Wall clock time and date at job start Tue Mar 31 2020 06:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 117.00393 * 2 1 4 4 O 1.20821 * 120.00043 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00286 * 179.97438 * 3 2 1 6 6 N 1.46494 * 109.47067 * 179.97438 * 5 3 2 7 7 C 1.36945 * 120.00244 * 269.99851 * 6 5 3 8 8 H 1.07999 * 119.99751 * 187.79035 * 7 6 5 9 9 C 1.38810 * 119.99715 * 7.79357 * 7 6 5 10 10 N 1.31621 * 120.00003 * 25.58788 * 9 7 6 11 11 Si 1.86799 * 119.99891 * 205.58852 * 9 7 6 12 12 H 1.48498 * 109.47290 * 89.99782 * 11 9 7 13 13 H 1.48500 * 109.47029 * 209.99859 * 11 9 7 14 14 H 1.48498 * 109.47081 * 330.00168 * 11 9 7 15 15 C 1.46501 * 119.99918 * 90.00343 * 6 5 3 16 16 C 1.53001 * 109.47113 * 271.83454 * 15 6 5 17 17 C 1.52995 * 109.47066 * 180.02562 * 16 15 6 18 18 C 1.50701 * 109.47047 * 180.02562 * 17 16 15 19 19 C 1.38242 * 119.99854 * 89.99892 * 18 17 16 20 20 C 1.38237 * 119.99634 * 179.72927 * 19 18 17 21 21 C 1.38238 * 120.00279 * 0.24996 * 20 19 18 22 22 C 1.50700 * 119.99967 * 180.02562 * 21 20 19 23 23 C 1.38239 * 119.99674 * 0.02562 * 21 20 19 24 24 C 1.38230 * 120.00271 * 359.95620 * 23 21 20 25 25 H 1.09005 * 109.46809 * 300.00041 * 1 2 3 26 26 H 1.08996 * 109.47018 * 60.00149 * 1 2 3 27 27 H 1.09000 * 109.47408 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46842 * 60.00010 * 5 3 2 29 29 H 1.08994 * 109.47177 * 300.00289 * 5 3 2 30 30 H 0.97003 * 119.99355 * 179.97438 * 10 9 7 31 31 H 1.09003 * 109.47307 * 151.83693 * 15 6 5 32 32 H 1.08995 * 109.47275 * 31.83418 * 15 6 5 33 33 H 1.08997 * 109.47093 * 59.99603 * 16 15 6 34 34 H 1.09004 * 109.46985 * 299.99937 * 16 15 6 35 35 H 1.08997 * 109.47667 * 59.99736 * 17 16 15 36 36 H 1.09004 * 109.46989 * 299.99717 * 17 16 15 37 37 H 1.08002 * 120.00002 * 359.97438 * 19 18 17 38 38 H 1.08000 * 119.99438 * 180.27910 * 20 19 18 39 39 H 1.08997 * 109.46592 * 90.00035 * 22 21 20 40 40 H 1.08995 * 109.46952 * 209.99901 * 22 21 20 41 41 H 1.08997 * 109.47322 * 330.00251 * 22 21 20 42 42 H 1.08002 * 119.99320 * 179.97438 * 23 21 20 43 43 H 1.08002 * 120.00100 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2092 -0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6796 -0.0002 7 6 4.1765 3.3355 -1.1864 8 1 4.6022 4.3280 -1.1911 9 6 3.8266 2.7245 -2.3828 10 7 2.8910 1.7989 -2.4001 11 14 4.6836 3.2161 -3.9681 12 1 5.8812 2.3614 -4.1690 13 1 3.7515 3.0384 -5.1103 14 1 5.0995 4.6392 -3.8852 15 6 4.1890 3.3828 1.2682 16 6 2.8672 3.9981 1.7321 17 6 3.0838 4.7330 3.0564 18 6 1.7817 5.3385 3.5136 19 6 0.9280 4.6120 4.3226 20 6 -0.2638 5.1695 4.7466 21 6 -0.6043 6.4515 4.3574 22 6 -1.9033 7.0595 4.8202 23 6 0.2468 7.1759 3.5438 24 6 1.4387 6.6185 3.1202 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.9564 0.7804 -0.8892 29 1 3.9558 0.7808 0.8907 30 1 2.6463 1.3723 -3.2362 31 1 4.9282 4.1718 1.1297 32 1 4.5457 2.6787 2.0200 33 1 2.1280 3.2091 1.8706 34 1 2.5106 4.7022 0.9803 35 1 3.8228 5.5220 2.9175 36 1 3.4406 4.0292 3.8084 37 1 1.1939 3.6103 4.6265 38 1 -0.9287 4.6036 5.3822 39 1 -1.7437 7.5837 5.7624 40 1 -2.2630 7.7630 4.0693 41 1 -2.6426 6.2715 4.9635 42 1 -0.0194 8.1773 3.2395 43 1 2.1039 7.1846 2.4849 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181954059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:23 Heat of formation + Delta-G solvation = -50.022017 kcal Electronic energy + Delta-G solvation = -23504.749407 eV Core-core repulsion = 20129.424329 eV Total energy + Delta-G solvation = -3375.325078 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.29785 -38.88092 -36.34151 -34.74207 -34.15801 -31.97362 -30.73924 -30.44541 -28.25517 -27.10238 -25.92447 -24.63623 -22.53628 -22.38644 -20.72757 -20.16427 -19.59399 -16.90697 -16.15744 -15.98194 -15.44314 -15.37947 -15.04447 -14.91761 -14.58682 -14.00059 -13.78645 -13.59146 -13.25302 -13.04480 -12.93424 -12.47883 -12.25494 -12.21810 -12.04573 -11.54774 -11.42376 -11.18608 -11.06083 -11.02020 -10.76211 -10.69574 -10.60207 -10.41223 -10.11840 -9.88975 -9.75592 -9.45460 -8.98883 -8.73452 -8.49104 -8.23137 -7.07696 -5.91055 -3.15776 1.53469 1.59232 3.37817 3.45066 3.46725 3.92997 3.94287 4.11685 4.49984 4.92533 4.93006 5.14089 5.19085 5.28818 5.30512 5.38378 5.53231 5.64324 5.67525 5.77189 5.83680 5.85812 5.89953 5.98339 6.09872 6.11853 6.14609 6.27663 6.34215 6.37471 6.44792 6.51098 6.62654 6.72624 6.76752 6.82214 7.06620 7.12307 7.21457 7.33980 7.71273 7.84867 8.19225 9.04823 9.45886 9.75679 10.16079 11.20588 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015676 B = 0.004380 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.746981 B = 6391.354348 C = 7180.282138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.384 6.384 3 C 0.464 3.536 4 O -0.502 6.502 5 C 0.188 3.812 6 N -0.569 5.569 7 C -0.249 4.249 8 H 0.082 0.918 9 C -0.001 4.001 10 N -0.903 5.903 11 Si 0.907 3.093 12 H -0.287 1.287 13 H -0.294 1.294 14 H -0.280 1.280 15 C 0.146 3.854 16 C -0.128 4.128 17 C -0.083 4.083 18 C -0.069 4.069 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.104 4.104 22 C -0.110 4.110 23 C -0.120 4.120 24 C -0.114 4.114 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.051 0.949 30 H 0.257 0.743 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.117 0.883 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.899 3.369 13.016 13.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.302 6.302 3 C 0.304 3.696 4 O -0.387 6.387 5 C 0.058 3.942 6 N -0.288 5.288 7 C -0.377 4.377 8 H 0.100 0.900 9 C -0.199 4.199 10 N -0.549 5.549 11 Si 0.737 3.263 12 H -0.214 1.214 13 H -0.220 1.220 14 H -0.206 1.206 15 C 0.020 3.980 16 C -0.168 4.168 17 C -0.122 4.122 18 C -0.069 4.069 19 C -0.133 4.133 20 C -0.138 4.138 21 C -0.104 4.104 22 C -0.167 4.167 23 C -0.138 4.138 24 C -0.132 4.132 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.131 0.869 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.135 0.865 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.156 3.626 12.855 13.988 hybrid contribution -0.320 0.341 -1.134 1.227 sum -4.475 3.967 11.721 13.158 Atomic orbital electron populations 1.22823 0.80118 1.01121 1.01126 1.86552 1.20758 1.37053 1.85834 1.25624 0.93559 0.80178 0.70276 1.90462 1.66611 1.36275 1.45337 1.20510 0.85553 0.86756 1.01399 1.44301 1.75279 1.07303 1.01951 1.19327 1.34507 1.01011 0.82888 0.90030 1.24728 0.97634 0.99567 0.97925 1.69862 1.28078 1.30640 1.26306 0.86195 0.79210 0.78044 0.82864 1.21392 1.22048 1.20580 1.20999 0.94686 0.95050 0.87272 1.22280 1.00692 1.00026 0.93781 1.20731 0.93177 0.99494 0.98754 1.20040 0.97037 0.93924 0.95923 1.21020 0.94397 0.99492 0.98411 1.20954 0.97063 0.95063 1.00744 1.19827 0.96760 0.94860 0.98920 1.20738 0.94217 1.00658 1.01077 1.20968 0.94631 0.99603 0.98558 1.21048 0.97003 0.95413 0.99749 0.93790 0.92967 0.90312 0.86862 0.93146 0.93277 0.92897 0.94230 0.91875 0.91832 0.91543 0.91740 0.86352 0.86570 0.91625 0.91816 0.91841 0.86522 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.56 101.05 1.07 1.86 16 2 O -0.38 -8.55 10.56 -39.24 -0.41 -8.97 16 3 C 0.46 11.42 5.89 36.01 0.21 11.63 16 4 O -0.50 -13.72 13.52 -18.75 -0.25 -13.97 16 5 C 0.19 4.40 5.59 -5.19 -0.03 4.37 16 6 N -0.57 -13.77 2.09 -174.61 -0.37 -14.14 16 7 C -0.25 -6.63 9.70 -15.06 -0.15 -6.78 16 8 H 0.08 2.14 7.92 -52.49 -0.42 1.73 16 9 C 0.00 -0.03 4.89 -17.43 -0.09 -0.12 16 10 N -0.90 -25.62 9.01 55.49 0.50 -25.12 16 11 Si 0.91 21.57 29.62 -169.99 -5.04 16.53 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.15 2.91 5.71 -4.04 -0.02 2.89 16 16 C -0.13 -2.50 4.71 -26.73 -0.13 -2.63 16 17 C -0.08 -1.28 5.34 -27.88 -0.15 -1.43 16 18 C -0.07 -1.07 5.13 -104.62 -0.54 -1.61 16 19 C -0.12 -1.69 9.70 -39.58 -0.38 -2.07 16 20 C -0.12 -1.61 9.70 -39.58 -0.38 -2.00 16 21 C -0.10 -1.35 5.88 -104.62 -0.62 -1.96 16 22 C -0.11 -1.08 10.01 36.01 0.36 -0.71 16 23 C -0.12 -1.62 9.70 -39.58 -0.38 -2.01 16 24 C -0.11 -1.70 9.70 -39.58 -0.38 -2.08 16 25 H 0.04 0.77 8.13 -51.93 -0.42 0.35 16 26 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.11 2.87 6.26 -51.93 -0.33 2.54 16 29 H 0.05 1.01 7.91 -51.93 -0.41 0.60 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 31 H 0.05 1.00 8.00 -51.93 -0.42 0.59 16 32 H 0.04 0.70 7.92 -51.93 -0.41 0.28 16 33 H 0.06 1.38 6.39 -51.93 -0.33 1.05 16 34 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 35 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 36 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 37 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 41 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 42 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 356.35 15.07 5.37 5.37 Total: -1.00 -31.56 356.35 -8.74 -40.30 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.93 Total: 2.64 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.61 Total: -2.65 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.13 Total: -39.25 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.67 Total: -22.94 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.04 Total: 16.53 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.56 -8.74 -40.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181954059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.723 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds