Wall clock time and date at job start Tue Mar 31 2020 06:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 119.94903 * 2 1 4 4 C 1.38144 * 120.05706 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.02757 * 180.02562 * 4 3 2 6 6 C 1.38725 * 119.94214 * 0.02562 * 4 3 2 7 7 O 1.35906 * 120.05347 * 179.97438 * 6 4 3 8 8 C 1.42905 * 116.99310 * 90.00022 * 7 6 4 9 9 C 1.50709 * 109.46650 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99688 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99943 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.47078 * 34.99474 * 12 11 9 14 14 C 1.53000 * 109.47021 * 275.00054 * 12 11 9 15 15 C 1.50694 * 109.47115 * 154.99835 * 12 11 9 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.38729 * 119.89359 * 0.27628 * 6 4 3 24 24 C 1.50699 * 120.03166 * 179.72441 * 23 6 4 25 25 C 1.38147 * 119.94022 * 359.42418 * 23 6 4 26 26 H 1.09004 * 109.47037 * 89.99565 * 1 2 3 27 27 H 1.08998 * 109.47669 * 210.00072 * 1 2 3 28 28 H 1.09004 * 109.47007 * 330.00360 * 1 2 3 29 29 H 1.08003 * 119.96879 * 0.02562 * 3 2 1 30 30 H 1.09003 * 109.47292 * 269.98078 * 5 4 3 31 31 H 1.09000 * 109.47138 * 29.97363 * 5 4 3 32 32 H 1.08998 * 109.47418 * 149.97833 * 5 4 3 33 33 H 1.08998 * 109.46927 * 60.00528 * 8 7 6 34 34 H 1.08995 * 109.47572 * 300.00088 * 8 7 6 35 35 H 0.96997 * 119.99849 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47089 * 59.99825 * 14 12 11 37 37 H 1.08995 * 109.47131 * 179.97438 * 14 12 11 38 38 H 1.09002 * 109.47106 * 299.99878 * 14 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.47263 * 89.99740 * 24 23 6 41 41 H 1.09009 * 109.46988 * 209.99679 * 24 23 6 42 42 H 1.08997 * 109.46926 * 329.99577 * 24 23 6 43 43 H 1.07997 * 119.97470 * 180.31860 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1980 0.0000 4 6 3.5787 1.2006 0.0005 5 6 4.3304 2.5067 0.0011 6 6 4.2734 -0.0002 0.0005 7 8 5.6324 -0.0003 0.0005 8 6 6.2811 -0.0003 1.2739 9 6 7.7752 -0.0010 1.0765 10 8 8.2387 -0.0010 -0.0443 11 7 8.5961 -0.0017 2.1454 12 6 10.0485 -0.0019 1.9536 13 1 10.2985 0.5880 1.0716 14 6 10.5373 -1.4389 1.7614 15 6 10.7152 0.5979 3.1646 16 1 10.1170 0.9449 3.9941 17 6 12.0890 0.7046 3.2133 18 7 12.8175 0.2825 2.2030 19 14 12.9154 1.4487 4.7142 20 1 14.3877 1.4484 4.5198 21 1 12.4405 2.8433 4.9004 22 1 12.5752 0.6453 5.9159 23 6 3.5786 -1.2009 -0.0058 24 6 4.3301 -2.5072 -0.0121 25 6 2.1971 -1.1982 -0.0001 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8901 0.5138 29 1 1.6559 2.1325 0.0004 30 1 4.5123 2.8217 -1.0264 31 1 3.7398 3.2656 0.5145 32 1 5.2826 2.3778 0.5156 33 1 5.9881 -0.8903 1.8308 34 1 5.9882 0.8896 1.8309 35 1 8.2253 -0.0021 3.0417 36 1 10.0551 -1.8726 0.8854 37 1 11.6179 -1.4389 1.6182 38 1 10.2873 -2.0287 2.6432 39 1 13.7840 0.3579 2.2371 40 1 4.5109 -2.8273 1.0140 41 1 3.7400 -3.2634 -0.5300 42 1 5.2828 -2.3757 -0.5249 43 1 1.6557 -2.1326 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194668013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:13 Heat of formation + Delta-G solvation = -87.642803 kcal Electronic energy + Delta-G solvation = -22932.645071 eV Core-core repulsion = 19555.688633 eV Total energy + Delta-G solvation = -3376.956438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44545 -40.42754 -38.39407 -36.69022 -34.55966 -34.37738 -33.66439 -31.49770 -29.21394 -28.72615 -27.64682 -27.35251 -26.54741 -23.18662 -21.93443 -21.59471 -21.32104 -19.14428 -18.79771 -17.80985 -17.51860 -17.10893 -16.42611 -16.25266 -15.57181 -15.37819 -14.96907 -14.86161 -14.58390 -14.38413 -14.09594 -14.01314 -13.91382 -13.80669 -13.63668 -13.54939 -13.23900 -13.01982 -12.88665 -12.75876 -12.69882 -12.28317 -12.20897 -12.16469 -12.12522 -11.95645 -11.14197 -10.92823 -10.77281 -10.58673 -9.82626 -9.55599 -9.29886 -8.18242 -6.36433 0.15420 0.36205 1.45217 1.47642 1.55422 1.67961 1.94620 2.41037 2.63974 3.11611 3.17668 3.79957 3.81809 3.86538 3.93098 4.07648 4.13490 4.34618 4.42474 4.50973 4.55751 4.69404 4.70957 4.72113 4.73145 4.78588 4.90177 4.90480 4.97512 5.06892 5.10074 5.25783 5.32651 5.39960 5.45025 5.56945 5.58745 5.64915 5.65100 5.83865 5.90472 6.07194 6.52353 6.70367 6.89637 7.30029 7.48240 8.88120 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030165 B = 0.003018 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.011580 B = 9276.170153 C = 9667.766354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.084 4.084 3 C -0.120 4.120 4 C -0.104 4.104 5 C -0.112 4.112 6 C 0.053 3.947 7 O -0.331 6.331 8 C 0.061 3.939 9 C 0.500 3.500 10 O -0.586 6.586 11 N -0.699 5.699 12 C 0.272 3.728 13 H -0.003 1.003 14 C -0.135 4.135 15 C -0.548 4.548 16 H 0.077 0.923 17 C 0.013 3.987 18 N -0.918 5.918 19 Si 0.975 3.025 20 H -0.287 1.287 21 H -0.270 1.270 22 H -0.262 1.262 23 C -0.103 4.103 24 C -0.114 4.114 25 C -0.119 4.119 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.148 0.852 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.408 0.592 36 H 0.010 0.990 37 H 0.067 0.933 38 H 0.044 0.956 39 H 0.266 0.734 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.048 0.952 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.684 -1.072 0.932 25.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.084 4.084 3 C -0.137 4.137 4 C -0.104 4.104 5 C -0.168 4.168 6 C 0.010 3.990 7 O -0.248 6.248 8 C -0.017 4.017 9 C 0.286 3.714 10 O -0.467 6.467 11 N -0.350 5.350 12 C 0.169 3.831 13 H 0.015 0.985 14 C -0.193 4.193 15 C -0.586 4.586 16 H 0.095 0.905 17 C -0.187 4.187 18 N -0.557 5.557 19 Si 0.799 3.201 20 H -0.213 1.213 21 H -0.195 1.195 22 H -0.187 1.187 23 C -0.104 4.104 24 C -0.170 4.170 25 C -0.137 4.137 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.165 0.835 30 H 0.087 0.913 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.244 0.756 36 H 0.029 0.971 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -25.026 -1.091 -0.070 25.050 hybrid contribution 0.994 0.306 0.752 1.283 sum -24.033 -0.785 0.682 24.055 Atomic orbital electron populations 1.20839 0.88587 1.03997 1.03263 1.20321 0.97860 0.92448 0.97777 1.21074 0.91940 0.99180 1.01551 1.20421 0.94991 0.94879 1.00151 1.20725 0.99606 0.93763 1.02707 1.18727 0.82000 0.92999 1.05299 1.86104 1.16404 1.94582 1.27666 1.22401 0.88431 1.04710 0.86119 1.20810 0.89294 0.76408 0.84884 1.90667 1.78632 1.51512 1.25856 1.46145 1.07661 1.72694 1.08522 1.18367 0.75305 0.93373 0.96043 0.98505 1.21911 1.02555 0.97415 0.97462 1.21512 0.92433 1.41684 1.03004 0.90532 1.25841 0.97882 0.95446 0.99511 1.70056 1.06280 1.46806 1.32514 0.85355 0.76813 0.78973 0.78937 1.21259 1.19518 1.18697 1.20426 0.94971 0.94899 1.00080 1.20733 0.99746 0.93574 1.02974 1.21085 0.91964 0.99154 1.01507 0.90209 0.90316 0.90355 0.83466 0.91260 0.89102 0.93031 0.87842 0.88047 0.75636 0.97081 0.91384 0.93732 0.92495 0.90258 0.89423 0.93245 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 71.24 0.71 -0.35 16 2 C -0.08 -1.40 5.88 -19.85 -0.12 -1.52 16 3 C -0.12 -2.23 9.35 22.25 0.21 -2.02 16 4 C -0.10 -2.52 5.89 -19.77 -0.12 -2.64 16 5 C -0.11 -2.54 9.79 71.24 0.70 -1.85 16 6 C 0.05 1.50 5.67 22.50 0.13 1.63 16 7 O -0.33 -11.41 7.85 -73.46 -0.58 -11.99 16 8 C 0.06 1.86 6.17 71.24 0.44 2.30 16 9 C 0.50 21.01 7.87 87.66 0.69 21.70 16 10 O -0.59 -31.11 16.16 16.00 0.26 -30.85 16 11 N -0.70 -29.31 5.07 -446.09 -2.26 -31.57 16 12 C 0.27 14.33 2.56 44.24 0.11 14.45 16 13 H 0.00 -0.19 7.58 -2.38 -0.02 -0.20 16 14 C -0.13 -6.93 9.26 71.98 0.67 -6.27 16 15 C -0.55 -28.99 8.73 25.60 0.22 -28.76 16 16 H 0.08 3.72 7.74 -2.91 -0.02 3.70 16 17 C 0.01 0.72 5.30 84.66 0.45 1.16 16 18 N -0.92 -53.08 11.32 21.45 0.24 -52.84 16 19 Si 0.97 41.80 29.54 68.60 2.03 43.82 16 20 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 21 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 23 C -0.10 -2.47 5.89 -19.77 -0.12 -2.59 16 24 C -0.11 -2.51 9.79 71.24 0.70 -1.82 16 25 C -0.12 -2.20 9.35 22.26 0.21 -1.99 16 26 H 0.08 0.66 8.14 -2.38 -0.02 0.65 16 27 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 28 H 0.08 0.59 8.08 -2.38 -0.02 0.57 16 29 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.09 1.53 8.09 -2.39 -0.02 1.51 16 32 H 0.05 1.35 6.33 -2.39 -0.02 1.34 16 33 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.10 2.60 7.26 -2.39 -0.02 2.58 16 35 H 0.41 13.85 8.54 -92.71 -0.79 13.06 16 36 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.07 3.83 6.07 -2.39 -0.01 3.81 16 38 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.09 1.51 8.09 -2.38 -0.02 1.49 16 42 H 0.05 1.38 7.53 -2.39 -0.02 1.36 16 43 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -72.48 359.44 4.79 -67.70 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.21 Total: 24.30 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 4.88 Total: -8.57 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -2.02 Total: -84.41 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -0.32 Total: -42.84 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -72.48 4.79 -67.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194668013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.944 kcal (2) G-P(sol) polarization free energy of solvation -72.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds