Wall clock time and date at job start Tue Mar 31 2020 06:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38165 * 120.03103 * 2 1 4 4 C 1.38241 * 120.05914 * 180.29370 * 3 2 1 5 5 C 1.38290 * 120.11082 * 359.68119 * 4 3 2 6 6 C 1.38119 * 120.05415 * 359.97438 * 5 4 3 7 7 C 1.38712 * 120.02825 * 179.67373 * 2 1 3 8 8 O 1.35896 * 120.05603 * 0.02562 * 7 2 1 9 9 C 1.42903 * 117.00381 * 179.72627 * 8 7 2 10 10 C 1.53001 * 109.47257 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46986 * 179.97438 * 10 9 8 12 12 C 1.50693 * 109.47140 * 179.97438 * 11 10 9 13 13 O 1.21280 * 120.00159 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99946 * 179.72593 * 12 11 10 15 15 C 1.46507 * 120.00172 * 180.27396 * 14 12 11 16 16 H 1.09010 * 109.46553 * 34.99918 * 15 14 12 17 17 C 1.52994 * 109.47295 * 275.00274 * 15 14 12 18 18 C 1.50699 * 109.47230 * 154.99762 * 15 14 12 19 19 H 1.08004 * 119.99894 * 5.45804 * 18 15 14 20 20 C 1.37877 * 119.99684 * 185.46535 * 18 15 14 21 21 N 1.31506 * 120.00300 * 9.55518 * 20 18 15 22 22 Si 1.86805 * 119.99591 * 189.55976 * 20 18 15 23 23 H 1.48498 * 109.47321 * 84.99031 * 22 20 18 24 24 H 1.48500 * 109.46803 * 204.99207 * 22 20 18 25 25 H 1.48500 * 109.47183 * 324.99178 * 22 20 18 26 26 H 1.09000 * 109.47277 * 270.32382 * 1 2 3 27 27 H 1.08998 * 109.46924 * 30.32546 * 1 2 3 28 28 H 1.08996 * 109.46958 * 150.32161 * 1 2 3 29 29 H 1.08002 * 119.97236 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.94752 * 179.69642 * 4 3 2 31 31 H 1.08003 * 119.97276 * 180.02562 * 5 4 3 32 32 H 1.07999 * 120.02823 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.47098 * 59.99590 * 9 8 7 34 34 H 1.08998 * 109.46640 * 299.99721 * 9 8 7 35 35 H 1.08996 * 109.47648 * 59.99625 * 10 9 8 36 36 H 1.08998 * 109.46821 * 299.99308 * 10 9 8 37 37 H 1.09010 * 109.47236 * 59.99514 * 11 10 9 38 38 H 1.09002 * 109.47189 * 299.99757 * 11 10 9 39 39 H 0.96998 * 120.00253 * 0.27043 * 14 12 11 40 40 H 1.09005 * 109.46836 * 303.67584 * 17 15 14 41 41 H 1.09001 * 109.47443 * 63.67279 * 17 15 14 42 42 H 1.09003 * 109.47437 * 183.67789 * 17 15 14 43 43 H 0.97003 * 120.00290 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5808 1.1969 -0.0061 5 6 4.2752 0.0009 -0.0056 6 6 3.5887 -1.1975 0.0015 7 6 2.2011 -1.2009 0.0068 8 8 1.5234 -2.3788 0.0130 9 6 2.3034 -3.5762 0.0138 10 6 1.3731 -4.7909 0.0204 11 6 2.2082 -6.0728 0.0206 12 6 1.2920 -7.2692 0.0277 13 8 0.0894 -7.1121 0.0327 14 7 1.8089 -8.5139 0.0235 15 6 0.9182 -9.6771 0.0244 16 1 0.0268 -9.4525 -0.5616 17 6 0.5132 -10.0083 1.4621 18 6 1.6330 -10.8576 -0.5809 19 1 2.6758 -10.7775 -0.8501 20 6 0.9555 -12.0400 -0.7911 21 7 -0.3503 -12.0851 -0.6422 22 14 1.8927 -13.5778 -1.2874 23 1 2.4105 -14.2558 -0.0719 24 1 0.9836 -14.4973 -2.0177 25 1 3.0288 -13.2029 -2.1670 26 1 -0.3634 0.0058 1.0276 27 1 -0.3633 0.8870 -0.5189 28 1 -0.3633 -0.8928 -0.5088 29 1 1.6585 2.1315 0.0004 30 1 4.1195 2.1329 -0.0111 31 1 5.3552 0.0041 -0.0100 32 1 4.1314 -2.1313 0.0024 33 1 2.9356 -3.5974 0.9014 34 1 2.9288 -3.6029 -0.8785 35 1 0.7412 -4.7695 -0.8674 36 1 0.7474 -4.7644 0.9125 37 1 2.8405 -6.0945 0.9083 38 1 2.8337 -6.0991 -0.8717 39 1 2.7707 -8.6397 0.0198 40 1 1.4079 -10.1688 2.0637 41 1 -0.0604 -9.1800 1.8780 42 1 -0.0962 -10.9120 1.4690 43 1 -0.8270 -12.9168 -0.7904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194650464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:00 Heat of formation + Delta-G solvation = -75.549850 kcal Electronic energy + Delta-G solvation = -21987.338483 eV Core-core repulsion = 18610.906435 eV Total energy + Delta-G solvation = -3376.432048 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.42309 -38.97003 -37.70976 -34.92770 -33.69840 -32.86916 -32.33801 -30.24567 -29.25855 -27.23201 -26.69415 -25.22761 -23.26344 -21.89395 -21.45778 -20.59242 -19.40394 -18.24375 -17.10645 -16.49089 -16.20586 -15.85550 -15.54473 -15.20574 -14.97573 -14.63204 -14.16992 -13.86298 -13.62570 -13.33289 -13.04255 -12.80029 -12.48193 -12.41711 -12.19629 -12.13415 -11.78699 -11.54162 -11.50690 -11.38274 -11.04121 -10.99497 -10.88874 -10.76669 -10.63564 -10.37169 -10.28400 -9.13524 -9.07202 -9.00451 -8.51572 -8.30953 -7.93535 -6.15581 -4.21262 1.07614 1.22302 2.97794 3.23958 3.30630 3.31930 3.39527 3.52172 4.12118 4.37729 4.53933 4.58733 4.80731 4.83093 4.90642 5.02462 5.05039 5.11616 5.18008 5.27927 5.37703 5.41567 5.44833 5.53369 5.55706 5.64296 5.81366 6.02277 6.10482 6.11513 6.21720 6.28548 6.32153 6.59096 6.74681 6.88299 7.07373 7.26390 7.42502 7.54409 7.66419 7.84124 8.05860 8.66669 8.78599 9.13020 9.44951 10.92921 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.039448 B = 0.002235 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.624809 B =12526.978999 C =12965.250874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.120 4.120 3 C -0.085 4.085 4 C -0.160 4.160 5 C -0.087 4.087 6 C -0.207 4.207 7 C 0.133 3.867 8 O -0.309 6.309 9 C 0.060 3.940 10 C -0.101 4.101 11 C -0.139 4.139 12 C 0.500 3.500 13 O -0.554 6.554 14 N -0.710 5.710 15 C 0.261 3.739 16 H 0.055 0.945 17 C -0.141 4.141 18 C -0.537 4.537 19 H 0.061 0.939 20 C 0.068 3.932 21 N -0.881 5.881 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.388 0.612 40 H 0.028 0.972 41 H 0.019 0.981 42 H 0.072 0.928 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.992 23.295 1.947 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.120 4.120 3 C -0.103 4.103 4 C -0.178 4.178 5 C -0.105 4.105 6 C -0.226 4.226 7 C 0.087 3.913 8 O -0.222 6.222 9 C -0.015 4.015 10 C -0.139 4.139 11 C -0.179 4.179 12 C 0.285 3.715 13 O -0.433 6.433 14 N -0.358 5.358 15 C 0.159 3.841 16 H 0.073 0.927 17 C -0.200 4.200 18 C -0.575 4.575 19 H 0.079 0.921 20 C -0.136 4.136 21 N -0.517 5.517 22 Si 0.726 3.274 23 H -0.204 1.204 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.144 0.856 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.220 0.780 40 H 0.047 0.953 41 H 0.038 0.962 42 H 0.091 0.909 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.732 23.186 1.931 24.517 hybrid contribution 1.360 -1.097 -0.230 1.762 sum 9.092 22.089 1.701 23.947 Atomic orbital electron populations 1.20624 0.90425 1.02901 1.02388 1.19328 0.96689 0.90397 1.05615 1.20884 0.94140 0.96746 0.98567 1.21020 0.94234 0.98031 1.04500 1.20928 0.99737 0.91915 0.97945 1.21294 0.93063 0.99578 1.08666 1.18887 0.90409 0.85900 0.96076 1.86082 1.35886 1.12174 1.88067 1.22915 0.94496 0.82831 1.01265 1.21210 0.97682 0.89682 1.05366 1.21548 0.98946 0.93422 1.04008 1.20322 0.89120 0.84712 0.77339 1.90670 1.15576 1.86215 1.50854 1.46520 1.10591 1.06334 1.72350 1.18751 0.90536 0.81234 0.93529 0.92711 1.22012 0.99238 1.00675 0.98067 1.21167 0.97121 0.96336 1.42897 0.92098 1.24903 0.94733 0.99048 0.94928 1.69981 1.06452 1.27099 1.48210 0.86516 0.79654 0.82670 0.78575 1.20420 1.21158 1.19921 0.91361 0.91803 0.90860 0.85553 0.86075 0.85946 0.85367 0.91991 0.91975 0.89987 0.90038 0.89303 0.89197 0.77952 0.95291 0.96159 0.90901 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.79 36.00 0.35 -0.64 16 2 C -0.12 -1.27 5.89 -104.47 -0.62 -1.88 16 3 C -0.09 -0.75 9.70 -39.61 -0.38 -1.14 16 4 C -0.16 -1.33 10.04 -39.56 -0.40 -1.72 16 5 C -0.09 -0.76 10.04 -39.61 -0.40 -1.15 16 6 C -0.21 -2.06 9.04 -39.43 -0.36 -2.42 16 7 C 0.13 1.54 6.66 -39.21 -0.26 1.28 16 8 O -0.31 -3.86 9.18 -19.41 -0.18 -4.03 16 9 C 0.06 0.63 4.74 37.16 0.18 0.81 16 10 C -0.10 -1.32 4.87 -26.73 -0.13 -1.45 16 11 C -0.14 -1.79 5.70 -27.89 -0.16 -1.95 16 12 C 0.50 9.63 7.79 -10.99 -0.09 9.54 16 13 O -0.55 -13.11 15.64 5.56 0.09 -13.02 16 14 N -0.71 -14.45 5.07 -54.93 -0.28 -14.73 16 15 C 0.26 6.63 2.42 -69.08 -0.17 6.46 16 16 H 0.06 1.63 7.52 -51.92 -0.39 1.24 16 17 C -0.14 -3.45 9.36 37.15 0.35 -3.11 16 18 C -0.54 -14.18 8.66 -34.44 -0.30 -14.48 16 19 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 20 C 0.07 1.83 5.17 -17.82 -0.09 1.74 16 21 N -0.88 -25.11 12.16 55.43 0.67 -24.43 16 22 Si 0.90 20.56 29.55 -169.99 -5.02 15.54 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.07 0.77 7.53 -51.93 -0.39 0.37 16 29 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 31 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 32 H 0.13 1.08 6.30 -52.49 -0.33 0.75 16 33 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 34 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 35 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 36 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 37 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.39 6.68 8.53 -40.82 -0.35 6.33 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 1.92 6.83 -51.93 -0.35 1.57 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 360.06 15.07 5.43 5.43 Total: -1.00 -31.91 360.06 -8.56 -40.47 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.80 Total: 4.90 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -2.47 Total: -10.12 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.40 Total: -39.16 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.09 Total: -17.05 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.91 -8.56 -40.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194650464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.079 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds