Wall clock time and date at job start Tue Mar 31 2020 06:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38266 * 119.94669 * 2 1 4 4 C 1.38069 * 120.13448 * 180.28058 * 3 2 1 5 5 C 1.39095 * 120.02902 * 359.76060 * 4 3 2 6 6 N 1.39521 * 120.05464 * 180.02562 * 5 4 3 7 7 C 1.34769 * 119.99990 * 324.86335 * 6 5 4 8 8 O 1.21741 * 120.00243 * 4.60479 * 7 6 5 9 9 C 1.46169 * 119.99952 * 184.60418 * 7 6 5 10 10 H 1.08000 * 119.99868 * 359.97438 * 9 7 6 11 11 C 1.40120 * 120.00107 * 180.02562 * 9 7 6 12 12 N 1.30639 * 119.99900 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00145 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.46927 * 59.99638 * 13 11 9 15 15 H 1.48500 * 109.47255 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46845 * 299.99565 * 13 11 9 17 17 C 1.38906 * 119.89198 * 359.97438 * 5 4 3 18 18 C 1.38567 * 119.86193 * 359.97438 * 17 5 4 19 19 O 1.35897 * 120.01503 * 180.02562 * 18 17 5 20 20 C 1.42904 * 116.99772 * 0.02562 * 19 18 17 21 21 C 1.53002 * 109.46795 * 179.97438 * 20 19 18 22 22 C 1.53006 * 109.46697 * 179.97438 * 21 20 19 23 23 C 1.53006 * 109.46803 * 175.00215 * 22 21 20 24 24 C 1.53007 * 109.47169 * 294.99763 * 22 21 20 25 25 H 1.09003 * 109.46860 * 270.23328 * 1 2 3 26 26 H 1.09001 * 109.47387 * 30.22987 * 1 2 3 27 27 H 1.09003 * 109.47181 * 150.23298 * 1 2 3 28 28 H 1.08002 * 119.93007 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.98585 * 179.74659 * 4 3 2 30 30 H 0.97006 * 119.99785 * 144.86150 * 6 5 4 31 31 H 0.96997 * 120.00116 * 180.02562 * 12 11 9 32 32 H 1.07997 * 120.07118 * 180.02562 * 17 5 4 33 33 H 1.08997 * 109.47113 * 59.99650 * 20 19 18 34 34 H 1.09003 * 109.46943 * 299.99807 * 20 19 18 35 35 H 1.08993 * 109.47327 * 299.99598 * 21 20 19 36 36 H 1.08997 * 109.47370 * 60.00060 * 21 20 19 37 37 H 1.09001 * 109.47554 * 54.99918 * 22 21 20 38 38 H 1.08990 * 109.47067 * 59.99988 * 23 22 21 39 39 H 1.09003 * 109.46643 * 179.97438 * 23 22 21 40 40 H 1.08992 * 109.46928 * 299.99399 * 23 22 21 41 41 H 1.09001 * 109.47009 * 300.00489 * 24 22 21 42 42 H 1.09003 * 109.46766 * 59.99934 * 24 22 21 43 43 H 1.08998 * 109.47091 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1981 0.0000 4 6 3.5778 1.2026 -0.0058 5 6 4.2779 0.0006 -0.0067 6 7 5.6731 0.0046 -0.0121 7 6 6.3416 0.9600 -0.6878 8 8 5.7313 1.8670 -1.2235 9 6 7.7996 0.9071 -0.7776 10 1 8.3411 0.1028 -0.3021 11 6 8.4947 1.9007 -1.4797 12 7 7.8397 2.8740 -2.0545 13 14 10.3580 1.8336 -1.5939 14 1 10.7680 0.5708 -2.2589 15 1 10.8475 2.9909 -2.3853 16 1 10.9397 1.8856 -0.2285 17 6 3.5857 -1.2036 -0.0012 18 6 2.2000 -1.2029 0.0058 19 8 1.5196 -2.3793 0.0117 20 6 2.2971 -3.5784 0.0110 21 6 1.3641 -4.7910 0.0189 22 6 2.1965 -6.0748 0.0175 23 6 1.2689 -7.2842 0.1510 24 6 2.9785 -6.1742 -1.2939 25 1 -0.3633 0.0042 1.0277 26 1 -0.3634 0.8879 -0.5174 27 1 -0.3634 -0.8921 -0.5102 28 1 1.6552 2.1322 0.0004 29 1 4.1145 2.1398 -0.0100 30 1 6.1619 -0.6803 0.4706 31 1 8.3209 3.5616 -2.5408 32 1 4.1263 -2.1386 -0.0014 33 1 2.9300 -3.6015 0.8981 34 1 2.9217 -3.6058 -0.8818 35 1 0.7398 -4.7634 0.9119 36 1 0.7309 -4.7680 -0.8680 37 1 2.8933 -6.0570 0.8555 38 1 0.5722 -7.3020 -0.6870 39 1 1.8619 -8.1988 0.1496 40 1 0.7119 -7.2134 1.0852 41 1 2.2817 -6.1920 -2.1319 42 1 3.6393 -5.3126 -1.3890 43 1 3.5711 -7.0890 -1.2951 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186935783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:36 Heat of formation + Delta-G solvation = -98.456123 kcal Electronic energy + Delta-G solvation = -22752.159599 eV Core-core repulsion = 19374.734260 eV Total energy + Delta-G solvation = -3377.425339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.39140 -39.96269 -38.33117 -37.10449 -35.51887 -34.59378 -32.37344 -31.37339 -30.15489 -28.82444 -28.03158 -26.64034 -25.03993 -23.34188 -22.54737 -21.65655 -20.79237 -19.51274 -18.87353 -17.66802 -17.18207 -17.06285 -16.51972 -16.22245 -15.96163 -15.65135 -15.21082 -14.89841 -14.64805 -14.50912 -14.38232 -14.30851 -13.66861 -13.32179 -13.23392 -13.19221 -13.03509 -12.82968 -12.74086 -12.67789 -12.56079 -12.29518 -12.13276 -12.05990 -11.86623 -11.75274 -11.51507 -11.39837 -11.00013 -10.61814 -9.89571 -9.39000 -8.59376 -8.37908 -6.96782 0.41131 0.57509 1.38864 1.42057 1.54388 2.18228 2.22894 2.35451 2.81890 2.92261 3.54608 3.83565 3.87221 3.94131 4.02854 4.11535 4.21738 4.31821 4.35625 4.44841 4.49949 4.63960 4.73071 4.76680 4.81380 4.88311 4.91643 4.93434 5.00042 5.07875 5.10607 5.18032 5.23229 5.31026 5.38443 5.43412 5.48048 5.51870 5.65966 5.76079 5.84236 6.12972 6.25033 6.53577 6.75856 7.30783 8.33073 8.55168 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015328 B = 0.003613 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.315778 B = 7747.724561 C = 9357.935229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.160 4.160 3 C -0.066 4.066 4 C -0.189 4.189 5 C 0.190 3.810 6 N -0.693 5.693 7 C 0.529 3.471 8 O -0.604 6.604 9 C -0.567 4.567 10 H 0.093 0.907 11 C 0.029 3.971 12 N -0.813 5.813 13 Si 1.002 2.998 14 H -0.254 1.254 15 H -0.273 1.273 16 H -0.253 1.253 17 C -0.251 4.251 18 C 0.145 3.855 19 O -0.315 6.315 20 C 0.050 3.950 21 C -0.105 4.105 22 C -0.091 4.091 23 C -0.144 4.144 24 C -0.156 4.156 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.145 0.855 29 H 0.103 0.897 30 H 0.406 0.594 31 H 0.278 0.722 32 H 0.141 0.859 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.850 -16.929 5.251 20.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.162 4.162 3 C -0.084 4.084 4 C -0.210 4.210 5 C 0.092 3.908 6 N -0.337 5.337 7 C 0.336 3.664 8 O -0.489 6.489 9 C -0.602 4.602 10 H 0.111 0.889 11 C -0.187 4.187 12 N -0.442 5.442 13 Si 0.821 3.179 14 H -0.177 1.177 15 H -0.198 1.198 16 H -0.177 1.177 17 C -0.273 4.273 18 C 0.099 3.901 19 O -0.228 6.228 20 C -0.025 4.025 21 C -0.143 4.143 22 C -0.110 4.110 23 C -0.201 4.201 24 C -0.213 4.213 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.162 0.838 29 H 0.121 0.879 30 H 0.241 0.759 31 H 0.088 0.912 32 H 0.158 0.842 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.410 -16.164 4.738 20.345 hybrid contribution 1.497 0.115 -0.039 1.501 sum -9.914 -16.049 4.699 19.441 Atomic orbital electron populations 1.20503 0.88465 1.02896 1.02651 1.19445 0.97843 0.89610 1.09307 1.20918 0.92429 0.98031 0.97057 1.21239 0.95039 0.97619 1.07104 1.17903 0.84319 0.93551 0.95039 1.43692 1.03300 1.32847 1.53848 1.18757 0.89298 0.80476 0.77879 1.90584 1.70189 1.36846 1.51276 1.21372 0.89750 1.12581 1.36511 0.88887 1.27025 1.06584 0.92994 0.92111 1.70141 1.39872 1.09773 1.24386 0.84997 0.74158 0.79009 0.79725 1.17744 1.19809 1.17664 1.20987 0.93567 0.97359 1.15340 1.18507 0.89301 0.86101 0.96229 1.85994 1.35973 1.12265 1.88610 1.23103 0.95124 0.82570 1.01688 1.21584 0.97831 0.91119 1.03738 1.21043 0.97402 0.93841 0.98686 1.21800 0.99257 0.96843 1.02196 1.21969 1.00201 1.01920 0.97214 0.90708 0.90844 0.91444 0.83768 0.87873 0.75852 0.91183 0.84153 0.91685 0.92252 0.90357 0.90967 0.90636 0.92430 0.91813 0.92079 0.92456 0.93373 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.18 9.78 71.23 0.70 -1.49 16 2 C -0.16 -5.30 5.90 -19.72 -0.12 -5.41 16 3 C -0.07 -2.44 9.69 22.24 0.22 -2.22 16 4 C -0.19 -8.72 8.69 22.44 0.19 -8.52 16 5 C 0.19 8.46 6.29 38.28 0.24 8.70 16 6 N -0.69 -32.75 5.31 -307.60 -1.63 -34.39 16 7 C 0.53 30.79 7.58 86.30 0.65 31.45 16 8 O -0.60 -39.97 12.44 -4.48 -0.06 -40.03 16 9 C -0.57 -31.58 9.53 24.79 0.24 -31.34 16 10 H 0.09 4.58 7.85 -2.91 -0.02 4.55 16 11 C 0.03 1.60 5.50 85.33 0.47 2.07 16 12 N -0.81 -48.91 11.82 21.85 0.26 -48.65 16 13 Si 1.00 39.87 29.56 68.60 2.03 41.90 16 14 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 15 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 16 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 17 C -0.25 -9.16 8.96 22.51 0.20 -8.96 16 18 C 0.14 4.87 6.66 22.49 0.15 5.02 16 19 O -0.31 -8.92 9.17 -92.39 -0.85 -9.76 16 20 C 0.05 1.11 4.50 71.98 0.32 1.43 16 21 C -0.11 -1.76 5.05 30.60 0.15 -1.61 16 22 C -0.09 -1.27 2.92 -10.79 -0.03 -1.30 16 23 C -0.14 -1.62 9.19 71.98 0.66 -0.96 16 24 C -0.16 -2.33 8.95 71.98 0.64 -1.69 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.07 1.60 8.09 -2.39 -0.02 1.58 16 27 H 0.07 1.61 7.53 -2.39 -0.02 1.59 16 28 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 29 H 0.10 5.58 6.22 -2.91 -0.02 5.56 16 30 H 0.41 16.16 8.80 -92.70 -0.82 15.35 16 31 H 0.28 15.14 8.29 -92.71 -0.77 14.37 16 32 H 0.14 4.42 6.29 -2.91 -0.02 4.40 16 33 H 0.06 1.37 7.66 -2.39 -0.02 1.36 16 34 H 0.06 1.38 6.08 -2.39 -0.01 1.36 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.05 0.82 6.56 -2.39 -0.02 0.81 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -73.74 353.53 4.64 -69.10 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: 0.19 Total: 36.68 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: 4.70 Total: -14.84 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -1.38 Total: -83.04 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -0.90 Total: -49.79 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -73.74 4.64 -69.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186935783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.357 kcal (2) G-P(sol) polarization free energy of solvation -73.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds