Wall clock time and date at job start Tue Mar 31 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 119.94903 * 2 1 4 4 C 1.38144 * 120.05706 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.02757 * 180.02562 * 4 3 2 6 6 C 1.38725 * 119.94214 * 0.02562 * 4 3 2 7 7 O 1.35906 * 120.05347 * 179.97438 * 6 4 3 8 8 C 1.42905 * 116.99310 * 90.00022 * 7 6 4 9 9 C 1.50709 * 109.46650 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99688 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99943 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.47078 * 34.99474 * 12 11 9 14 14 C 1.53000 * 109.47021 * 275.00054 * 12 11 9 15 15 C 1.50694 * 109.47115 * 154.99835 * 12 11 9 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.38729 * 119.89359 * 0.27628 * 6 4 3 24 24 C 1.50699 * 120.03166 * 179.72441 * 23 6 4 25 25 C 1.38147 * 119.94022 * 359.42418 * 23 6 4 26 26 H 1.09004 * 109.47037 * 89.99565 * 1 2 3 27 27 H 1.08998 * 109.47669 * 210.00072 * 1 2 3 28 28 H 1.09004 * 109.47007 * 330.00360 * 1 2 3 29 29 H 1.08003 * 119.96879 * 0.02562 * 3 2 1 30 30 H 1.09003 * 109.47292 * 269.98078 * 5 4 3 31 31 H 1.09000 * 109.47138 * 29.97363 * 5 4 3 32 32 H 1.08998 * 109.47418 * 149.97833 * 5 4 3 33 33 H 1.08998 * 109.46927 * 60.00528 * 8 7 6 34 34 H 1.08995 * 109.47572 * 300.00088 * 8 7 6 35 35 H 0.96997 * 119.99849 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47089 * 59.99825 * 14 12 11 37 37 H 1.08995 * 109.47131 * 179.97438 * 14 12 11 38 38 H 1.09002 * 109.47106 * 299.99878 * 14 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.47263 * 89.99740 * 24 23 6 41 41 H 1.09009 * 109.46988 * 209.99679 * 24 23 6 42 42 H 1.08997 * 109.46926 * 329.99577 * 24 23 6 43 43 H 1.07997 * 119.97470 * 180.31860 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1980 0.0000 4 6 3.5787 1.2006 0.0005 5 6 4.3304 2.5067 0.0011 6 6 4.2734 -0.0002 0.0005 7 8 5.6324 -0.0003 0.0005 8 6 6.2811 -0.0003 1.2739 9 6 7.7752 -0.0010 1.0765 10 8 8.2387 -0.0010 -0.0443 11 7 8.5961 -0.0017 2.1454 12 6 10.0485 -0.0019 1.9536 13 1 10.2985 0.5880 1.0716 14 6 10.5373 -1.4389 1.7614 15 6 10.7152 0.5979 3.1646 16 1 10.1170 0.9449 3.9941 17 6 12.0890 0.7046 3.2133 18 7 12.8175 0.2825 2.2030 19 14 12.9154 1.4487 4.7142 20 1 14.3877 1.4484 4.5198 21 1 12.4405 2.8433 4.9004 22 1 12.5752 0.6453 5.9159 23 6 3.5786 -1.2009 -0.0058 24 6 4.3301 -2.5072 -0.0121 25 6 2.1971 -1.1982 -0.0001 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8901 0.5138 29 1 1.6559 2.1325 0.0004 30 1 4.5123 2.8217 -1.0264 31 1 3.7398 3.2656 0.5145 32 1 5.2826 2.3778 0.5156 33 1 5.9881 -0.8903 1.8308 34 1 5.9882 0.8896 1.8309 35 1 8.2253 -0.0021 3.0417 36 1 10.0551 -1.8726 0.8854 37 1 11.6179 -1.4389 1.6182 38 1 10.2873 -2.0287 2.6432 39 1 13.7840 0.3579 2.2371 40 1 4.5109 -2.8273 1.0140 41 1 3.7400 -3.2634 -0.5300 42 1 5.2828 -2.3757 -0.5249 43 1 1.6557 -2.1326 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194668013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:13 Heat of formation + Delta-G solvation = -69.148545 kcal Electronic energy + Delta-G solvation = -22931.843100 eV Core-core repulsion = 19555.688633 eV Total energy + Delta-G solvation = -3376.154467 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.41460 -38.86253 -37.25232 -34.75657 -33.68968 -32.85089 -32.41245 -29.70893 -28.12433 -27.62134 -26.81619 -25.60761 -25.24021 -21.35929 -21.06436 -20.70989 -19.50241 -17.76063 -17.34813 -16.80092 -15.69015 -15.40010 -14.95760 -14.85374 -14.58019 -14.16026 -14.02923 -13.55716 -13.29734 -13.20846 -13.14029 -13.01539 -12.71870 -12.56601 -12.55012 -12.32830 -11.88796 -11.68810 -11.38885 -11.29488 -11.14221 -11.10560 -10.95893 -10.74192 -10.34148 -10.24419 -9.84391 -9.07665 -9.01071 -8.71019 -8.56362 -8.41818 -7.95010 -6.13383 -4.23115 1.04801 1.20913 3.14326 3.24729 3.30104 3.30753 3.32827 3.66739 4.28701 4.48660 4.61039 4.62624 4.70090 5.09631 5.10009 5.18278 5.18907 5.31572 5.32629 5.35291 5.35673 5.45606 5.51825 5.55743 5.62870 5.64875 5.71784 5.75610 6.05199 6.20747 6.30592 6.38964 6.49803 6.67320 6.81554 6.95569 7.13496 7.42103 7.48258 7.60496 7.69267 7.90196 8.13451 8.61615 8.76243 9.08218 9.44251 10.92581 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030165 B = 0.003018 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.011580 B = 9276.170153 C = 9667.766354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.118 4.118 4 C -0.091 4.091 5 C -0.113 4.113 6 C 0.088 3.912 7 O -0.304 6.304 8 C 0.047 3.953 9 C 0.503 3.497 10 O -0.532 6.532 11 N -0.707 5.707 12 C 0.267 3.733 13 H 0.049 0.951 14 C -0.148 4.148 15 C -0.535 4.535 16 H 0.061 0.939 17 C 0.066 3.934 18 N -0.883 5.883 19 Si 0.903 3.097 20 H -0.286 1.286 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.091 4.091 24 C -0.117 4.117 25 C -0.118 4.118 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.124 0.876 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.389 0.611 36 H 0.015 0.985 37 H 0.091 0.909 38 H 0.027 0.973 39 H 0.265 0.735 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.694 -1.226 -1.058 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.088 4.088 3 C -0.136 4.136 4 C -0.092 4.092 5 C -0.169 4.169 6 C 0.044 3.956 7 O -0.220 6.220 8 C -0.031 4.031 9 C 0.286 3.714 10 O -0.409 6.409 11 N -0.357 5.357 12 C 0.166 3.834 13 H 0.067 0.933 14 C -0.206 4.206 15 C -0.574 4.574 16 H 0.079 0.921 17 C -0.137 4.137 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.211 1.211 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.092 4.092 24 C -0.173 4.173 25 C -0.136 4.136 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.142 0.858 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.221 0.779 36 H 0.034 0.966 37 H 0.109 0.891 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.988 -1.242 -2.096 22.123 hybrid contribution 0.170 0.359 1.448 1.502 sum -21.818 -0.883 -0.648 21.846 Atomic orbital electron populations 1.20767 0.91121 1.02685 1.02270 1.19890 0.96042 0.93025 0.99871 1.20770 0.92761 0.97676 1.02356 1.20252 0.93940 0.95278 0.99690 1.20731 1.00106 0.93118 1.02983 1.18430 0.83156 0.91531 1.02516 1.86138 1.14464 1.94207 1.27148 1.22554 0.92598 1.02312 0.85618 1.19947 0.87070 0.78316 0.86087 1.90697 1.77179 1.49267 1.23730 1.46440 1.09280 1.72832 1.07161 1.18760 0.72534 0.94076 0.98066 0.93274 1.22088 1.04197 0.97329 0.97028 1.21171 0.91882 1.41676 1.02660 0.92078 1.24894 0.97129 0.95149 0.96530 1.69895 1.06059 1.45694 1.30370 0.86491 0.78290 0.79657 0.82548 1.21105 1.20162 1.20158 1.20245 0.93929 0.95260 0.99739 1.20753 1.00923 0.93162 1.02478 1.20777 0.92776 0.97660 1.02366 0.91208 0.91593 0.91589 0.85813 0.90674 0.91615 0.91079 0.90620 0.90531 0.77899 0.96574 0.89072 0.95422 0.92463 0.91247 0.91467 0.90276 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.09 -0.87 5.88 -104.60 -0.62 -1.49 16 3 C -0.12 -1.24 9.35 -39.61 -0.37 -1.61 16 4 C -0.09 -1.15 5.89 -104.48 -0.62 -1.77 16 5 C -0.11 -1.31 9.79 36.01 0.35 -0.96 16 6 C 0.09 1.25 5.67 -39.22 -0.22 1.03 16 7 O -0.30 -5.12 7.85 -39.36 -0.31 -5.43 16 8 C 0.05 0.73 6.17 36.01 0.22 0.95 16 9 C 0.50 10.28 7.87 -10.98 -0.09 10.19 16 10 O -0.53 -13.37 16.16 -14.36 -0.23 -13.60 16 11 N -0.71 -14.67 5.07 -54.93 -0.28 -14.95 16 12 C 0.27 6.81 2.56 -69.09 -0.18 6.63 16 13 H 0.05 1.45 7.58 -51.92 -0.39 1.06 16 14 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 15 C -0.54 -14.12 8.73 -34.44 -0.30 -14.42 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 18 N -0.88 -24.89 11.32 55.43 0.63 -24.26 16 19 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 C -0.09 -1.14 5.89 -104.47 -0.62 -1.76 16 24 C -0.12 -1.33 9.79 36.01 0.35 -0.98 16 25 C -0.12 -1.24 9.35 -39.60 -0.37 -1.61 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.07 0.93 6.33 -51.93 -0.33 0.60 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.02 7.26 -51.93 -0.38 0.64 16 35 H 0.39 6.79 8.54 -40.82 -0.35 6.44 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.63 8.09 -51.92 -0.42 0.21 16 42 H 0.08 1.07 7.53 -51.93 -0.39 0.68 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 359.44 15.07 5.42 5.42 Total: -1.00 -31.93 359.44 -8.39 -40.32 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -6.76 Total: 4.84 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -1.84 Total: -7.85 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.35 Total: -39.20 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.54 Total: -19.03 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.93 -8.39 -40.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194668013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.833 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds