Wall clock time and date at job start Tue Mar 31 2020 06:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 117.00393 * 2 1 4 4 O 1.20821 * 120.00043 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00286 * 179.97438 * 3 2 1 6 6 N 1.46494 * 109.47067 * 179.97438 * 5 3 2 7 7 C 1.36945 * 120.00244 * 269.99851 * 6 5 3 8 8 H 1.07999 * 119.99751 * 187.79035 * 7 6 5 9 9 C 1.38810 * 119.99715 * 7.79357 * 7 6 5 10 10 N 1.31621 * 120.00003 * 25.58788 * 9 7 6 11 11 Si 1.86799 * 119.99891 * 205.58852 * 9 7 6 12 12 H 1.48498 * 109.47290 * 89.99782 * 11 9 7 13 13 H 1.48500 * 109.47029 * 209.99859 * 11 9 7 14 14 H 1.48498 * 109.47081 * 330.00168 * 11 9 7 15 15 C 1.46501 * 119.99918 * 90.00343 * 6 5 3 16 16 C 1.53001 * 109.47113 * 271.83454 * 15 6 5 17 17 C 1.52995 * 109.47066 * 180.02562 * 16 15 6 18 18 C 1.50701 * 109.47047 * 180.02562 * 17 16 15 19 19 C 1.38242 * 119.99854 * 89.99892 * 18 17 16 20 20 C 1.38237 * 119.99634 * 179.72927 * 19 18 17 21 21 C 1.38238 * 120.00279 * 0.24996 * 20 19 18 22 22 C 1.50700 * 119.99967 * 180.02562 * 21 20 19 23 23 C 1.38239 * 119.99674 * 0.02562 * 21 20 19 24 24 C 1.38230 * 120.00271 * 359.95620 * 23 21 20 25 25 H 1.09005 * 109.46809 * 300.00041 * 1 2 3 26 26 H 1.08996 * 109.47018 * 60.00149 * 1 2 3 27 27 H 1.09000 * 109.47408 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46842 * 60.00010 * 5 3 2 29 29 H 1.08994 * 109.47177 * 300.00289 * 5 3 2 30 30 H 0.97003 * 119.99355 * 179.97438 * 10 9 7 31 31 H 1.09003 * 109.47307 * 151.83693 * 15 6 5 32 32 H 1.08995 * 109.47275 * 31.83418 * 15 6 5 33 33 H 1.08997 * 109.47093 * 59.99603 * 16 15 6 34 34 H 1.09004 * 109.46985 * 299.99937 * 16 15 6 35 35 H 1.08997 * 109.47667 * 59.99736 * 17 16 15 36 36 H 1.09004 * 109.46989 * 299.99717 * 17 16 15 37 37 H 1.08002 * 120.00002 * 359.97438 * 19 18 17 38 38 H 1.08000 * 119.99438 * 180.27910 * 20 19 18 39 39 H 1.08997 * 109.46592 * 90.00035 * 22 21 20 40 40 H 1.08995 * 109.46952 * 209.99901 * 22 21 20 41 41 H 1.08997 * 109.47322 * 330.00251 * 22 21 20 42 42 H 1.08002 * 119.99320 * 179.97438 * 23 21 20 43 43 H 1.08002 * 120.00100 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2092 -0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6796 -0.0002 7 6 4.1765 3.3355 -1.1864 8 1 4.6022 4.3280 -1.1911 9 6 3.8266 2.7245 -2.3828 10 7 2.8910 1.7989 -2.4001 11 14 4.6836 3.2161 -3.9681 12 1 5.8812 2.3614 -4.1690 13 1 3.7515 3.0384 -5.1103 14 1 5.0995 4.6392 -3.8852 15 6 4.1890 3.3828 1.2682 16 6 2.8672 3.9981 1.7321 17 6 3.0838 4.7330 3.0564 18 6 1.7817 5.3385 3.5136 19 6 0.9280 4.6120 4.3226 20 6 -0.2638 5.1695 4.7466 21 6 -0.6043 6.4515 4.3574 22 6 -1.9033 7.0595 4.8202 23 6 0.2468 7.1759 3.5438 24 6 1.4387 6.6185 3.1202 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.9564 0.7804 -0.8892 29 1 3.9558 0.7808 0.8907 30 1 2.6463 1.3723 -3.2362 31 1 4.9282 4.1718 1.1297 32 1 4.5457 2.6787 2.0200 33 1 2.1280 3.2091 1.8706 34 1 2.5106 4.7022 0.9803 35 1 3.8228 5.5220 2.9175 36 1 3.4406 4.0292 3.8084 37 1 1.1939 3.6103 4.6265 38 1 -0.9287 4.6036 5.3822 39 1 -1.7437 7.5837 5.7624 40 1 -2.2630 7.7630 4.0693 41 1 -2.6426 6.2715 4.9635 42 1 -0.0194 8.1773 3.2395 43 1 2.1039 7.1846 2.4849 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181954059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:23 Heat of formation + Delta-G solvation = -65.233799 kcal Electronic energy + Delta-G solvation = -23505.409039 eV Core-core repulsion = 20129.424329 eV Total energy + Delta-G solvation = -3375.984710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.77779 -40.32893 -38.07360 -36.49316 -35.64720 -33.58858 -31.99922 -31.79387 -29.89222 -28.47406 -27.65130 -26.06031 -23.95793 -23.59780 -22.27506 -21.46816 -21.33974 -18.83914 -18.02313 -17.46463 -16.89683 -16.81870 -16.56839 -16.45423 -15.95768 -15.63099 -15.31007 -14.73531 -14.60288 -14.35418 -14.25666 -13.93749 -13.81304 -13.47984 -13.35320 -13.10892 -12.85924 -12.77020 -12.62870 -12.49726 -12.38503 -12.15636 -12.01895 -11.91610 -11.80352 -11.68135 -11.42603 -11.19845 -10.90488 -10.47941 -9.81110 -9.37317 -8.97399 -7.95682 -5.20759 0.45809 0.51499 1.48411 1.50382 1.58172 2.06536 2.36757 2.57431 2.84862 3.25310 3.57909 3.91901 3.93297 4.12128 4.16861 4.21893 4.38391 4.45344 4.47440 4.53107 4.59482 4.62433 4.65843 4.74060 4.76006 4.83623 4.87045 4.88919 4.93798 5.03551 5.12839 5.19484 5.22568 5.33601 5.37982 5.54632 5.63509 5.70469 5.70526 5.80960 6.00641 6.17142 6.22570 7.04152 7.55142 7.83498 8.18381 9.13962 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015676 B = 0.004380 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.746981 B = 6391.354348 C = 7180.282138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.388 6.388 3 C 0.465 3.535 4 O -0.537 6.537 5 C 0.186 3.814 6 N -0.584 5.584 7 C -0.254 4.254 8 H 0.080 0.920 9 C -0.051 4.051 10 N -0.929 5.929 11 Si 0.967 3.033 12 H -0.280 1.280 13 H -0.305 1.305 14 H -0.274 1.274 15 C 0.142 3.858 16 C -0.107 4.107 17 C -0.071 4.071 18 C -0.094 4.094 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.107 4.107 22 C -0.109 4.109 23 C -0.130 4.130 24 C -0.132 4.132 25 H 0.049 0.951 26 H 0.031 0.969 27 H 0.125 0.875 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.248 0.752 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.036 0.964 34 H 0.020 0.980 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.139 0.861 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.136 0.864 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.008 3.490 14.556 15.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.306 6.306 3 C 0.307 3.693 4 O -0.424 6.424 5 C 0.056 3.944 6 N -0.303 5.303 7 C -0.384 4.384 8 H 0.098 0.902 9 C -0.245 4.245 10 N -0.576 5.576 11 Si 0.797 3.203 12 H -0.206 1.206 13 H -0.233 1.233 14 H -0.199 1.199 15 C 0.016 3.984 16 C -0.147 4.147 17 C -0.109 4.109 18 C -0.094 4.094 19 C -0.147 4.147 20 C -0.147 4.147 21 C -0.107 4.107 22 C -0.165 4.165 23 C -0.148 4.148 24 C -0.150 4.150 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.143 0.857 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.039 0.961 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.144 0.856 38 H 0.157 0.843 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.154 0.846 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.248 3.744 14.425 15.497 hybrid contribution -0.378 0.299 -1.539 1.613 sum -4.625 4.042 12.886 14.275 Atomic orbital electron populations 1.23102 0.77879 1.03957 1.00419 1.86506 1.22932 1.35778 1.85336 1.25787 0.94082 0.80181 0.69256 1.90447 1.67478 1.37487 1.47033 1.20528 0.85054 0.86744 1.02063 1.44495 1.75355 1.07773 1.02653 1.19586 1.33618 1.00968 0.84192 0.90221 1.25401 0.98318 1.00255 1.00571 1.70019 1.29414 1.32049 1.26154 0.85251 0.77944 0.78015 0.79118 1.20627 1.23289 1.19923 1.21223 0.94924 0.95840 0.86365 1.21956 0.99490 0.98406 0.94885 1.20598 0.93825 0.99800 0.96710 1.20150 0.97509 0.94574 0.97181 1.21251 0.94949 0.99938 0.98550 1.21297 0.96980 0.95572 1.00859 1.20275 0.97781 0.94731 0.97960 1.20796 0.92615 1.01118 1.01974 1.21282 0.94297 1.00659 0.98584 1.21254 0.97916 0.95643 1.00183 0.93204 0.94999 0.85688 0.88933 0.89444 0.94223 0.92012 0.91177 0.94489 0.96103 0.90383 0.89759 0.85584 0.84333 0.89961 0.91056 0.90882 0.84597 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.46 10.56 113.37 1.20 2.66 16 2 O -0.39 -17.12 10.56 -51.35 -0.54 -17.66 16 3 C 0.47 23.10 5.89 71.24 0.42 23.52 16 4 O -0.54 -30.03 13.52 21.98 0.30 -29.74 16 5 C 0.19 8.68 5.59 85.64 0.48 9.16 16 6 N -0.58 -28.23 2.09 -706.34 -1.48 -29.71 16 7 C -0.25 -13.68 9.70 84.03 0.81 -12.86 16 8 H 0.08 4.21 7.92 -2.91 -0.02 4.19 16 9 C -0.05 -2.81 4.89 84.86 0.41 -2.39 16 10 N -0.93 -53.82 9.01 21.65 0.20 -53.62 16 11 Si 0.97 44.98 29.62 68.60 2.03 47.01 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 13 H -0.31 -14.67 7.11 99.48 0.71 -13.96 16 14 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 15 C 0.14 5.51 5.71 86.38 0.49 6.01 16 16 C -0.11 -4.24 4.71 30.59 0.14 -4.10 16 17 C -0.07 -2.14 5.34 29.85 0.16 -1.98 16 18 C -0.09 -2.89 5.13 -19.86 -0.10 -3.00 16 19 C -0.13 -3.69 9.70 22.27 0.22 -3.47 16 20 C -0.13 -3.28 9.70 22.27 0.22 -3.06 16 21 C -0.11 -2.62 5.88 -19.86 -0.12 -2.73 16 22 C -0.11 -1.84 10.01 71.24 0.71 -1.12 16 23 C -0.13 -3.41 9.70 22.27 0.22 -3.20 16 24 C -0.13 -3.92 9.70 22.27 0.22 -3.70 16 25 H 0.05 1.72 8.13 -2.38 -0.02 1.70 16 26 H 0.03 1.26 8.13 -2.39 -0.02 1.24 16 27 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 28 H 0.09 4.74 6.26 -2.39 -0.01 4.73 16 29 H 0.09 3.36 7.91 -2.39 -0.02 3.34 16 30 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.06 2.28 8.00 -2.39 -0.02 2.26 16 32 H 0.07 2.30 7.92 -2.39 -0.02 2.28 16 33 H 0.04 1.64 6.39 -2.39 -0.02 1.62 16 34 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.08 2.13 8.09 -2.39 -0.02 2.11 16 36 H 0.08 2.17 8.09 -2.38 -0.02 2.15 16 37 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 38 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 40 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 41 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 42 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 43 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -69.49 356.35 6.96 -62.54 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.97 Total: 21.45 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: 5.48 Total: -0.27 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -1.28 Total: -83.33 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -0.25 Total: -47.40 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -69.49 6.96 -62.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181954059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.697 kcal (2) G-P(sol) polarization free energy of solvation -69.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds