.08002 * 119.99992 * 180.25136 * 21 20 19 40 40 H 1.08996 * 109.47114 * 89.99326 * 23 22 21 41 41 H 1.08993 * 109.47477 * 210.00028 * 23 22 21 42 42 H 1.08999 * 109.47128 * 330.00060 * 23 22 21 43 43 H 1.07996 * 120.00223 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.1763 3.3366 -1.1846 8 1 4.6135 4.3242 -1.1893 9 6 3.8116 2.7332 -2.3803 10 7 2.8762 1.8075 -2.3918 11 14 4.6487 3.2351 -3.9730 12 1 5.6570 4.2884 -3.6918 13 1 5.3200 2.0541 -4.5730 14 1 3.6341 3.7622 -4.9207 15 6 4.1889 3.3818 1.2701 16 6 5.6568 3.2626 1.6851 17 6 5.8734 3.9963 3.0101 18 6 7.3190 3.8784 3.4193 19 6 7.7316 2.8157 4.2015 20 6 9.0564 2.7104 4.5810 21 6 9.9710 3.6623 4.1700 22 6 9.5593 4.7223 3.3843 23 6 10.5561 5.7601 2.9368 24 6 8.2332 4.8303 3.0087 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 3.9564 0.7806 -0.8892 29 1 3.9558 0.7809 0.8908 30 1 2.6211 1.3861 -3.2274 31 1 3.5568 2.9373 2.0387 32 1 3.9296 4.4336 1.1499 33 1 6.2890 3.7071 0.9164 34 1 5.9161 2.2107 1.8053 35 1 5.2412 3.5522 3.7790 36 1 5.6142 5.0482 2.8896 37 1 7.0180 2.0697 4.5189 38 1 9.3780 1.8822 5.1950 39 1 11.0070 3.5778 4.4632 40 1 10.9908 5.4592 1.9836 41 1 10.0535 6.7202 2.8200 42 1 11.3453 5.8516 3.6831 43 1 7.9115 5.6587 2.3950 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181135757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:20 Heat of formation + Delta-G solvation = -51.428699 kcal Electronic energy + Delta-G solvation = -22963.181829 eV Core-core repulsion = 19587.795753 eV Total energy + Delta-G solvation = -3375.386076 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.41032 -38.88537 -36.35377 -34.85183 -34.03228 -32.41241 -31.40036 -29.69499 -27.96352 -26.92396 -25.99588 -25.56431 -22.88421 -21.89316 -20.81644 -20.08386 -19.58872 -16.91110 -16.41490 -16.19560 -15.50245 -15.45092 -15.03491 -14.86529 -14.58160 -14.08843 -13.86405 -13.65979 -13.19772 -13.05200 -12.95788 -12.64101 -12.33672 -12.29506 -12.10001 -11.63608 -11.48789 -11.17698 -11.13215 -11.06515 -10.87546 -10.75623 -10.65857 -10.40030 -10.18016 -9.88768 -9.87104 -9.56862 -9.08999 -8.69795 -8.53225 -8.42030 -7.06445 -5.90647 -3.16469 1.43152 1.47124 3.37068 3.45331 3.47677 3.81566 3.92175 4.09619 4.49871 4.81571 4.84360 4.96559 5.18142 5.26755 5.31970 5.37856 5.42107 5.52376 5.58778 5.70755 5.75978 5.82974 5.87940 5.88969 5.97140 6.04032 6.12937 6.20955 6.24762 6.32955 6.35907 6.47737 6.54242 6.62867 6.69989 6.73188 6.90227 7.02231 7.10515 7.16544 7.70632 7.82512 8.19070 9.05221 9.43567 9.75563 10.16364 11.21084 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.003918 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.221931 B = 7144.898462 C = 8475.639816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.383 6.383 3 C 0.467 3.533 4 O -0.510 6.510 5 C 0.189 3.811 6 N -0.570 5.570 7 C -0.247 4.247 8 H 0.081 0.919 9 C -0.002 4.002 10 N -0.905 5.905 11 Si 0.905 3.095 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.293 1.293 15 C 0.150 3.850 16 C -0.127 4.127 17 C -0.082 4.082 18 C -0.064 4.064 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.134 4.134 22 C -0.087 4.087 23 C -0.113 4.113 24 C -0.119 4.119 25 H 0.052 0.948 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.113 0.887 29 H 0.051 0.949 30 H 0.256 0.744 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.465 0.569 12.285 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.301 6.301 3 C 0.307 3.693 4 O -0.395 6.395 5 C 0.060 3.940 6 N -0.289 5.289 7 C -0.375 4.375 8 H 0.099 0.901 9 C -0.199 4.199 10 N -0.551 5.551 11 Si 0.735 3.265 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.220 1.220 15 C 0.023 3.977 16 C -0.167 4.167 17 C -0.120 4.120 18 C -0.064 4.064 19 C -0.143 4.143 20 C -0.134 4.134 21 C -0.152 4.152 22 C -0.087 4.087 23 C -0.170 4.170 24 C -0.137 4.137 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.131 0.869 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.176 0.838 12.129 15.232 hybrid contribution -0.102 0.237 -1.081 1.112 sum 9.074 1.075 11.048 14.337 Atomic orbital electron populations 1.22836 0.80067 1.01190 1.01163 1.86555 1.20808 1.36922 1.85790 1.25634 0.93550 0.80123 0.70017 1.90451 1.66700 1.36544 1.45832 1.20464 0.85378 0.86807 1.01394 1.44093 1.75397 1.07530 1.01924 1.19320 1.33994 1.01269 0.82936 0.90069 1.24722 0.97650 0.99555 0.97964 1.69834 1.28171 1.30897 1.26190 0.86165 0.79217 0.77727 0.83381 1.20311 1.21472 1.22017 1.20812 0.92613 0.96663 0.87596 1.22164 1.00250 0.99794 0.94518 1.20660 0.91172 1.01619 0.98586 1.20033 0.96336 0.94163 0.95830 1.21050 0.96008 0.98094 0.99147 1.21080 0.93516 0.98770 1.00075 1.20936 0.99223 0.95211 0.99843 1.19893 0.94612 0.96427 0.97817 1.20779 0.97649 0.97205 1.01386 1.20970 0.92485 0.99697 1.00515 0.92930 0.90233 0.93742 0.86886 0.93108 0.93313 0.94394 0.93340 0.91670 0.92509 0.91364 0.91221 0.86196 0.86420 0.86623 0.91220 0.91616 0.91860 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 10.56 101.05 1.07 1.84 16 2 O -0.38 -8.54 10.57 -39.26 -0.41 -8.96 16 3 C 0.47 11.67 6.02 36.00 0.22 11.89 16 4 O -0.51 -14.37 15.91 -18.75 -0.30 -14.67 16 5 C 0.19 4.47 5.53 -5.20 -0.03 4.45 16 6 N -0.57 -13.89 2.02 -174.61 -0.35 -14.24 16 7 C -0.25 -6.61 9.70 -15.06 -0.15 -6.76 16 8 H 0.08 2.14 7.94 -52.48 -0.42 1.72 16 9 C 0.00 -0.05 4.90 -17.43 -0.09 -0.14 16 10 N -0.90 -25.82 8.96 55.49 0.50 -25.32 16 11 Si 0.91 21.66 29.62 -169.99 -5.04 16.62 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 C 0.15 3.00 5.67 -4.04 -0.02 2.98 16 16 C -0.13 -2.13 5.52 -26.73 -0.15 -2.28 16 17 C -0.08 -1.13 5.34 -27.89 -0.15 -1.28 16 18 C -0.06 -0.85 5.13 -104.62 -0.54 -1.39 16 19 C -0.12 -1.56 9.70 -39.59 -0.38 -1.94 16 20 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 21 C -0.13 -1.50 9.70 -39.58 -0.38 -1.88 16 22 C -0.09 -1.03 5.88 -104.63 -0.62 -1.64 16 23 C -0.11 -1.03 10.01 36.01 0.36 -0.67 16 24 C -0.12 -1.54 9.36 -39.58 -0.37 -1.91 16 25 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 28 H 0.11 2.88 6.30 -51.92 -0.33 2.55 16 29 H 0.05 1.03 8.07 -51.93 -0.42 0.61 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.04 0.73 8.05 -51.93 -0.42 0.31 16 32 H 0.05 1.00 8.06 -51.93 -0.42 0.58 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 36 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 42 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 43 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 361.61 15.07 5.45 5.45 Total: -1.00 -31.98 361.61 -8.82 -40.80 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.04 Total: 0.77 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.62 Total: -0.45 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.14 Total: -39.56 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.71 Total: -23.62 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.04 Total: 16.62 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.98 -8.82 -40.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181135757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.627 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds