Wall clock time and date at job start Tue Mar 31 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34233 * 116.99925 * 2 1 4 4 O 1.20824 * 119.99817 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99843 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.47512 * 180.02562 * 5 3 2 7 7 C 1.36933 * 120.00054 * 270.00666 * 6 5 3 8 8 H 1.08003 * 119.99753 * 188.55650 * 7 6 5 9 9 C 1.38810 * 119.99959 * 8.55174 * 7 6 5 10 10 N 1.31615 * 120.00326 * 24.80404 * 9 7 6 11 11 Si 1.86801 * 119.99853 * 204.80568 * 9 7 6 12 12 H 1.48501 * 109.47205 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47347 * 120.00366 * 11 9 7 14 14 H 1.48505 * 109.46940 * 240.00146 * 11 9 7 15 15 C 1.46503 * 119.99528 * 89.99464 * 6 5 3 16 16 C 1.53003 * 109.46695 * 92.16672 * 15 6 5 17 17 C 1.52998 * 109.47403 * 179.97438 * 16 15 6 18 18 C 1.50697 * 109.47627 * 179.97438 * 17 16 15 19 19 C 1.38254 * 120.00060 * 270.21622 * 18 17 16 20 20 C 1.38211 * 120.00157 * 180.25270 * 19 18 17 21 21 C 1.38260 * 119.99603 * 359.50603 * 20 19 18 22 22 C 1.38211 * 120.00156 * 0.28046 * 21 20 19 23 23 C 1.50700 * 120.00015 * 179.97438 * 22 21 20 24 24 C 1.38218 * 119.99791 * 89.99548 * 18 17 16 25 25 H 1.09001 * 109.46998 * 59.99822 * 1 2 3 26 26 H 1.08996 * 109.46891 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46969 * 300.00125 * 1 2 3 28 28 H 1.09008 * 109.47310 * 60.00273 * 5 3 2 29 29 H 1.09004 * 109.47506 * 300.00305 * 5 3 2 30 30 H 0.96996 * 120.00199 * 179.97438 * 10 9 7 31 31 H 1.08993 * 109.47513 * 332.16321 * 15 6 5 32 32 H 1.08998 * 109.46733 * 212.16002 * 15 6 5 33 33 H 1.09005 * 109.47263 * 59.99207 * 16 15 6 34 34 H 1.09005 * 109.47057 * 299.99559 * 16 15 6 35 35 H 1.08997 * 109.47308 * 59.99176 * 17 16 15 36 36 H 1.09005 * 109.46841 * 299.99920 * 17 16 15 37 37 H 1.08002 * 120.00200 * 0.03486 * 19 18 17 38 38 H 1.07994 * 120.00553 * 179.77869 * 20 19 18 39 39 H 1.08002 * 119.99992 * 180.25136 * 21 20 19 40 40 H 1.08996 * 109.47114 * 89.99326 * 23 22 21 41 41 H 1.08993 * 109.47477 * 210.00028 * 23 22 21 42 42 H 1.08999 * 109.47128 * 330.00060 * 23 22 21 43 43 H 1.07996 * 120.00223 * 0.02562 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9818 2.6797 0.0011 7 6 4.1763 3.3366 -1.1846 8 1 4.6135 4.3242 -1.1893 9 6 3.8116 2.7332 -2.3803 10 7 2.8762 1.8075 -2.3918 11 14 4.6487 3.2351 -3.9730 12 1 5.6570 4.2884 -3.6918 13 1 5.3200 2.0541 -4.5730 14 1 3.6341 3.7622 -4.9207 15 6 4.1889 3.3818 1.2701 16 6 5.6568 3.2626 1.6851 17 6 5.8734 3.9963 3.0101 18 6 7.3190 3.8784 3.4193 19 6 7.7316 2.8157 4.2015 20 6 9.0564 2.7104 4.5810 21 6 9.9710 3.6623 4.1700 22 6 9.5593 4.7223 3.3843 23 6 10.5561 5.7601 2.9368 24 6 8.2332 4.8303 3.0087 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 3.9564 0.7806 -0.8892 29 1 3.9558 0.7809 0.8908 30 1 2.6211 1.3861 -3.2274 31 1 3.5568 2.9373 2.0387 32 1 3.9296 4.4336 1.1499 33 1 6.2890 3.7071 0.9164 34 1 5.9161 2.2107 1.8053 35 1 5.2412 3.5522 3.7790 36 1 5.6142 5.0482 2.8896 37 1 7.0180 2.0697 4.5189 38 1 9.3780 1.8822 5.1950 39 1 11.0070 3.5778 4.4632 40 1 10.9908 5.4592 1.9836 41 1 10.0535 6.7202 2.8200 42 1 11.3453 5.8516 3.6831 43 1 7.9115 5.6587 2.3950 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181135757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:19 Heat of formation + Delta-G solvation = -66.593851 kcal Electronic energy + Delta-G solvation = -22963.839439 eV Core-core repulsion = 19587.795753 eV Total energy + Delta-G solvation = -3376.043687 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.78954 -40.30754 -38.07721 -36.62229 -35.46839 -33.58690 -32.88710 -31.11454 -29.65176 -27.78236 -27.65541 -27.05884 -24.44002 -22.88428 -22.36273 -21.44586 -21.09224 -18.85033 -18.09780 -17.41428 -17.17581 -16.86019 -16.54342 -16.51104 -15.78501 -15.60154 -15.31211 -14.79709 -14.56166 -14.36457 -14.09170 -13.92146 -13.82546 -13.51599 -13.35134 -13.06077 -12.83649 -12.76469 -12.66851 -12.53842 -12.34349 -12.20256 -12.06995 -11.88028 -11.79558 -11.65941 -11.39413 -11.34075 -11.03653 -10.51094 -9.62194 -9.41440 -8.98997 -7.96570 -5.23005 0.52405 0.55851 1.45903 1.49018 1.58854 2.00802 2.33251 2.55895 2.90708 3.23746 3.55663 3.90833 3.98068 4.12368 4.24434 4.33398 4.39267 4.46186 4.52430 4.53118 4.55117 4.59721 4.68053 4.70085 4.77852 4.84556 4.87731 4.90824 4.93429 5.04025 5.14114 5.20539 5.27389 5.32405 5.40440 5.59466 5.63421 5.65049 5.75761 5.84920 5.95479 6.20091 6.23016 7.02991 7.50087 7.80677 8.16844 9.13201 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015354 B = 0.003918 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.221931 B = 7144.898462 C = 8475.639816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.386 6.386 3 C 0.469 3.531 4 O -0.550 6.550 5 C 0.188 3.812 6 N -0.585 5.585 7 C -0.252 4.252 8 H 0.079 0.921 9 C -0.051 4.051 10 N -0.930 5.930 11 Si 0.966 3.034 12 H -0.268 1.268 13 H -0.286 1.286 14 H -0.303 1.303 15 C 0.149 3.851 16 C -0.108 4.108 17 C -0.073 4.073 18 C -0.081 4.081 19 C -0.137 4.137 20 C -0.120 4.120 21 C -0.138 4.138 22 C -0.097 4.097 23 C -0.113 4.113 24 C -0.138 4.138 25 H 0.033 0.967 26 H 0.126 0.874 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.249 0.751 31 H 0.046 0.954 32 H 0.037 0.963 33 H 0.046 0.954 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.130 0.870 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.922 0.080 13.547 17.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.302 6.302 3 C 0.311 3.689 4 O -0.438 6.438 5 C 0.059 3.941 6 N -0.305 5.305 7 C -0.381 4.381 8 H 0.097 0.903 9 C -0.246 4.246 10 N -0.578 5.578 11 Si 0.795 3.205 12 H -0.193 1.193 13 H -0.213 1.213 14 H -0.231 1.231 15 C 0.024 3.976 16 C -0.147 4.147 17 C -0.111 4.111 18 C -0.081 4.081 19 C -0.155 4.155 20 C -0.138 4.138 21 C -0.156 4.156 22 C -0.097 4.097 23 C -0.169 4.169 24 C -0.156 4.156 25 H 0.052 0.948 26 H 0.144 0.856 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.148 0.852 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.654 0.343 13.422 17.140 hybrid contribution -0.584 0.362 -1.395 1.555 sum 10.070 0.704 12.027 15.702 Atomic orbital electron populations 1.23154 0.77653 1.04135 1.00641 1.86509 1.23144 1.35419 1.85175 1.25815 0.94081 0.80151 0.68833 1.90423 1.67653 1.37909 1.47843 1.20479 0.84868 0.86757 1.02018 1.44310 1.75613 1.07974 1.02584 1.19561 1.33096 1.01256 0.84199 0.90338 1.25396 0.98300 1.00256 1.00607 1.69977 1.29428 1.32252 1.26160 0.85223 0.78029 0.77492 0.79747 1.19283 1.21274 1.23054 1.20960 0.94802 0.95649 0.86222 1.21874 0.97158 1.00062 0.95641 1.20531 0.92177 1.01330 0.97027 1.20042 0.95939 0.95117 0.97022 1.21268 0.96990 0.98069 0.99203 1.21416 0.93079 0.99432 0.99872 1.21302 1.00479 0.94690 0.99138 1.20236 0.94606 0.97255 0.97623 1.20820 0.97530 0.96590 1.01973 1.21139 0.93356 0.99965 1.01127 0.94849 0.85550 0.92917 0.88889 0.89555 0.94109 0.93580 0.94413 0.93520 0.92507 0.90145 0.91047 0.85214 0.84059 0.84252 0.90919 0.91300 0.90143 0.86250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 10.56 113.37 1.20 2.55 16 2 O -0.39 -16.90 10.57 -51.44 -0.54 -17.45 16 3 C 0.47 23.51 6.02 71.23 0.43 23.94 16 4 O -0.55 -31.37 15.91 21.97 0.35 -31.02 16 5 C 0.19 8.90 5.53 85.63 0.47 9.37 16 6 N -0.59 -28.67 2.02 -706.34 -1.43 -30.10 16 7 C -0.25 -13.64 9.70 84.03 0.82 -12.83 16 8 H 0.08 4.19 7.94 -2.91 -0.02 4.17 16 9 C -0.05 -2.84 4.90 84.86 0.42 -2.43 16 10 N -0.93 -54.00 8.96 21.65 0.19 -53.81 16 11 Si 0.97 45.16 29.62 68.60 2.03 47.19 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 14 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 15 C 0.15 5.96 5.67 86.38 0.49 6.45 16 16 C -0.11 -3.56 5.52 30.59 0.17 -3.39 16 17 C -0.07 -1.93 5.34 29.85 0.16 -1.77 16 18 C -0.08 -2.10 5.13 -19.87 -0.10 -2.20 16 19 C -0.14 -3.20 9.70 22.27 0.22 -2.98 16 20 C -0.12 -2.45 10.05 22.27 0.22 -2.22 16 21 C -0.14 -2.76 9.70 22.27 0.22 -2.55 16 22 C -0.10 -2.13 5.88 -19.87 -0.12 -2.25 16 23 C -0.11 -1.84 10.01 71.24 0.71 -1.13 16 24 C -0.14 -3.48 9.36 22.27 0.21 -3.27 16 25 H 0.03 1.29 8.13 -2.39 -0.02 1.27 16 26 H 0.13 3.23 8.14 -2.39 -0.02 3.21 16 27 H 0.05 1.76 8.13 -2.39 -0.02 1.74 16 28 H 0.09 4.80 6.30 -2.38 -0.02 4.78 16 29 H 0.09 3.38 8.07 -2.39 -0.02 3.36 16 30 H 0.25 14.26 8.31 -92.71 -0.77 13.48 16 31 H 0.05 1.75 8.05 -2.39 -0.02 1.73 16 32 H 0.04 1.57 8.06 -2.39 -0.02 1.55 16 33 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.08 1.92 8.09 -2.39 -0.02 1.90 16 36 H 0.07 1.84 8.09 -2.38 -0.02 1.83 16 37 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 38 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 39 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 42 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 43 H 0.12 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -69.12 361.61 7.08 -62.04 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 0.97 Total: 17.84 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 5.51 Total: 5.31 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -1.23 Total: -83.90 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -0.19 Total: -48.47 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -69.12 7.08 -62.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181135757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.556 kcal (2) G-P(sol) polarization free energy of solvation -69.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds