Wall clock time and date at job start Tue Mar 31 2020 06:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38290 * 119.96467 * 2 1 4 4 C 1.38250 * 120.10398 * 179.76806 * 3 2 1 5 5 C 1.38166 * 120.05747 * 0.50523 * 4 3 2 6 6 C 1.50698 * 120.02573 * 179.76635 * 5 4 3 7 7 N 1.46496 * 109.47374 * 259.72346 * 6 5 4 8 8 C 1.34780 * 120.00110 * 180.02562 * 7 6 5 9 9 O 1.21686 * 119.99709 * 0.02562 * 8 7 6 10 10 C 1.46370 * 120.00118 * 180.02562 * 8 7 6 11 11 H 1.08000 * 120.00154 * 359.97438 * 10 8 7 12 12 C 1.40047 * 120.00066 * 180.02562 * 10 8 7 13 13 N 1.30671 * 120.00202 * 359.97438 * 12 10 8 14 14 Si 1.86804 * 119.99976 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47020 * 90.00497 * 14 12 10 16 16 H 1.48506 * 109.46893 * 210.00202 * 14 12 10 17 17 H 1.48493 * 109.46968 * 329.99795 * 14 12 10 18 18 C 1.38712 * 119.94298 * 359.49522 * 5 4 3 19 19 O 1.35897 * 120.05277 * 180.27261 * 18 5 4 20 20 C 1.42899 * 116.99768 * 175.40106 * 19 18 5 21 21 C 1.53002 * 109.47144 * 63.23617 * 20 19 18 22 22 C 1.53000 * 109.47020 * 183.23796 * 20 19 18 23 23 C 1.52999 * 109.47335 * 303.23716 * 20 19 18 24 24 C 1.38117 * 119.97412 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47189 * 269.97564 * 1 2 3 26 26 H 1.08999 * 109.47120 * 29.97947 * 1 2 3 27 27 H 1.09003 * 109.46721 * 149.97838 * 1 2 3 28 28 H 1.07995 * 119.95092 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.97104 * 180.25362 * 4 3 2 30 30 H 1.09003 * 109.46831 * 139.72793 * 6 5 4 31 31 H 1.09004 * 109.47249 * 19.73161 * 6 5 4 32 32 H 0.96997 * 119.99956 * 0.02562 * 7 6 5 33 33 H 0.96997 * 120.00731 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.47052 * 77.61785 * 21 20 19 35 35 H 1.09001 * 109.46736 * 197.61356 * 21 20 19 36 36 H 1.08996 * 109.47077 * 317.61726 * 21 20 19 37 37 H 1.08994 * 109.47102 * 60.00021 * 22 20 19 38 38 H 1.09008 * 109.46921 * 180.02562 * 22 20 19 39 39 H 1.09000 * 109.47345 * 299.99516 * 22 20 19 40 40 H 1.09004 * 109.47174 * 47.88653 * 23 20 19 41 41 H 1.08994 * 109.47587 * 167.89381 * 23 20 19 42 42 H 1.09002 * 109.47407 * 287.89264 * 23 20 19 43 43 H 1.07996 * 120.03034 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1981 0.0000 4 6 3.5802 1.2014 0.0048 5 6 4.2752 0.0073 -0.0009 6 6 5.7822 0.0118 -0.0009 7 7 6.2712 -0.2267 -1.3611 8 6 7.5965 -0.2660 -1.6035 9 8 8.3867 -0.1038 -0.6925 10 6 8.0851 -0.5037 -2.9626 11 1 7.3838 -0.6480 -3.7711 12 6 9.4621 -0.5451 -3.2144 13 7 10.3108 -0.3710 -2.2362 14 14 10.0857 -0.8492 -4.9488 15 1 10.2481 0.4491 -5.6512 16 1 11.3954 -1.5466 -4.8887 17 1 9.1096 -1.6918 -5.6851 18 6 3.5846 -1.1957 -0.0008 19 8 4.2659 -2.3716 -0.0008 20 6 3.4930 -3.5691 0.1013 21 6 2.5833 -3.6949 -1.1225 22 6 4.4300 -4.7769 0.1665 23 6 2.6381 -3.5179 1.3691 24 6 2.1971 -1.1964 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6564 2.1325 0.0004 29 1 4.1175 2.1383 0.0090 30 1 6.1478 -0.7744 0.6597 31 1 6.1426 0.9786 0.3507 32 1 5.6413 -0.3563 -2.0872 33 1 11.2645 -0.3992 -2.4105 34 1 3.1672 -4.0411 -1.9753 35 1 1.7882 -4.4103 -0.9121 36 1 2.1464 -2.7230 -1.3518 37 1 5.0781 -4.6873 1.0383 38 1 3.8404 -5.6904 0.2439 39 1 5.0390 -4.8135 -0.7368 40 1 2.1308 -2.5548 1.4266 41 1 1.8978 -4.3174 1.3408 42 1 3.2766 -3.6449 2.2433 43 1 1.6572 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187817123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:39 Heat of formation + Delta-G solvation = -72.369898 kcal Electronic energy + Delta-G solvation = -23762.640882 eV Core-core repulsion = 20386.346727 eV Total energy + Delta-G solvation = -3376.294155 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.92427 -39.51262 -38.87748 -36.02257 -34.89689 -34.44627 -33.00141 -31.35188 -29.69489 -28.35872 -28.25955 -27.81005 -25.24396 -23.99234 -22.09265 -21.68891 -20.95193 -19.36439 -17.91637 -17.56945 -17.26208 -16.85686 -16.37397 -15.97424 -15.82774 -15.41243 -15.35514 -15.02332 -14.80163 -14.36594 -14.04295 -14.02097 -13.72111 -13.43979 -13.29271 -13.14238 -13.04225 -12.86938 -12.75067 -12.72166 -12.64876 -12.61708 -12.44252 -12.35049 -12.02387 -11.60737 -11.51764 -11.29540 -10.93811 -9.99789 -9.55487 -9.46947 -8.99564 -8.28451 -6.86488 0.29561 0.51232 1.38294 1.40951 1.56068 2.24603 2.30379 2.46844 2.68735 3.36815 3.60551 3.68957 3.78027 3.82319 3.90252 3.96409 4.07790 4.21145 4.31098 4.56028 4.58050 4.60567 4.69622 4.70792 4.75754 4.76531 4.84622 4.86811 4.90497 4.93610 5.00923 5.10943 5.23772 5.29224 5.30279 5.30523 5.42371 5.57279 5.67028 5.86577 5.95616 6.19962 6.26795 6.61120 6.85441 7.54221 8.48690 8.67226 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016720 B = 0.004424 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.282987 B = 6328.292055 C = 7118.357632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.049 4.049 3 C -0.161 4.161 4 C -0.071 4.071 5 C -0.161 4.161 6 C 0.193 3.807 7 N -0.743 5.743 8 C 0.538 3.462 9 O -0.635 6.635 10 C -0.573 4.573 11 H 0.084 0.916 12 C 0.028 3.972 13 N -0.823 5.823 14 Si 1.000 3.000 15 H -0.259 1.259 16 H -0.271 1.271 17 H -0.250 1.250 18 C 0.142 3.858 19 O -0.327 6.327 20 C 0.093 3.907 21 C -0.192 4.192 22 C -0.139 4.139 23 C -0.195 4.195 24 C -0.222 4.222 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.149 0.851 29 H 0.129 0.871 30 H 0.026 0.974 31 H 0.038 0.962 32 H 0.389 0.611 33 H 0.275 0.725 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.108 0.892 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.055 0.945 43 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.877 -5.233 2.512 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.049 4.049 3 C -0.179 4.179 4 C -0.090 4.090 5 C -0.162 4.162 6 C 0.069 3.931 7 N -0.396 5.396 8 C 0.342 3.658 9 O -0.522 6.522 10 C -0.610 4.610 11 H 0.102 0.898 12 C -0.186 4.186 13 N -0.452 5.452 14 Si 0.819 3.181 15 H -0.183 1.183 16 H -0.195 1.195 17 H -0.173 1.173 18 C 0.096 3.904 19 O -0.241 6.241 20 C 0.056 3.944 21 C -0.249 4.249 22 C -0.196 4.196 23 C -0.251 4.251 24 C -0.240 4.240 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.166 0.834 29 H 0.147 0.853 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.222 0.778 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.127 0.873 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.074 0.926 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -22.934 -5.164 3.262 23.733 hybrid contribution 0.761 -0.079 -0.599 0.971 sum -22.173 -5.243 2.663 22.940 Atomic orbital electron populations 1.20879 0.88255 1.04100 1.03579 1.20183 0.97819 0.91834 0.95101 1.21187 0.92868 0.99069 1.04772 1.21039 0.95136 0.96163 0.96628 1.19306 0.93887 0.92496 1.10493 1.19401 0.89794 0.98292 0.85616 1.45804 1.06828 1.78580 1.08408 1.18656 0.80443 0.76442 0.90228 1.90534 1.56299 1.57197 1.48215 1.21392 0.93325 1.53018 0.93230 0.89804 1.27007 0.96495 0.91509 1.03626 1.70199 1.03205 1.36457 1.35345 0.84992 0.78024 0.79498 0.75565 1.18347 1.19531 1.17346 1.18908 0.91391 0.85148 0.94969 1.86300 1.37479 1.12979 1.87389 1.22137 0.92336 0.83086 0.96797 1.22834 1.00443 1.04505 0.97102 1.21853 0.99404 0.96122 1.02173 1.22887 1.00870 1.05185 0.96193 1.21900 0.91745 1.00936 1.09428 0.89634 0.90095 0.90344 0.83365 0.85281 0.95552 0.94367 0.77832 0.91529 0.92495 0.87987 0.90374 0.92948 0.87329 0.93199 0.89910 0.88029 0.92591 0.81190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 10.01 71.24 0.71 -0.63 16 2 C -0.05 -1.00 5.88 -19.88 -0.12 -1.12 16 3 C -0.16 -3.64 9.70 22.28 0.22 -3.42 16 4 C -0.07 -2.10 9.66 22.26 0.22 -1.88 16 5 C -0.16 -5.76 5.26 -19.77 -0.10 -5.86 16 6 C 0.19 8.95 5.46 85.63 0.47 9.41 16 7 N -0.74 -38.18 5.54 -471.15 -2.61 -40.79 16 8 C 0.54 33.96 7.75 86.36 0.67 34.63 16 9 O -0.63 -45.70 15.02 -4.30 -0.06 -45.77 16 10 C -0.57 -34.66 9.54 24.83 0.24 -34.42 16 11 H 0.08 4.59 7.85 -2.91 -0.02 4.57 16 12 C 0.03 1.66 5.50 85.30 0.47 2.13 16 13 N -0.82 -52.60 11.83 21.84 0.26 -52.34 16 14 Si 1.00 42.70 29.56 68.60 2.03 44.73 16 15 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 18 C 0.14 4.55 6.04 22.51 0.14 4.69 16 19 O -0.33 -11.34 9.02 -92.39 -0.83 -12.18 16 20 C 0.09 2.26 1.11 -10.79 -0.01 2.25 16 21 C -0.19 -3.73 8.12 71.98 0.58 -3.15 16 22 C -0.14 -3.25 8.74 71.98 0.63 -2.63 16 23 C -0.19 -3.64 8.08 71.98 0.58 -3.06 16 24 C -0.22 -5.22 5.38 22.36 0.12 -5.10 16 25 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 27 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 28 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 29 H 0.13 3.64 8.03 -2.91 -0.02 3.62 16 30 H 0.03 1.35 7.85 -2.39 -0.02 1.34 16 31 H 0.04 1.83 8.00 -2.39 -0.02 1.81 16 32 H 0.39 18.13 8.44 -92.71 -0.78 17.35 16 33 H 0.27 15.82 8.29 -92.71 -0.77 15.05 16 34 H 0.06 1.24 8.01 -2.39 -0.02 1.22 16 35 H 0.10 1.26 7.84 -2.39 -0.02 1.24 16 36 H 0.08 1.58 4.75 -2.39 -0.01 1.57 16 37 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.58 4.47 -2.39 -0.01 1.57 16 41 H 0.10 1.22 7.89 -2.39 -0.02 1.20 16 42 H 0.05 1.15 8.09 -2.39 -0.02 1.13 16 43 H 0.17 3.11 3.61 -2.91 -0.01 3.10 16 Total: -1.00 -83.76 348.44 3.82 -79.94 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: 0.24 Total: 34.57 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 4.81 Total: -8.16 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -2.35 Total: -93.13 kcal Atomic # 8 Polarization: -57.05 SS G_CDS: -0.90 Total: -57.94 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -83.76 3.82 -79.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187817123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.572 kcal (2) G-P(sol) polarization free energy of solvation -83.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds