Wall clock time and date at job start Tue Mar 31 2020 06:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38266 * 119.94669 * 2 1 4 4 C 1.38069 * 120.13448 * 180.28058 * 3 2 1 5 5 C 1.39095 * 120.02902 * 359.76060 * 4 3 2 6 6 N 1.39521 * 120.05464 * 180.02562 * 5 4 3 7 7 C 1.34769 * 119.99990 * 324.86335 * 6 5 4 8 8 O 1.21741 * 120.00243 * 4.60479 * 7 6 5 9 9 C 1.46169 * 119.99952 * 184.60418 * 7 6 5 10 10 H 1.08000 * 119.99868 * 359.97438 * 9 7 6 11 11 C 1.40120 * 120.00107 * 180.02562 * 9 7 6 12 12 N 1.30639 * 119.99900 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00145 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46927 * 59.99638 * 13 11 9 15 15 H 1.48500 * 109.47255 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46845 * 299.99565 * 13 11 9 17 17 C 1.38906 * 119.89198 * 359.97438 * 5 4 3 18 18 C 1.38567 * 119.86193 * 359.97438 * 17 5 4 19 19 O 1.35897 * 120.01503 * 180.02562 * 18 17 5 20 20 C 1.42904 * 116.99772 * 0.02562 * 19 18 17 21 21 C 1.53002 * 109.46795 * 179.97438 * 20 19 18 22 22 C 1.53006 * 109.46697 * 179.97438 * 21 20 19 23 23 C 1.53006 * 109.46803 * 175.00215 * 22 21 20 24 24 C 1.53007 * 109.47169 * 294.99763 * 22 21 20 25 25 H 1.09003 * 109.46860 * 270.23328 * 1 2 3 26 26 H 1.09001 * 109.47387 * 30.22987 * 1 2 3 27 27 H 1.09003 * 109.47181 * 150.23298 * 1 2 3 28 28 H 1.08002 * 119.93007 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.98585 * 179.74659 * 4 3 2 30 30 H 0.97006 * 119.99785 * 144.86150 * 6 5 4 31 31 H 0.96997 * 120.00116 * 180.02562 * 12 11 9 32 32 H 1.07997 * 120.07118 * 180.02562 * 17 5 4 33 33 H 1.08997 * 109.47113 * 59.99650 * 20 19 18 34 34 H 1.09003 * 109.46943 * 299.99807 * 20 19 18 35 35 H 1.08993 * 109.47327 * 299.99598 * 21 20 19 36 36 H 1.08997 * 109.47370 * 60.00060 * 21 20 19 37 37 H 1.09001 * 109.47554 * 54.99918 * 22 21 20 38 38 H 1.08990 * 109.47067 * 59.99988 * 23 22 21 39 39 H 1.09003 * 109.46643 * 179.97438 * 23 22 21 40 40 H 1.08992 * 109.46928 * 299.99399 * 23 22 21 41 41 H 1.09001 * 109.47009 * 300.00489 * 24 22 21 42 42 H 1.09003 * 109.46766 * 59.99934 * 24 22 21 43 43 H 1.08998 * 109.47091 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5778 1.2026 -0.0058 5 6 4.2779 0.0006 -0.0067 6 7 5.6731 0.0046 -0.0121 7 6 6.3416 0.9600 -0.6878 8 8 5.7313 1.8670 -1.2235 9 6 7.7996 0.9071 -0.7776 10 1 8.3411 0.1028 -0.3021 11 6 8.4947 1.9007 -1.4797 12 7 7.8397 2.8740 -2.0545 13 14 10.3580 1.8336 -1.5939 14 1 10.7680 0.5708 -2.2589 15 1 10.8475 2.9909 -2.3853 16 1 10.9397 1.8856 -0.2285 17 6 3.5857 -1.2036 -0.0012 18 6 2.2000 -1.2029 0.0058 19 8 1.5196 -2.3793 0.0117 20 6 2.2971 -3.5784 0.0110 21 6 1.3641 -4.7910 0.0189 22 6 2.1965 -6.0748 0.0175 23 6 1.2689 -7.2842 0.1510 24 6 2.9785 -6.1742 -1.2939 25 1 -0.3633 0.0042 1.0277 26 1 -0.3634 0.8879 -0.5174 27 1 -0.3634 -0.8921 -0.5102 28 1 1.6552 2.1322 0.0004 29 1 4.1145 2.1398 -0.0100 30 1 6.1619 -0.6803 0.4706 31 1 8.3209 3.5616 -2.5408 32 1 4.1263 -2.1386 -0.0014 33 1 2.9300 -3.6015 0.8981 34 1 2.9217 -3.6058 -0.8818 35 1 0.7398 -4.7634 0.9119 36 1 0.7309 -4.7680 -0.8680 37 1 2.8933 -6.0570 0.8555 38 1 0.5722 -7.3020 -0.6870 39 1 1.8619 -8.1988 0.1496 40 1 0.7119 -7.2134 1.0852 41 1 2.2817 -6.1920 -2.1319 42 1 3.6393 -5.3126 -1.3890 43 1 3.5711 -7.0890 -1.2951 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186935783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:36 Heat of formation + Delta-G solvation = -79.007188 kcal Electronic energy + Delta-G solvation = -22751.316230 eV Core-core repulsion = 19374.734260 eV Total energy + Delta-G solvation = -3376.581969 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.96018 -38.33062 -37.01476 -36.00288 -33.75459 -32.52764 -30.83368 -30.19772 -28.97005 -27.42078 -26.90546 -25.12599 -23.97005 -21.72614 -21.20292 -20.27289 -19.70796 -17.60963 -17.39402 -16.17112 -15.86298 -15.42534 -15.03724 -14.97615 -14.62124 -14.14009 -14.03152 -13.91948 -13.30267 -13.13548 -12.97795 -12.63189 -12.52478 -12.46865 -12.21395 -11.86660 -11.75598 -11.44887 -11.37713 -11.16899 -11.12993 -10.96282 -10.93023 -10.82582 -10.63316 -10.56002 -10.40447 -10.35732 -9.12680 -8.82310 -7.95065 -7.69624 -6.94982 -6.35592 -4.83603 1.93112 2.11192 3.07670 3.12781 3.14646 3.38114 3.97646 4.24413 4.51528 4.58962 4.61150 4.63475 4.73173 5.01679 5.18440 5.27462 5.33952 5.38673 5.41611 5.48612 5.55156 5.59549 5.64193 5.69865 5.74329 5.79663 5.89738 5.95802 5.98624 6.03447 6.09613 6.13026 6.17378 6.25170 6.53333 6.77947 7.12577 7.16702 7.26035 7.33487 7.69195 7.77371 8.07128 8.17622 8.83458 9.20684 10.37494 10.55590 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.003613 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.315778 B = 7747.724561 C = 9357.935229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.165 4.165 3 C -0.067 4.067 4 C -0.159 4.159 5 C 0.222 3.778 6 N -0.700 5.700 7 C 0.544 3.456 8 O -0.557 6.557 9 C -0.539 4.539 10 H 0.071 0.929 11 C 0.087 3.913 12 N -0.759 5.759 13 Si 0.913 3.087 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.266 1.266 17 C -0.259 4.259 18 C 0.143 3.857 19 O -0.317 6.317 20 C 0.058 3.942 21 C -0.113 4.113 22 C -0.094 4.094 23 C -0.146 4.146 24 C -0.154 4.154 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.122 0.878 29 H 0.144 0.856 30 H 0.392 0.608 31 H 0.273 0.727 32 H 0.120 0.880 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.466 -14.601 4.675 18.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.167 4.167 3 C -0.086 4.086 4 C -0.180 4.180 5 C 0.123 3.877 6 N -0.343 5.343 7 C 0.350 3.650 8 O -0.439 6.439 9 C -0.575 4.575 10 H 0.089 0.911 11 C -0.135 4.135 12 N -0.387 5.387 13 Si 0.737 3.263 14 H -0.191 1.191 15 H -0.204 1.204 16 H -0.191 1.191 17 C -0.281 4.281 18 C 0.097 3.903 19 O -0.231 6.231 20 C -0.017 4.017 21 C -0.150 4.150 22 C -0.113 4.113 23 C -0.203 4.203 24 C -0.211 4.211 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.140 0.860 29 H 0.162 0.838 30 H 0.225 0.775 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.988 -13.775 4.127 18.097 hybrid contribution 1.559 -0.507 0.104 1.642 sum -9.429 -14.283 4.231 17.630 Atomic orbital electron populations 1.20435 0.91450 1.01780 1.01165 1.18996 0.95716 0.90313 1.11696 1.20718 0.93823 0.96201 0.97881 1.21418 0.93423 0.98900 1.04289 1.17703 0.84910 0.92432 0.92687 1.44141 1.02489 1.33484 1.54147 1.18377 0.88508 0.80243 0.77855 1.90622 1.69182 1.34863 1.49239 1.20811 0.89462 1.11427 1.35839 0.91071 1.25740 1.00275 0.94083 0.93376 1.69972 1.36977 1.08550 1.23199 0.86336 0.82351 0.78504 0.79070 1.19148 1.20371 1.19109 1.20871 0.92908 0.97847 1.16475 1.18365 0.89630 0.84863 0.97397 1.85968 1.35704 1.12238 1.89186 1.22805 0.94389 0.83040 1.01472 1.21589 0.98143 0.91830 1.03451 1.21048 0.97330 0.94107 0.98790 1.21817 0.99374 0.97261 1.01845 1.21952 1.00223 1.01994 0.96967 0.92519 0.92447 0.92033 0.86040 0.83846 0.77467 0.91648 0.86177 0.92398 0.91979 0.90981 0.90928 0.90927 0.92566 0.92545 0.92601 0.92471 0.92223 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.27 9.78 36.00 0.35 -0.91 16 2 C -0.17 -2.86 5.90 -104.39 -0.62 -3.47 16 3 C -0.07 -1.24 9.69 -39.63 -0.38 -1.63 16 4 C -0.16 -3.50 8.69 -39.33 -0.34 -3.84 16 5 C 0.22 4.80 6.29 -83.79 -0.53 4.27 16 6 N -0.70 -15.94 5.31 -11.21 -0.06 -16.00 16 7 C 0.54 15.11 7.58 -13.08 -0.10 15.01 16 8 O -0.56 -17.36 12.44 5.15 0.06 -17.30 16 9 C -0.54 -14.71 9.53 -35.69 -0.34 -15.05 16 10 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 11 C 0.09 2.33 5.50 -17.35 -0.10 2.24 16 12 N -0.76 -22.00 11.82 55.55 0.66 -21.35 16 13 Si 0.91 19.44 29.56 -169.99 -5.02 14.42 16 14 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 15 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 16 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 17 C -0.26 -4.78 8.96 -39.21 -0.35 -5.13 16 18 C 0.14 2.50 6.66 -39.24 -0.26 2.24 16 19 O -0.32 -4.85 9.17 -19.42 -0.18 -5.03 16 20 C 0.06 0.71 4.50 37.16 0.17 0.88 16 21 C -0.11 -1.08 5.05 -26.73 -0.14 -1.21 16 22 C -0.09 -0.76 2.92 -90.61 -0.26 -1.03 16 23 C -0.15 -1.01 9.19 37.16 0.34 -0.66 16 24 C -0.15 -1.29 8.95 37.16 0.33 -0.95 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 27 H 0.06 0.83 7.53 -51.93 -0.39 0.44 16 28 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.14 3.56 6.22 -52.49 -0.33 3.23 16 30 H 0.39 7.64 8.80 -40.82 -0.36 7.28 16 31 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 32 H 0.12 1.96 6.29 -52.49 -0.33 1.63 16 33 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 34 H 0.06 0.77 6.08 -51.93 -0.32 0.45 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.55 6.56 -51.93 -0.34 0.20 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -32.42 353.53 -8.09 -40.51 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.65 Total: 8.69 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -2.22 Total: -9.26 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.60 Total: -37.35 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.11 Total: -22.33 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.42 -8.09 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186935783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.500 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds