Wall clock time and date at job start Tue Mar 31 2020 06:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00192 * 2 1 4 4 C 1.38736 * 120.05531 * 90.00401 * 3 2 1 5 5 C 1.50695 * 120.02668 * 359.97438 * 4 3 2 6 6 C 1.38145 * 119.94237 * 179.97438 * 4 3 2 7 7 C 1.38263 * 120.06052 * 359.97438 * 6 4 3 8 8 C 1.50697 * 119.94789 * 180.02562 * 7 6 4 9 9 N 1.46895 * 109.47143 * 89.99855 * 8 7 6 10 10 C 1.47961 * 111.00270 * 170.00071 * 9 8 7 11 11 C 1.53934 * 86.18427 * 222.41862 * 10 9 8 12 12 O 1.42895 * 113.73076 * 269.25870 * 11 10 9 13 13 C 1.50696 * 113.73266 * 138.07361 * 11 10 9 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99717 * 179.97438 * 13 11 10 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 11 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.47958 * 110.99863 * 70.64193 * 9 8 7 22 22 C 1.38269 * 120.10843 * 0.27327 * 7 6 4 23 23 C 1.38150 * 120.05439 * 359.45487 * 22 7 6 24 24 C 1.50706 * 120.02869 * 180.27132 * 23 22 7 25 25 H 1.08992 * 109.47368 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46856 * 300.00399 * 1 2 3 27 27 H 1.08999 * 109.46758 * 59.99759 * 1 2 3 28 28 H 1.09005 * 109.47346 * 269.98113 * 5 4 3 29 29 H 1.08991 * 109.47526 * 29.98504 * 5 4 3 30 30 H 1.09000 * 109.47069 * 149.98274 * 5 4 3 31 31 H 1.08001 * 119.96850 * 179.97438 * 6 4 3 32 32 H 1.09005 * 109.46817 * 329.99953 * 8 7 6 33 33 H 1.08999 * 109.46747 * 210.00365 * 8 7 6 34 34 H 1.08996 * 113.76309 * 108.09300 * 10 9 8 35 35 H 1.09008 * 113.85816 * 336.74814 * 10 9 8 36 36 H 0.96697 * 114.00066 * 178.10080 * 12 11 10 37 37 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 38 38 H 1.08993 * 113.76569 * 23.26601 * 21 9 8 39 39 H 1.09005 * 113.75789 * 251.89882 * 21 9 8 40 40 H 1.07998 * 119.97313 * 179.70052 * 22 7 6 41 41 H 1.08994 * 109.47144 * 270.27172 * 24 23 22 42 42 H 1.08998 * 109.46951 * 30.27395 * 24 23 22 43 43 H 1.09002 * 109.46735 * 150.27202 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 2.3615 1.8299 1.2008 5 6 2.0199 1.1604 2.5069 6 6 2.9892 3.0605 1.1981 7 6 3.3035 3.6750 0.0001 8 6 3.9887 5.0172 0.0001 9 7 5.4448 4.8235 0.0006 10 6 6.1499 6.1021 -0.2392 11 6 7.0743 5.2988 -1.1719 12 8 8.2256 4.7618 -0.5175 13 6 7.4080 6.0122 -2.4566 14 1 7.0055 6.9958 -2.6484 15 6 8.2281 5.4095 -3.3869 16 7 8.5198 6.0323 -4.5079 17 14 8.9249 3.7084 -3.0548 18 1 10.2284 3.8354 -2.3548 19 1 7.9785 2.9433 -2.2039 20 1 9.1217 2.9943 -4.3419 21 6 5.9105 4.2995 -1.3023 22 6 2.9855 3.0625 -1.1980 23 6 2.3628 1.8293 -1.2008 24 6 2.0219 1.1594 -2.5070 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.0221 1.4662 2.8219 29 1 2.0445 0.0784 2.3781 30 1 2.7458 1.4525 3.2657 31 1 3.2347 3.5430 2.1326 32 1 3.6959 5.5746 0.8899 33 1 3.6965 5.5742 -0.8901 34 1 6.6529 6.4984 0.6428 35 1 5.5462 6.8484 -0.7556 36 1 8.7940 4.2322 -1.0933 37 1 9.0971 5.6084 -5.1621 38 1 5.2355 4.5173 -2.1299 39 1 6.2224 3.2556 -1.2697 40 1 3.2276 3.5467 -2.1325 41 1 1.0244 1.4648 -2.8225 42 1 2.7482 1.4514 -3.2654 43 1 2.0468 0.0773 -2.3777 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190980915.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:12 Heat of formation + Delta-G solvation = -40.614018 kcal Electronic energy + Delta-G solvation = -23726.940309 eV Core-core repulsion = 20352.023193 eV Total energy + Delta-G solvation = -3374.917117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.52521 -40.81062 -38.43323 -36.66574 -34.55955 -34.54793 -33.32698 -30.10622 -28.91982 -27.96102 -27.75363 -26.99818 -26.49530 -24.01605 -21.97259 -21.37952 -20.85950 -19.34534 -18.61772 -18.15372 -17.58829 -17.01072 -16.57354 -16.14399 -16.08268 -15.25944 -15.02322 -14.98767 -14.87869 -14.50630 -14.36897 -14.20319 -14.10018 -13.95819 -13.79492 -13.43153 -13.12340 -12.97488 -12.76827 -12.65772 -12.49122 -12.45299 -12.27863 -12.07396 -11.88477 -11.78280 -11.17077 -10.93776 -10.86437 -10.47501 -9.70846 -9.54655 -9.33162 -8.46191 -6.55282 0.17386 0.35561 1.19338 1.26481 1.33977 2.14229 2.40913 2.77797 2.92407 3.09053 3.56572 3.70564 3.80660 3.82815 4.01590 4.15022 4.25751 4.31239 4.40198 4.45455 4.48896 4.50326 4.56272 4.64926 4.68032 4.69732 4.73142 4.75999 4.77970 4.85463 4.90548 4.92631 5.13253 5.15622 5.28907 5.31788 5.32815 5.46429 5.53734 5.66409 5.79872 6.01422 6.17205 6.49514 6.58640 6.75070 7.12576 8.69686 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021097 B = 0.004339 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.872999 B = 6452.157272 C = 6999.366694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.346 6.346 3 C 0.077 3.923 4 C -0.109 4.109 5 C -0.105 4.105 6 C -0.101 4.101 7 C -0.079 4.079 8 C 0.058 3.942 9 N -0.470 5.470 10 C 0.029 3.971 11 C 0.182 3.818 12 O -0.558 6.558 13 C -0.546 4.546 14 H 0.052 0.948 15 C 0.028 3.972 16 N -0.927 5.927 17 Si 0.916 3.084 18 H -0.254 1.254 19 H -0.241 1.241 20 H -0.282 1.282 21 C -0.011 4.011 22 C -0.119 4.119 23 C -0.111 4.111 24 C -0.108 4.108 25 H 0.113 0.887 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.138 0.862 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.349 0.651 37 H 0.272 0.728 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.120 0.880 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.421 -11.139 9.987 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.263 6.263 3 C 0.034 3.966 4 C -0.109 4.109 5 C -0.162 4.162 6 C -0.120 4.120 7 C -0.079 4.079 8 C -0.070 4.070 9 N -0.192 5.192 10 C -0.099 4.099 11 C 0.141 3.859 12 O -0.369 6.369 13 C -0.584 4.584 14 H 0.070 0.930 15 C -0.173 4.173 16 N -0.565 5.565 17 Si 0.742 3.258 18 H -0.179 1.179 19 H -0.165 1.165 20 H -0.209 1.209 21 C -0.140 4.140 22 C -0.138 4.138 23 C -0.111 4.111 24 C -0.164 4.164 25 H 0.131 0.869 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.156 0.844 32 H 0.118 0.882 33 H 0.067 0.933 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.201 0.799 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.137 0.863 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.410 -11.367 10.931 23.490 hybrid contribution 0.534 0.074 -1.743 1.824 sum -16.876 -11.293 9.188 22.288 Atomic orbital electron populations 1.23173 0.77542 1.04519 1.01122 1.85938 1.21353 1.24659 1.94400 1.18432 0.99627 0.86891 0.91690 1.20429 0.99778 0.94685 0.96010 1.20695 1.02583 1.00505 0.92386 1.20952 0.98431 0.94606 0.97975 1.19803 0.97927 0.96641 0.93522 1.21643 0.88995 0.93844 1.02534 1.68599 1.05643 1.14805 1.30165 1.23991 0.94643 0.92513 0.98746 1.20669 0.83212 0.91400 0.90578 1.86454 1.37968 1.71270 1.41166 1.21597 1.31079 1.04258 1.01417 0.92959 1.25769 0.95645 1.01395 0.94443 1.70003 1.37042 1.40016 1.09448 0.86364 0.80568 0.80492 0.78417 1.17918 1.16549 1.20867 1.24718 0.98474 0.99635 0.91177 1.20975 0.99671 0.95164 0.97977 1.20361 1.00048 0.94564 0.96167 1.20699 1.02351 1.00710 0.92685 0.86853 0.92971 0.93373 0.89875 0.91188 0.90615 0.84391 0.88244 0.93324 0.89201 0.89987 0.79906 0.91855 0.91114 0.91785 0.86251 0.89958 0.91511 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.13 113.37 1.26 1.71 16 2 O -0.35 -7.99 8.51 -92.38 -0.79 -8.77 16 3 C 0.08 2.02 5.67 22.51 0.13 2.15 16 4 C -0.11 -2.70 5.89 -19.77 -0.12 -2.82 16 5 C -0.11 -1.94 9.79 71.23 0.70 -1.24 16 6 C -0.10 -2.69 9.35 22.25 0.21 -2.48 16 7 C -0.08 -2.33 5.12 -19.85 -0.10 -2.43 16 8 C 0.06 1.77 4.97 85.56 0.43 2.20 16 9 N -0.47 -17.85 6.25 -915.39 -5.72 -23.57 16 10 C 0.03 1.19 7.36 86.41 0.64 1.83 16 11 C 0.18 8.70 1.05 -10.89 -0.01 8.69 16 12 O -0.56 -27.39 13.32 -148.98 -1.98 -29.37 16 13 C -0.55 -30.39 9.20 25.60 0.24 -30.15 16 14 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 15 C 0.03 1.57 5.47 84.66 0.46 2.03 16 16 N -0.93 -55.42 13.96 21.45 0.30 -55.12 16 17 Si 0.92 41.78 24.34 68.60 1.67 43.45 16 18 H -0.25 -10.95 7.06 99.48 0.70 -10.25 16 19 H -0.24 -10.46 5.28 99.48 0.52 -9.94 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 C -0.01 -0.45 5.54 86.41 0.48 0.03 16 22 C -0.12 -3.54 8.63 22.26 0.19 -3.35 16 23 C -0.11 -3.02 5.89 -19.77 -0.12 -3.14 16 24 C -0.11 -2.41 9.79 71.24 0.70 -1.71 16 25 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.07 1.31 7.53 -2.39 -0.02 1.29 16 30 H 0.07 1.28 8.09 -2.39 -0.02 1.26 16 31 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 32 H 0.10 2.62 8.08 -2.38 -0.02 2.60 16 33 H 0.05 1.50 7.63 -2.39 -0.02 1.48 16 34 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 35 H 0.08 3.15 7.75 -2.38 -0.02 3.13 16 36 H 0.35 16.37 3.31 -74.06 -0.25 16.12 16 37 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.07 3.00 7.06 -2.39 -0.02 2.98 16 39 H 0.06 2.83 6.98 -2.38 -0.02 2.81 16 40 H 0.12 3.58 7.46 -2.91 -0.02 3.55 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 43 H 0.07 1.58 7.53 -2.39 -0.02 1.57 16 Total: -1.00 -65.69 343.47 -0.88 -66.57 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: 0.57 Total: 35.51 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 5.08 Total: -28.70 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -5.42 Total: -78.69 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -2.77 Total: -38.14 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.67 Total: 43.45 kcal Total: -65.69 -0.88 -66.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190980915.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.956 kcal (2) G-P(sol) polarization free energy of solvation -65.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds