Wall clock time and date at job start Tue Mar 31 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38282 * 119.94349 * 2 1 4 4 C 1.38121 * 120.05427 * 179.97438 * 3 2 1 5 5 C 1.38756 * 119.94816 * 0.02562 * 4 3 2 6 6 O 1.35897 * 120.05843 * 180.02562 * 5 4 3 7 7 C 1.42900 * 117.00162 * 0.02562 * 6 5 4 8 8 C 1.52999 * 109.46904 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46585 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00336 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99852 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00312 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46824 * 324.99495 * 12 11 9 14 14 C 1.52998 * 109.47488 * 84.99823 * 12 11 9 15 15 C 1.50704 * 109.47156 * 205.00023 * 12 11 9 16 16 H 1.07992 * 120.00120 * 356.68518 * 15 12 11 17 17 C 1.37875 * 119.99522 * 176.68397 * 15 12 11 18 18 N 1.31513 * 120.00501 * 352.38401 * 17 15 12 19 19 Si 1.86806 * 119.99715 * 172.66612 * 17 15 12 20 20 H 1.48497 * 109.47165 * 264.79730 * 19 17 15 21 21 H 1.48503 * 109.46939 * 24.79275 * 19 17 15 22 22 H 1.48498 * 109.47436 * 144.79640 * 19 17 15 23 23 C 1.38714 * 119.88476 * 0.28004 * 5 4 3 24 24 C 1.50700 * 120.03068 * 179.72265 * 23 5 4 25 25 C 1.38170 * 119.94264 * 359.40003 * 23 5 4 26 26 H 1.09005 * 109.46701 * 90.00095 * 1 2 3 27 27 H 1.09000 * 109.47207 * 209.99863 * 1 2 3 28 28 H 1.08999 * 109.47292 * 330.00134 * 1 2 3 29 29 H 1.07994 * 119.97506 * 0.02562 * 3 2 1 30 30 H 1.08003 * 120.02992 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46695 * 59.99860 * 7 6 5 32 32 H 1.08992 * 109.47333 * 300.00153 * 7 6 5 33 33 H 1.09000 * 109.47289 * 60.00555 * 8 7 6 34 34 H 1.09000 * 109.47408 * 299.99742 * 8 7 6 35 35 H 0.97006 * 119.99961 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.47232 * 177.81999 * 14 12 11 37 37 H 1.09001 * 109.47019 * 297.81934 * 14 12 11 38 38 H 1.09001 * 109.47267 * 57.81201 * 14 12 11 39 39 H 0.96997 * 120.00137 * 180.27656 * 18 17 15 40 40 H 1.08997 * 109.47124 * 89.99657 * 24 23 5 41 41 H 1.08995 * 109.47234 * 209.99982 * 24 23 5 42 42 H 1.08998 * 109.46860 * 329.99882 * 24 23 5 43 43 H 1.07999 * 119.97565 * 180.31596 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1982 0.0000 4 6 3.5784 1.2009 0.0005 5 6 4.2735 0.0000 0.0005 6 8 5.6324 0.0000 0.0016 7 6 6.2812 1.2732 0.0032 8 6 7.7980 1.0727 0.0049 9 6 8.4821 2.4155 0.0072 10 8 7.8216 3.4326 0.0080 11 7 9.8281 2.4860 0.0084 12 6 10.4932 3.7913 0.0113 13 1 9.9086 4.4982 -0.5774 14 6 10.6116 4.3003 1.4493 15 6 11.8691 3.6553 -0.5883 16 1 12.2342 2.6839 -0.8874 17 6 12.6617 4.7710 -0.7550 18 7 12.1664 5.9688 -0.5325 19 14 14.4371 4.5819 -1.3045 20 1 15.3251 4.5705 -0.1144 21 1 14.5914 3.3065 -2.0494 22 1 14.8061 5.7181 -2.1865 23 6 3.5787 -1.2006 -0.0059 24 6 4.3303 -2.5069 -0.0122 25 6 2.1970 -1.1980 0.0003 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6559 2.1327 0.0004 30 1 4.1171 2.1370 0.0001 31 1 5.9876 1.8294 0.8935 32 1 5.9891 1.8310 -0.8864 33 1 8.0919 0.5163 -0.8852 34 1 8.0899 0.5151 0.8948 35 1 10.3564 1.6724 0.0074 36 1 11.1408 5.2531 1.4550 37 1 9.6152 4.4356 1.8700 38 1 11.1629 3.5747 2.0473 39 1 12.7229 6.7540 -0.6536 40 1 4.5111 -2.8270 1.0139 41 1 3.7403 -3.2630 -0.5301 42 1 5.2831 -2.3753 -0.5250 43 1 1.6556 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194711831.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:48 Heat of formation + Delta-G solvation = -75.993625 kcal Electronic energy + Delta-G solvation = -22239.184238 eV Core-core repulsion = 18862.732947 eV Total energy + Delta-G solvation = -3376.451291 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.38797 -39.02530 -37.73507 -34.89143 -33.49236 -32.46829 -31.90812 -31.28534 -28.89278 -27.38633 -26.27199 -25.27913 -24.48473 -21.96780 -20.80540 -20.74513 -19.44961 -18.25247 -16.90098 -16.34459 -16.29943 -15.60654 -15.23109 -15.00088 -14.63011 -14.46174 -14.10215 -13.88688 -13.57812 -13.31665 -13.29878 -12.93291 -12.67835 -12.52788 -12.35665 -12.09497 -11.79541 -11.68397 -11.47465 -11.44419 -11.07883 -11.01199 -10.81010 -10.77793 -10.60980 -10.37620 -10.30572 -9.16583 -9.10152 -8.93569 -8.54986 -8.05708 -7.99403 -6.17132 -4.23782 1.20552 1.30594 3.01677 3.22616 3.28680 3.30534 3.32483 3.59164 4.18454 4.39985 4.61272 4.66425 4.77961 4.90424 5.05091 5.10955 5.12196 5.16739 5.25085 5.36764 5.39090 5.44762 5.55837 5.59574 5.66798 5.71578 5.75708 5.83436 5.86869 6.08896 6.24696 6.32841 6.47343 6.71527 6.73787 6.86859 7.05774 7.36927 7.37913 7.50245 7.64320 7.82346 8.04222 8.59705 8.74434 9.04532 9.42697 10.91024 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037071 B = 0.002457 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.124797 B =11395.218582 C =11867.086257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.128 4.128 3 C -0.085 4.085 4 C -0.200 4.200 5 C 0.130 3.870 6 O -0.316 6.316 7 C 0.077 3.923 8 C -0.141 4.141 9 C 0.506 3.494 10 O -0.558 6.558 11 N -0.706 5.706 12 C 0.262 3.738 13 H 0.054 0.946 14 C -0.143 4.143 15 C -0.536 4.536 16 H 0.062 0.938 17 C 0.067 3.933 18 N -0.882 5.882 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.273 1.273 22 H -0.285 1.285 23 C -0.118 4.118 24 C -0.104 4.104 25 C -0.086 4.086 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.390 0.610 36 H 0.078 0.922 37 H 0.018 0.982 38 H 0.028 0.972 39 H 0.265 0.735 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.973 -14.782 1.729 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.128 4.128 3 C -0.103 4.103 4 C -0.218 4.218 5 C 0.085 3.915 6 O -0.229 6.229 7 C 0.001 3.999 8 C -0.181 4.181 9 C 0.290 3.710 10 O -0.438 6.438 11 N -0.353 5.353 12 C 0.161 3.839 13 H 0.072 0.928 14 C -0.202 4.202 15 C -0.575 4.575 16 H 0.080 0.920 17 C -0.136 4.136 18 N -0.519 5.519 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.198 1.198 22 H -0.211 1.211 23 C -0.119 4.119 24 C -0.161 4.161 25 C -0.104 4.104 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.151 0.849 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.223 0.777 36 H 0.096 0.904 37 H 0.037 0.963 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.213 -13.980 1.720 23.024 hybrid contribution 1.289 -0.072 -0.256 1.316 sum -16.925 -14.052 1.464 22.046 Atomic orbital electron populations 1.20698 0.91238 1.02464 1.02009 1.19784 0.96060 0.93031 1.03927 1.20818 0.93322 0.97640 0.98558 1.21385 0.95423 0.97531 1.07494 1.18802 0.82447 0.93549 0.96715 1.85957 1.16099 1.32530 1.88356 1.22471 0.91576 0.82841 1.02968 1.21516 0.93551 0.97688 1.05378 1.20085 0.83574 0.89852 0.77441 1.90672 1.64819 1.36944 1.51316 1.46497 1.05071 1.11854 1.71899 1.18775 0.92158 0.79268 0.93747 0.92847 1.22019 0.98147 1.02189 0.97811 1.21195 0.99315 0.94301 1.42650 0.91989 1.24901 0.98807 0.94962 0.94978 1.69967 1.36088 0.97662 1.48163 0.86460 0.84410 0.77865 0.78529 1.20534 1.19802 1.21099 1.19252 0.93251 0.93539 1.05822 1.20594 1.00173 0.93081 1.02214 1.20710 0.92358 0.97661 0.99712 0.91558 0.91840 0.91786 0.85918 0.84916 0.91128 0.91082 0.88297 0.88374 0.77713 0.90367 0.96284 0.95253 0.92542 0.91491 0.91908 0.91011 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.13 -1.27 5.88 -104.60 -0.62 -1.89 16 3 C -0.09 -0.93 9.69 -39.61 -0.38 -1.31 16 4 C -0.20 -2.50 9.04 -39.43 -0.36 -2.86 16 5 C 0.13 1.71 6.66 -39.21 -0.26 1.45 16 6 O -0.32 -4.28 9.18 -19.42 -0.18 -4.46 16 7 C 0.08 1.07 4.03 37.16 0.15 1.22 16 8 C -0.14 -1.95 6.07 -27.88 -0.17 -2.12 16 9 C 0.51 9.68 7.79 -10.98 -0.09 9.59 16 10 O -0.56 -12.85 15.64 5.56 0.09 -12.76 16 11 N -0.71 -14.28 5.07 -54.93 -0.28 -14.56 16 12 C 0.26 6.59 2.45 -69.08 -0.17 6.42 16 13 H 0.05 1.56 7.57 -51.93 -0.39 1.17 16 14 C -0.14 -3.48 9.32 37.16 0.35 -3.14 16 15 C -0.54 -14.08 8.69 -34.44 -0.30 -14.38 16 16 H 0.06 1.55 7.73 -52.49 -0.41 1.15 16 17 C 0.07 1.80 5.21 -17.82 -0.09 1.71 16 18 N -0.88 -24.91 11.92 55.43 0.66 -24.25 16 19 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 23 C -0.12 -1.35 5.89 -104.47 -0.62 -1.97 16 24 C -0.10 -0.98 9.79 36.01 0.35 -0.63 16 25 C -0.09 -0.87 9.35 -39.60 -0.37 -1.24 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 28 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 30 H 0.13 1.65 6.30 -52.48 -0.33 1.32 16 31 H 0.07 1.02 7.62 -51.93 -0.40 0.62 16 32 H 0.07 1.03 7.62 -51.93 -0.40 0.64 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.39 6.73 8.53 -40.82 -0.35 6.38 16 36 H 0.08 2.06 6.60 -51.93 -0.34 1.72 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 42 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 43 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 359.59 15.07 5.42 5.42 Total: -1.00 -30.83 359.59 -8.30 -39.14 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.78 Total: 5.53 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -2.21 Total: -9.54 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.38 Total: -38.81 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.09 Total: -17.22 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.83 -8.30 -39.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194711831.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.858 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds