Wall clock time and date at job start Tue Mar 31 2020 06:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38165 * 120.03103 * 2 1 4 4 C 1.38241 * 120.05914 * 180.29370 * 3 2 1 5 5 C 1.38290 * 120.11082 * 359.68119 * 4 3 2 6 6 C 1.38119 * 120.05415 * 359.97438 * 5 4 3 7 7 C 1.38712 * 120.02825 * 179.67373 * 2 1 3 8 8 O 1.35896 * 120.05603 * 0.02562 * 7 2 1 9 9 C 1.42903 * 117.00381 * 179.72627 * 8 7 2 10 10 C 1.53001 * 109.47257 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.46986 * 179.97438 * 10 9 8 12 12 C 1.50693 * 109.47140 * 179.97438 * 11 10 9 13 13 O 1.21280 * 120.00159 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99946 * 179.72593 * 12 11 10 15 15 C 1.46507 * 120.00172 * 180.27396 * 14 12 11 16 16 H 1.09010 * 109.46553 * 34.99918 * 15 14 12 17 17 C 1.52994 * 109.47295 * 275.00274 * 15 14 12 18 18 C 1.50699 * 109.47230 * 154.99762 * 15 14 12 19 19 H 1.08004 * 119.99894 * 5.45804 * 18 15 14 20 20 C 1.37877 * 119.99684 * 185.46535 * 18 15 14 21 21 N 1.31506 * 120.00300 * 9.55518 * 20 18 15 22 22 Si 1.86805 * 119.99591 * 189.55976 * 20 18 15 23 23 H 1.48498 * 109.47321 * 84.99031 * 22 20 18 24 24 H 1.48500 * 109.46803 * 204.99207 * 22 20 18 25 25 H 1.48500 * 109.47183 * 324.99178 * 22 20 18 26 26 H 1.09000 * 109.47277 * 270.32382 * 1 2 3 27 27 H 1.08998 * 109.46924 * 30.32546 * 1 2 3 28 28 H 1.08996 * 109.46958 * 150.32161 * 1 2 3 29 29 H 1.08002 * 119.97236 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.94752 * 179.69642 * 4 3 2 31 31 H 1.08003 * 119.97276 * 180.02562 * 5 4 3 32 32 H 1.07999 * 120.02823 * 180.02562 * 6 5 4 33 33 H 1.08996 * 109.47098 * 59.99590 * 9 8 7 34 34 H 1.08998 * 109.46640 * 299.99721 * 9 8 7 35 35 H 1.08996 * 109.47648 * 59.99625 * 10 9 8 36 36 H 1.08998 * 109.46821 * 299.99308 * 10 9 8 37 37 H 1.09010 * 109.47236 * 59.99514 * 11 10 9 38 38 H 1.09002 * 109.47189 * 299.99757 * 11 10 9 39 39 H 0.96998 * 120.00253 * 0.27043 * 14 12 11 40 40 H 1.09005 * 109.46836 * 303.67584 * 17 15 14 41 41 H 1.09001 * 109.47443 * 63.67279 * 17 15 14 42 42 H 1.09003 * 109.47437 * 183.67789 * 17 15 14 43 43 H 0.97003 * 120.00290 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5808 1.1969 -0.0061 5 6 4.2752 0.0009 -0.0056 6 6 3.5887 -1.1975 0.0015 7 6 2.2011 -1.2009 0.0068 8 8 1.5234 -2.3788 0.0130 9 6 2.3034 -3.5762 0.0138 10 6 1.3731 -4.7909 0.0204 11 6 2.2082 -6.0728 0.0206 12 6 1.2920 -7.2692 0.0277 13 8 0.0894 -7.1121 0.0327 14 7 1.8089 -8.5139 0.0235 15 6 0.9182 -9.6771 0.0244 16 1 0.0268 -9.4525 -0.5616 17 6 0.5132 -10.0083 1.4621 18 6 1.6330 -10.8576 -0.5809 19 1 2.6758 -10.7775 -0.8501 20 6 0.9555 -12.0400 -0.7911 21 7 -0.3503 -12.0851 -0.6422 22 14 1.8927 -13.5778 -1.2874 23 1 2.4105 -14.2558 -0.0719 24 1 0.9836 -14.4973 -2.0177 25 1 3.0288 -13.2029 -2.1670 26 1 -0.3634 0.0058 1.0276 27 1 -0.3633 0.8870 -0.5189 28 1 -0.3633 -0.8928 -0.5088 29 1 1.6585 2.1315 0.0004 30 1 4.1195 2.1329 -0.0111 31 1 5.3552 0.0041 -0.0100 32 1 4.1314 -2.1313 0.0024 33 1 2.9356 -3.5974 0.9014 34 1 2.9288 -3.6029 -0.8785 35 1 0.7412 -4.7695 -0.8674 36 1 0.7474 -4.7644 0.9125 37 1 2.8405 -6.0945 0.9083 38 1 2.8337 -6.0991 -0.8717 39 1 2.7707 -8.6397 0.0198 40 1 1.4079 -10.1688 2.0637 41 1 -0.0604 -9.1800 1.8780 42 1 -0.0962 -10.9120 1.4690 43 1 -0.8270 -12.9168 -0.7904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194650464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:00 Heat of formation + Delta-G solvation = -95.059436 kcal Electronic energy + Delta-G solvation = -21988.184482 eV Core-core repulsion = 18610.906435 eV Total energy + Delta-G solvation = -3377.278047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.18507 -40.55229 -38.49317 -36.76497 -34.81044 -34.28011 -33.60019 -31.27035 -30.75759 -28.24334 -27.51206 -27.28842 -24.33454 -22.84385 -22.57960 -21.78329 -21.06226 -19.18826 -18.64976 -17.53313 -17.39567 -17.11303 -16.78002 -16.48329 -16.21288 -15.88940 -15.27018 -14.94892 -14.81087 -14.39360 -14.23652 -14.00063 -13.96914 -13.73915 -13.26121 -13.15308 -13.06697 -12.86413 -12.83030 -12.65529 -12.43073 -12.36739 -12.23298 -12.19247 -12.12798 -11.62886 -11.55322 -11.16130 -10.68737 -10.56604 -9.74255 -9.73979 -9.04156 -8.20893 -6.34634 0.40448 0.52511 1.44629 1.46028 1.55643 1.86366 2.11722 2.39047 2.77673 2.84409 3.11348 3.78044 3.89028 3.93083 3.93784 4.08614 4.22724 4.28347 4.41321 4.43944 4.46768 4.55499 4.66518 4.70973 4.75646 4.79775 4.80799 4.88510 5.00390 5.02938 5.07700 5.24270 5.32611 5.42769 5.45128 5.55684 5.61532 5.62816 5.63391 5.90836 5.93710 6.03684 6.51032 6.74801 6.99837 7.32703 7.60980 8.88430 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.039448 B = 0.002235 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.624809 B =12526.978999 C =12965.250874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.142 4.142 3 C -0.090 4.090 4 C -0.161 4.161 5 C -0.092 4.092 6 C -0.216 4.216 7 C 0.105 3.895 8 O -0.333 6.333 9 C 0.065 3.935 10 C -0.097 4.097 11 C -0.121 4.121 12 C 0.493 3.507 13 O -0.606 6.606 14 N -0.706 5.706 15 C 0.266 3.734 16 H -0.001 1.001 17 C -0.128 4.128 18 C -0.547 4.547 19 H 0.076 0.924 20 C 0.012 3.988 21 N -0.921 5.921 22 Si 0.972 3.028 23 H -0.270 1.270 24 H -0.289 1.289 25 H -0.261 1.261 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.407 0.593 40 H 0.050 0.950 41 H 0.015 0.985 42 H 0.047 0.953 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.547 24.452 1.974 27.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.143 4.143 3 C -0.108 4.108 4 C -0.179 4.179 5 C -0.110 4.110 6 C -0.234 4.234 7 C 0.060 3.940 8 O -0.248 6.248 9 C -0.009 4.009 10 C -0.135 4.135 11 C -0.160 4.160 12 C 0.280 3.720 13 O -0.489 6.489 14 N -0.355 5.355 15 C 0.162 3.838 16 H 0.017 0.983 17 C -0.187 4.187 18 C -0.585 4.585 19 H 0.094 0.906 20 C -0.188 4.188 21 N -0.559 5.559 22 Si 0.796 3.204 23 H -0.195 1.195 24 H -0.215 1.215 25 H -0.186 1.186 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.072 0.928 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.165 0.835 32 H 0.160 0.840 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.243 0.757 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.066 0.934 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.342 24.369 1.962 26.951 hybrid contribution 0.221 -1.348 -0.243 1.388 sum 11.564 23.021 1.719 25.819 Atomic orbital electron populations 1.20603 0.90348 1.02783 1.02389 1.19625 0.97193 0.91038 1.06445 1.21192 0.94771 0.96925 0.97882 1.21407 0.94174 0.99142 1.03151 1.21299 1.01096 0.91564 0.97052 1.21537 0.92476 1.00884 1.08513 1.19181 0.91376 0.85671 0.97768 1.86034 1.37054 1.12997 1.88671 1.22864 0.93682 0.81273 1.03094 1.21099 0.97874 0.91387 1.03166 1.21503 0.97773 0.89470 1.07298 1.21460 0.89334 0.85791 0.75366 1.90653 1.18449 1.86963 1.52823 1.46274 1.10999 1.05642 1.72619 1.18339 0.89558 0.82974 0.92942 0.98345 1.21836 0.99582 0.99212 0.98053 1.21529 0.97768 0.96612 1.42572 0.90561 1.25858 0.95459 1.02496 0.94956 1.70141 1.08324 1.27868 1.49545 0.85368 0.78295 0.78254 0.78483 1.19493 1.21539 1.18561 0.91344 0.90024 0.92794 0.83470 0.83549 0.83504 0.83959 0.89949 0.90152 0.92474 0.92205 0.85569 0.85925 0.75704 0.93112 0.96626 0.93411 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 9.79 71.24 0.70 -1.28 16 2 C -0.14 -2.94 5.89 -19.77 -0.12 -3.05 16 3 C -0.09 -1.43 9.70 22.25 0.22 -1.21 16 4 C -0.16 -2.24 10.04 22.28 0.22 -2.01 16 5 C -0.09 -1.35 10.04 22.25 0.22 -1.12 16 6 C -0.22 -3.86 9.04 22.37 0.20 -3.65 16 7 C 0.11 2.36 6.66 22.51 0.15 2.51 16 8 O -0.33 -8.33 9.18 -92.38 -0.85 -9.18 16 9 C 0.07 1.28 4.74 71.98 0.34 1.62 16 10 C -0.10 -2.49 4.87 30.59 0.15 -2.34 16 11 C -0.12 -2.84 5.70 29.85 0.17 -2.67 16 12 C 0.49 18.90 7.79 87.65 0.68 19.59 16 13 O -0.61 -29.96 15.64 -3.03 -0.05 -30.01 16 14 N -0.71 -28.32 5.07 -446.09 -2.26 -30.58 16 15 C 0.27 13.78 2.42 44.24 0.11 13.89 16 16 H 0.00 -0.09 7.52 -2.38 -0.02 -0.11 16 17 C -0.13 -6.39 9.36 71.98 0.67 -5.72 16 18 C -0.55 -28.77 8.66 25.60 0.22 -28.55 16 19 H 0.08 3.69 7.74 -2.91 -0.02 3.67 16 20 C 0.01 0.67 5.17 84.66 0.44 1.11 16 21 N -0.92 -53.96 12.16 21.45 0.26 -53.70 16 22 Si 0.97 41.84 29.55 68.60 2.03 43.87 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 28 H 0.05 1.20 7.53 -2.39 -0.02 1.18 16 29 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 30 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 31 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 32 H 0.14 1.99 6.30 -2.91 -0.02 1.97 16 33 H 0.08 1.27 7.66 -2.39 -0.02 1.25 16 34 H 0.08 1.27 7.66 -2.39 -0.02 1.26 16 35 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 36 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 37 H 0.13 2.12 8.14 -2.38 -0.02 2.10 16 38 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.41 13.11 8.53 -92.71 -0.79 12.32 16 40 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 41 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.05 2.60 6.83 -2.39 -0.02 2.58 16 43 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -73.25 360.06 3.72 -69.54 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.20 Total: 22.95 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 4.38 Total: -12.89 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -2.00 Total: -84.28 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.90 Total: -39.18 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -73.25 3.72 -69.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194650464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.521 kcal (2) G-P(sol) polarization free energy of solvation -73.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds