Wall clock time and date at job start Tue Mar 31 2020 06:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38290 * 119.96467 * 2 1 4 4 C 1.38250 * 120.10398 * 179.76806 * 3 2 1 5 5 C 1.38166 * 120.05747 * 0.50523 * 4 3 2 6 6 C 1.50698 * 120.02573 * 179.76635 * 5 4 3 7 7 N 1.46496 * 109.47374 * 259.72346 * 6 5 4 8 8 C 1.34780 * 120.00110 * 180.02562 * 7 6 5 9 9 O 1.21686 * 119.99709 * 0.02562 * 8 7 6 10 10 C 1.46370 * 120.00118 * 180.02562 * 8 7 6 11 11 H 1.08000 * 120.00154 * 359.97438 * 10 8 7 12 12 C 1.40047 * 120.00066 * 180.02562 * 10 8 7 13 13 N 1.30671 * 120.00202 * 359.97438 * 12 10 8 14 14 Si 1.86804 * 119.99976 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47020 * 90.00497 * 14 12 10 16 16 H 1.48506 * 109.46893 * 210.00202 * 14 12 10 17 17 H 1.48493 * 109.46968 * 329.99795 * 14 12 10 18 18 C 1.38712 * 119.94298 * 359.49522 * 5 4 3 19 19 O 1.35897 * 120.05277 * 180.27261 * 18 5 4 20 20 C 1.42899 * 116.99768 * 175.40106 * 19 18 5 21 21 C 1.53002 * 109.47144 * 63.23617 * 20 19 18 22 22 C 1.53000 * 109.47020 * 183.23796 * 20 19 18 23 23 C 1.52999 * 109.47335 * 303.23716 * 20 19 18 24 24 C 1.38117 * 119.97412 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47189 * 269.97564 * 1 2 3 26 26 H 1.08999 * 109.47120 * 29.97947 * 1 2 3 27 27 H 1.09003 * 109.46721 * 149.97838 * 1 2 3 28 28 H 1.07995 * 119.95092 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.97104 * 180.25362 * 4 3 2 30 30 H 1.09003 * 109.46831 * 139.72793 * 6 5 4 31 31 H 1.09004 * 109.47249 * 19.73161 * 6 5 4 32 32 H 0.96997 * 119.99956 * 0.02562 * 7 6 5 33 33 H 0.96997 * 120.00731 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.47052 * 77.61785 * 21 20 19 35 35 H 1.09001 * 109.46736 * 197.61356 * 21 20 19 36 36 H 1.08996 * 109.47077 * 317.61726 * 21 20 19 37 37 H 1.08994 * 109.47102 * 60.00021 * 22 20 19 38 38 H 1.09008 * 109.46921 * 180.02562 * 22 20 19 39 39 H 1.09000 * 109.47345 * 299.99516 * 22 20 19 40 40 H 1.09004 * 109.47174 * 47.88653 * 23 20 19 41 41 H 1.08994 * 109.47587 * 167.89381 * 23 20 19 42 42 H 1.09002 * 109.47407 * 287.89264 * 23 20 19 43 43 H 1.07996 * 120.03034 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5802 1.2014 0.0048 5 6 4.2752 0.0073 -0.0009 6 6 5.7822 0.0118 -0.0009 7 7 6.2712 -0.2267 -1.3611 8 6 7.5965 -0.2660 -1.6035 9 8 8.3867 -0.1038 -0.6925 10 6 8.0851 -0.5037 -2.9626 11 1 7.3838 -0.6480 -3.7711 12 6 9.4621 -0.5451 -3.2144 13 7 10.3108 -0.3710 -2.2362 14 14 10.0857 -0.8492 -4.9488 15 1 10.2481 0.4491 -5.6512 16 1 11.3954 -1.5466 -4.8887 17 1 9.1096 -1.6918 -5.6851 18 6 3.5846 -1.1957 -0.0008 19 8 4.2659 -2.3716 -0.0008 20 6 3.4930 -3.5691 0.1013 21 6 2.5833 -3.6949 -1.1225 22 6 4.4300 -4.7769 0.1665 23 6 2.6381 -3.5179 1.3691 24 6 2.1971 -1.1964 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6564 2.1325 0.0004 29 1 4.1175 2.1383 0.0090 30 1 6.1478 -0.7744 0.6597 31 1 6.1426 0.9786 0.3507 32 1 5.6413 -0.3563 -2.0872 33 1 11.2645 -0.3992 -2.4105 34 1 3.1672 -4.0411 -1.9753 35 1 1.7882 -4.4103 -0.9121 36 1 2.1464 -2.7230 -1.3518 37 1 5.0781 -4.6873 1.0383 38 1 3.8404 -5.6904 0.2439 39 1 5.0390 -4.8135 -0.7368 40 1 2.1308 -2.5548 1.4266 41 1 1.8978 -4.3174 1.3408 42 1 3.2766 -3.6449 2.2433 43 1 1.6572 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187817123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:39 Heat of formation + Delta-G solvation = -48.006473 kcal Electronic energy + Delta-G solvation = -23761.584405 eV Core-core repulsion = 20386.346727 eV Total energy + Delta-G solvation = -3375.237678 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.84090 -38.11044 -37.02069 -34.65525 -33.40364 -32.37235 -31.48134 -30.31299 -28.19865 -27.53745 -27.15515 -26.06168 -23.76587 -22.93324 -20.90226 -20.01485 -19.48471 -17.32550 -16.88575 -16.13558 -15.68153 -15.32608 -15.12586 -14.52256 -14.30435 -14.22614 -13.95550 -13.80147 -13.27891 -13.22190 -13.00859 -12.64089 -12.44369 -12.31964 -12.13393 -12.00852 -11.82659 -11.81724 -11.55281 -11.42832 -11.17566 -11.04497 -10.78426 -10.55904 -10.54203 -10.36471 -10.30423 -10.14543 -8.76927 -8.58091 -7.95489 -7.43797 -7.32019 -6.08908 -4.53731 1.40147 1.59260 3.19268 3.25605 3.29409 3.31772 3.80640 4.19487 4.61075 4.69126 4.71251 4.79615 4.84907 4.90273 5.02320 5.20708 5.34699 5.37051 5.38486 5.42897 5.47393 5.54497 5.56132 5.64392 5.68354 5.74462 5.76199 5.89374 5.93748 5.95561 6.13892 6.14717 6.16062 6.28235 6.49066 6.60345 6.66289 6.87232 7.00673 7.52073 7.66934 8.06323 8.23690 8.44814 9.11747 9.68379 10.70537 10.90486 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016720 B = 0.004424 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.282987 B = 6328.292055 C = 7118.357632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.059 4.059 3 C -0.163 4.163 4 C -0.065 4.065 5 C -0.128 4.128 6 C 0.182 3.818 7 N -0.757 5.757 8 C 0.557 3.443 9 O -0.583 6.583 10 C -0.544 4.544 11 H 0.066 0.934 12 C 0.088 3.912 13 N -0.770 5.770 14 Si 0.906 3.094 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.266 1.266 18 C 0.153 3.847 19 O -0.288 6.288 20 C 0.107 3.893 21 C -0.197 4.197 22 C -0.138 4.138 23 C -0.201 4.201 24 C -0.228 4.228 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.119 0.881 29 H 0.129 0.871 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.379 0.621 33 H 0.267 0.733 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.384 -4.520 4.149 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.060 4.060 3 C -0.181 4.181 4 C -0.084 4.084 5 C -0.129 4.129 6 C 0.058 3.942 7 N -0.412 5.412 8 C 0.361 3.639 9 O -0.466 6.466 10 C -0.581 4.581 11 H 0.084 0.916 12 C -0.131 4.131 13 N -0.399 5.399 14 Si 0.730 3.270 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.190 1.190 18 C 0.107 3.893 19 O -0.201 6.201 20 C 0.070 3.930 21 C -0.254 4.254 22 C -0.195 4.195 23 C -0.258 4.258 24 C -0.246 4.246 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.137 0.863 29 H 0.147 0.853 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.210 0.790 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -19.369 -4.451 4.897 20.468 hybrid contribution -0.226 -0.286 -1.190 1.244 sum -19.596 -4.736 3.707 20.498 Atomic orbital electron populations 1.20776 0.91456 1.02586 1.02100 1.19665 0.95611 0.92708 0.97971 1.20862 0.94028 0.97282 1.05962 1.20946 0.93776 0.97099 0.96549 1.19602 0.96837 0.90388 1.06071 1.19572 0.86175 1.00513 0.87974 1.46092 1.08218 1.80142 1.06752 1.18192 0.79068 0.76620 0.90046 1.90589 1.54452 1.54715 1.46810 1.20874 0.91878 1.52416 0.92967 0.91597 1.25688 0.96770 0.92855 0.97782 1.70027 1.02379 1.35698 1.31772 0.86412 0.78478 0.78927 0.83138 1.19796 1.20515 1.18988 1.18769 0.90102 0.85904 0.94568 1.86343 1.35142 1.11567 1.87095 1.21761 0.91915 0.84574 0.94792 1.22867 1.00191 1.03893 0.98478 1.21795 0.99226 0.94529 1.03976 1.22933 1.00839 1.04138 0.97895 1.21648 0.93235 0.99275 1.10449 0.91303 0.91505 0.91830 0.86300 0.85347 0.92413 0.92912 0.79014 0.92247 0.91273 0.91375 0.89965 0.91450 0.90818 0.91080 0.89698 0.91281 0.91567 0.83561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.01 0.36 -0.59 16 2 C -0.06 -0.70 5.88 -104.65 -0.62 -1.31 16 3 C -0.16 -2.04 9.70 -39.56 -0.38 -2.42 16 4 C -0.07 -0.96 9.66 -39.60 -0.38 -1.34 16 5 C -0.13 -2.19 5.26 -104.47 -0.55 -2.74 16 6 C 0.18 3.89 5.46 -5.20 -0.03 3.86 16 7 N -0.76 -18.30 5.54 -62.90 -0.35 -18.65 16 8 C 0.56 16.63 7.75 -12.99 -0.10 16.53 16 9 O -0.58 -19.64 15.02 5.20 0.08 -19.57 16 10 C -0.54 -16.00 9.54 -35.63 -0.34 -16.34 16 11 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 12 C 0.09 2.54 5.50 -17.37 -0.10 2.45 16 13 N -0.77 -23.76 11.83 55.55 0.66 -23.11 16 14 Si 0.91 20.73 29.56 -169.99 -5.02 15.71 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 C 0.15 2.42 6.04 -39.22 -0.24 2.18 16 19 O -0.29 -4.80 9.02 -19.42 -0.18 -4.97 16 20 C 0.11 1.33 1.11 -90.62 -0.10 1.23 16 21 C -0.20 -2.12 8.12 37.16 0.30 -1.82 16 22 C -0.14 -1.61 8.74 37.16 0.32 -1.29 16 23 C -0.20 -2.08 8.08 37.16 0.30 -1.78 16 24 C -0.23 -2.91 5.38 -39.44 -0.21 -3.13 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.13 1.76 8.03 -52.49 -0.42 1.34 16 30 H 0.06 1.34 7.85 -51.93 -0.41 0.93 16 31 H 0.05 1.15 8.00 -51.93 -0.42 0.73 16 32 H 0.38 8.42 8.44 -40.82 -0.34 8.08 16 33 H 0.27 7.46 8.29 -40.82 -0.34 7.12 16 34 H 0.07 0.78 8.01 -51.93 -0.42 0.37 16 35 H 0.07 0.56 7.84 -51.93 -0.41 0.15 16 36 H 0.08 0.93 4.75 -51.93 -0.25 0.68 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.91 4.47 -51.93 -0.23 0.68 16 41 H 0.07 0.55 7.89 -51.93 -0.41 0.14 16 42 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 43 H 0.15 1.58 3.61 -52.49 -0.19 1.39 16 LS Contribution 348.44 15.07 5.25 5.25 Total: -1.00 -35.73 348.44 -7.73 -43.46 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.41 Total: 8.39 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -1.76 Total: -6.51 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.31 Total: -41.76 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.10 Total: -24.54 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.73 -7.73 -43.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187817123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.551 kcal (2) G-P(sol) polarization free energy of solvation -35.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds