Wall clock time and date at job start Tue Mar 31 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38282 * 119.94349 * 2 1 4 4 C 1.38121 * 120.05427 * 179.97438 * 3 2 1 5 5 C 1.38756 * 119.94816 * 0.02562 * 4 3 2 6 6 O 1.35897 * 120.05843 * 180.02562 * 5 4 3 7 7 C 1.42900 * 117.00162 * 0.02562 * 6 5 4 8 8 C 1.52999 * 109.46904 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46585 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00336 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99852 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00312 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46824 * 324.99495 * 12 11 9 14 14 C 1.52998 * 109.47488 * 84.99823 * 12 11 9 15 15 C 1.50704 * 109.47156 * 205.00023 * 12 11 9 16 16 H 1.07992 * 120.00120 * 356.68518 * 15 12 11 17 17 C 1.37875 * 119.99522 * 176.68397 * 15 12 11 18 18 N 1.31513 * 120.00501 * 352.38401 * 17 15 12 19 19 Si 1.86806 * 119.99715 * 172.66612 * 17 15 12 20 20 H 1.48497 * 109.47165 * 264.79730 * 19 17 15 21 21 H 1.48503 * 109.46939 * 24.79275 * 19 17 15 22 22 H 1.48498 * 109.47436 * 144.79640 * 19 17 15 23 23 C 1.38714 * 119.88476 * 0.28004 * 5 4 3 24 24 C 1.50700 * 120.03068 * 179.72265 * 23 5 4 25 25 C 1.38170 * 119.94264 * 359.40003 * 23 5 4 26 26 H 1.09005 * 109.46701 * 90.00095 * 1 2 3 27 27 H 1.09000 * 109.47207 * 209.99863 * 1 2 3 28 28 H 1.08999 * 109.47292 * 330.00134 * 1 2 3 29 29 H 1.07994 * 119.97506 * 0.02562 * 3 2 1 30 30 H 1.08003 * 120.02992 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46695 * 59.99860 * 7 6 5 32 32 H 1.08992 * 109.47333 * 300.00153 * 7 6 5 33 33 H 1.09000 * 109.47289 * 60.00555 * 8 7 6 34 34 H 1.09000 * 109.47408 * 299.99742 * 8 7 6 35 35 H 0.97006 * 119.99961 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.47232 * 177.81999 * 14 12 11 37 37 H 1.09001 * 109.47019 * 297.81934 * 14 12 11 38 38 H 1.09001 * 109.47267 * 57.81201 * 14 12 11 39 39 H 0.96997 * 120.00137 * 180.27656 * 18 17 15 40 40 H 1.08997 * 109.47124 * 89.99657 * 24 23 5 41 41 H 1.08995 * 109.47234 * 209.99982 * 24 23 5 42 42 H 1.08998 * 109.46860 * 329.99882 * 24 23 5 43 43 H 1.07999 * 119.97565 * 180.31596 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1982 0.0000 4 6 3.5784 1.2009 0.0005 5 6 4.2735 0.0000 0.0005 6 8 5.6324 0.0000 0.0016 7 6 6.2812 1.2732 0.0032 8 6 7.7980 1.0727 0.0049 9 6 8.4821 2.4155 0.0072 10 8 7.8216 3.4326 0.0080 11 7 9.8281 2.4860 0.0084 12 6 10.4932 3.7913 0.0113 13 1 9.9086 4.4982 -0.5774 14 6 10.6116 4.3003 1.4493 15 6 11.8691 3.6553 -0.5883 16 1 12.2342 2.6839 -0.8874 17 6 12.6617 4.7710 -0.7550 18 7 12.1664 5.9688 -0.5325 19 14 14.4371 4.5819 -1.3045 20 1 15.3251 4.5705 -0.1144 21 1 14.5914 3.3065 -2.0494 22 1 14.8061 5.7181 -2.1865 23 6 3.5787 -1.2006 -0.0059 24 6 4.3303 -2.5069 -0.0122 25 6 2.1970 -1.1980 0.0003 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6559 2.1327 0.0004 30 1 4.1171 2.1370 0.0001 31 1 5.9876 1.8294 0.8935 32 1 5.9891 1.8310 -0.8864 33 1 8.0919 0.5163 -0.8852 34 1 8.0899 0.5151 0.8948 35 1 10.3564 1.6724 0.0074 36 1 11.1408 5.2531 1.4550 37 1 9.6152 4.4356 1.8700 38 1 11.1629 3.5747 2.0473 39 1 12.7229 6.7540 -0.6536 40 1 4.5111 -2.8270 1.0139 41 1 3.7403 -3.2630 -0.5301 42 1 5.2831 -2.3753 -0.5250 43 1 1.6556 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194711831.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:48 Heat of formation + Delta-G solvation = -94.122249 kcal Electronic energy + Delta-G solvation = -22239.970355 eV Core-core repulsion = 18862.732947 eV Total energy + Delta-G solvation = -3377.237408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34419 -40.57162 -38.70386 -36.76274 -34.40193 -34.28077 -32.99468 -32.31335 -30.69035 -28.09154 -27.34224 -27.09722 -25.67452 -23.25944 -22.21504 -21.62595 -21.11395 -19.36817 -18.59441 -17.50525 -17.41205 -17.16655 -16.95283 -16.01347 -15.89072 -15.83193 -15.27225 -14.81807 -14.60614 -14.54266 -14.34228 -14.10270 -14.01262 -13.82469 -13.46381 -13.32905 -12.97984 -12.94109 -12.80103 -12.70382 -12.60459 -12.38473 -12.33136 -12.20244 -12.14039 -11.67986 -11.62050 -11.15468 -10.80990 -10.58669 -9.79792 -9.76780 -8.93314 -8.21185 -6.35685 0.35970 0.44461 1.44680 1.45138 1.56081 1.74841 1.88457 2.39194 2.74653 2.85079 3.11158 3.64802 3.84850 3.88365 3.92216 4.04155 4.11234 4.27805 4.38213 4.42578 4.58035 4.71562 4.71657 4.73085 4.79271 4.80683 4.86104 4.88279 4.90213 5.02999 5.03815 5.15799 5.36600 5.39942 5.41706 5.51276 5.58956 5.62922 5.68149 5.86932 5.89810 6.02997 6.39513 6.72789 6.90973 7.30827 7.51150 8.87691 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037071 B = 0.002457 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.124797 B =11395.218582 C =11867.086257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.127 4.127 3 C -0.098 4.098 4 C -0.217 4.217 5 C 0.100 3.900 6 O -0.316 6.316 7 C 0.084 3.916 8 C -0.123 4.123 9 C 0.503 3.497 10 O -0.602 6.602 11 N -0.702 5.702 12 C 0.267 3.733 13 H 0.001 0.999 14 C -0.130 4.130 15 C -0.547 4.547 16 H 0.076 0.924 17 C 0.014 3.986 18 N -0.920 5.920 19 Si 0.972 3.028 20 H -0.272 1.272 21 H -0.261 1.261 22 H -0.288 1.288 23 C -0.126 4.126 24 C -0.102 4.102 25 C -0.088 4.088 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.136 0.864 30 H 0.121 0.879 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.408 0.592 36 H 0.053 0.947 37 H 0.016 0.984 38 H 0.047 0.953 39 H 0.265 0.735 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.061 0.939 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.366 -17.663 1.711 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.127 4.127 3 C -0.116 4.116 4 C -0.236 4.236 5 C 0.055 3.945 6 O -0.231 6.231 7 C 0.008 3.992 8 C -0.163 4.163 9 C 0.290 3.710 10 O -0.485 6.485 11 N -0.351 5.351 12 C 0.164 3.836 13 H 0.019 0.981 14 C -0.189 4.189 15 C -0.585 4.585 16 H 0.094 0.906 17 C -0.187 4.187 18 N -0.558 5.558 19 Si 0.796 3.204 20 H -0.198 1.198 21 H -0.185 1.185 22 H -0.214 1.214 23 C -0.127 4.127 24 C -0.159 4.159 25 C -0.106 4.106 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.154 0.846 30 H 0.139 0.861 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.244 0.756 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.080 0.920 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.613 -16.915 1.706 25.209 hybrid contribution 1.262 0.819 -0.255 1.526 sum -17.351 -16.096 1.451 23.712 Atomic orbital electron populations 1.20759 0.88966 1.03600 1.02949 1.20195 0.97765 0.92582 1.02178 1.21075 0.92817 0.99008 0.98692 1.21454 0.96382 0.97177 1.08571 1.19105 0.82203 0.94502 0.98680 1.85914 1.16693 1.31578 1.88867 1.22258 0.91826 0.83190 1.01895 1.21379 0.92659 0.94344 1.07906 1.20931 0.82952 0.91385 0.75683 1.90657 1.65613 1.39243 1.52946 1.46234 1.05786 1.10849 1.72216 1.18370 0.91534 0.80556 0.93161 0.98091 1.21845 0.97848 1.01407 0.97798 1.21544 0.99621 0.94912 1.42426 0.90630 1.25827 1.03198 0.94566 0.95063 1.70117 1.37727 0.98541 1.49383 0.85341 0.78879 0.77995 0.78174 1.19787 1.18496 1.21411 1.19618 0.94104 0.93714 1.05226 1.20628 0.99839 0.92591 1.02811 1.21092 0.91941 0.98917 0.98656 0.90584 0.90281 0.91158 0.84584 0.86066 0.92233 0.92454 0.85799 0.85498 0.75609 0.92838 0.96526 0.93357 0.92567 0.90813 0.89790 0.91956 0.82838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 71.24 0.71 -0.51 16 2 C -0.13 -2.30 5.88 -19.85 -0.12 -2.42 16 3 C -0.10 -2.10 9.69 22.25 0.22 -1.88 16 4 C -0.22 -5.60 9.04 22.37 0.20 -5.40 16 5 C 0.10 2.61 6.66 22.51 0.15 2.76 16 6 O -0.32 -8.48 9.18 -92.39 -0.85 -9.33 16 7 C 0.08 2.38 4.03 71.98 0.29 2.67 16 8 C -0.12 -3.25 6.07 29.85 0.18 -3.07 16 9 C 0.50 19.32 7.79 87.66 0.68 20.00 16 10 O -0.60 -28.84 15.64 -3.03 -0.05 -28.89 16 11 N -0.70 -28.20 5.07 -446.09 -2.26 -30.46 16 12 C 0.27 13.73 2.45 44.25 0.11 13.84 16 13 H 0.00 0.07 7.57 -2.39 -0.02 0.05 16 14 C -0.13 -6.47 9.32 71.98 0.67 -5.80 16 15 C -0.55 -28.66 8.69 25.60 0.22 -28.44 16 16 H 0.08 3.67 7.73 -2.91 -0.02 3.65 16 17 C 0.01 0.73 5.21 84.65 0.44 1.17 16 18 N -0.92 -53.22 11.92 21.45 0.26 -52.97 16 19 Si 0.97 41.76 29.54 68.60 2.03 43.79 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 22 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 23 C -0.13 -2.71 5.89 -19.77 -0.12 -2.83 16 24 C -0.10 -1.72 9.79 71.24 0.70 -1.02 16 25 C -0.09 -1.57 9.35 22.26 0.21 -1.36 16 26 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 28 H 0.07 0.73 8.08 -2.39 -0.02 0.72 16 29 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.12 3.27 6.30 -2.91 -0.02 3.26 16 31 H 0.06 1.79 7.62 -2.39 -0.02 1.77 16 32 H 0.06 1.75 7.62 -2.39 -0.02 1.73 16 33 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.41 13.39 8.53 -92.70 -0.79 12.60 16 36 H 0.05 2.90 6.60 -2.39 -0.02 2.89 16 37 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.05 2.15 8.14 -2.39 -0.02 2.14 16 39 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 40 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 42 H 0.06 1.16 7.53 -2.39 -0.02 1.14 16 43 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -68.79 359.59 3.88 -64.90 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.21 Total: 25.23 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 4.55 Total: -12.28 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -2.01 Total: -83.42 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -0.90 Total: -38.22 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -68.79 3.88 -64.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194711831.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.221 kcal (2) G-P(sol) polarization free energy of solvation -68.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds