Wall clock time and date at job start Tue Mar 31 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38286 * 119.94280 * 2 1 4 4 C 1.38118 * 120.05494 * 179.97438 * 3 2 1 5 5 C 1.38748 * 119.94408 * 0.02562 * 4 3 2 6 6 O 1.35901 * 120.05726 * 179.97438 * 5 4 3 7 7 C 1.42905 * 116.99937 * 0.02562 * 6 5 4 8 8 C 1.53001 * 109.46871 * 179.97438 * 7 6 5 9 9 C 1.50709 * 109.46716 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99688 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99943 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.47078 * 34.99474 * 12 11 9 14 14 C 1.53000 * 109.47021 * 275.00054 * 12 11 9 15 15 C 1.50694 * 109.47115 * 154.99835 * 12 11 9 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.38712 * 119.89177 * 0.27924 * 5 4 3 24 24 C 1.50696 * 120.03292 * 179.72328 * 23 5 4 25 25 C 1.38174 * 119.93715 * 359.40261 * 23 5 4 26 26 H 1.08997 * 109.47069 * 90.00199 * 1 2 3 27 27 H 1.08993 * 109.46734 * 210.00176 * 1 2 3 28 28 H 1.09003 * 109.47006 * 329.99916 * 1 2 3 29 29 H 1.08005 * 119.97137 * 359.97438 * 3 2 1 30 30 H 1.08005 * 120.03066 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47222 * 59.99303 * 7 6 5 32 32 H 1.09000 * 109.46816 * 299.99217 * 7 6 5 33 33 H 1.08998 * 109.46869 * 60.00269 * 8 7 6 34 34 H 1.08995 * 109.47564 * 299.99869 * 8 7 6 35 35 H 0.96997 * 119.99849 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.47131 * 179.97438 * 14 12 11 37 37 H 1.09002 * 109.47106 * 299.99878 * 14 12 11 38 38 H 1.08998 * 109.47089 * 59.99825 * 14 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.47349 * 89.99985 * 24 23 5 41 41 H 1.09008 * 109.47152 * 210.00229 * 24 23 5 42 42 H 1.09000 * 109.46896 * 330.00175 * 24 23 5 43 43 H 1.07996 * 119.96675 * 180.31964 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 0.0005 5 6 4.2734 0.0001 0.0005 6 8 5.6324 0.0000 0.0005 7 6 6.2812 1.2733 0.0011 8 6 7.7980 1.0728 0.0017 9 6 8.4822 2.4156 0.0016 10 8 7.8216 3.4327 0.0017 11 7 9.8282 2.4862 0.0015 12 6 10.4932 3.7914 0.0021 13 1 9.9081 4.4972 0.5919 14 6 10.6126 4.3036 -1.4347 15 6 11.8686 3.6542 0.6024 16 1 12.2128 2.6910 0.9493 17 6 12.6873 4.7584 0.7098 18 7 12.2680 5.9314 0.2878 19 14 14.3919 4.5883 1.4546 20 1 14.3160 4.8112 2.9208 21 1 14.9150 3.2244 1.1875 22 1 15.3000 5.5944 0.8473 23 6 3.5788 -1.2006 -0.0059 24 6 4.3304 -2.5067 -0.0122 25 6 2.1971 -1.1979 0.0003 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6559 2.1328 -0.0004 30 1 4.1172 2.1371 0.0010 31 1 5.9883 1.8300 0.8913 32 1 5.9884 1.8306 -0.8887 33 1 8.0912 0.5160 -0.8884 34 1 8.0906 0.5156 0.8916 35 1 10.3564 1.6726 0.0011 36 1 11.1070 5.2749 -1.4343 37 1 11.1977 3.5979 -2.0245 38 1 9.6178 4.4028 -1.8689 39 1 12.8439 6.7083 0.3637 40 1 4.5112 -2.8269 1.0139 41 1 3.7404 -3.2629 -0.5302 42 1 5.2832 -2.3751 -0.5249 43 1 1.6558 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194711850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:51 Heat of formation + Delta-G solvation = -75.019115 kcal Electronic energy + Delta-G solvation = -22242.826202 eV Core-core repulsion = 18866.417168 eV Total energy + Delta-G solvation = -3376.409034 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.38908 -39.02438 -37.73542 -34.90030 -33.49272 -32.48037 -31.90870 -31.28164 -28.82052 -27.38703 -26.27047 -25.29942 -24.47943 -21.95912 -20.80636 -20.72446 -19.44280 -18.25247 -16.90576 -16.35858 -16.28506 -15.61806 -15.22506 -15.00226 -14.63296 -14.46415 -14.12274 -13.87050 -13.57005 -13.31614 -13.31481 -12.93974 -12.68817 -12.51037 -12.35797 -12.09776 -11.73771 -11.67262 -11.46630 -11.43902 -11.09761 -10.99491 -10.80514 -10.76453 -10.60941 -10.33915 -10.26460 -9.15614 -9.08273 -8.93683 -8.58252 -8.05783 -7.97710 -6.15257 -4.24740 1.20434 1.30514 3.01634 3.22840 3.28617 3.29990 3.32070 3.59075 4.18087 4.40066 4.61187 4.66282 4.77843 4.90366 5.05021 5.10891 5.12057 5.17152 5.25034 5.36785 5.38980 5.44674 5.55814 5.59513 5.66813 5.71569 5.75586 5.83393 5.86808 6.08782 6.24576 6.32725 6.47236 6.71454 6.78829 6.92587 7.11139 7.36837 7.39971 7.51165 7.65741 7.87313 8.11431 8.59662 8.73395 9.04556 9.42745 10.90741 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036895 B = 0.002455 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.729173 B =11403.236434 C =11862.313797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.128 4.128 3 C -0.085 4.085 4 C -0.200 4.200 5 C 0.131 3.869 6 O -0.316 6.316 7 C 0.077 3.923 8 C -0.141 4.141 9 C 0.506 3.494 10 O -0.558 6.558 11 N -0.706 5.706 12 C 0.263 3.737 13 H 0.049 0.951 14 C -0.147 4.147 15 C -0.535 4.535 16 H 0.062 0.938 17 C 0.065 3.935 18 N -0.883 5.883 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.273 1.273 22 H -0.285 1.285 23 C -0.118 4.118 24 C -0.104 4.104 25 C -0.086 4.086 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.391 0.609 36 H 0.090 0.910 37 H 0.027 0.973 38 H 0.014 0.986 39 H 0.265 0.735 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.092 -14.652 -1.265 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.128 4.128 3 C -0.103 4.103 4 C -0.218 4.218 5 C 0.085 3.915 6 O -0.229 6.229 7 C 0.001 3.999 8 C -0.181 4.181 9 C 0.290 3.710 10 O -0.438 6.438 11 N -0.353 5.353 12 C 0.162 3.838 13 H 0.067 0.933 14 C -0.206 4.206 15 C -0.573 4.573 16 H 0.080 0.920 17 C -0.138 4.138 18 N -0.521 5.521 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.198 1.198 22 H -0.211 1.211 23 C -0.119 4.119 24 C -0.161 4.161 25 C -0.104 4.104 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.141 0.859 30 H 0.151 0.849 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.223 0.777 36 H 0.109 0.891 37 H 0.046 0.954 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.317 -13.855 -1.284 23.002 hybrid contribution 1.230 -0.086 0.373 1.288 sum -17.087 -13.941 -0.912 22.071 Atomic orbital electron populations 1.20698 0.91236 1.02472 1.02001 1.19784 0.96061 0.93030 1.03929 1.20820 0.93321 0.97640 0.98556 1.21382 0.95423 0.97531 1.07499 1.18801 0.82448 0.93550 0.96714 1.85960 1.16099 1.32529 1.88358 1.22473 0.91578 0.82839 1.02962 1.21517 0.93550 0.97693 1.05376 1.20087 0.83577 0.89849 0.77450 1.90671 1.64820 1.36958 1.51364 1.46511 1.05062 1.11891 1.71859 1.18771 0.91882 0.79113 0.94052 0.93331 1.22079 0.97813 1.03364 0.97324 1.21213 0.99147 0.95445 1.41494 0.92022 1.24903 0.98681 0.95044 0.95150 1.69904 1.36995 0.99409 1.45760 0.86429 0.83338 0.77942 0.79269 1.20544 1.19831 1.21054 1.19252 0.93252 0.93539 1.05822 1.20595 1.00158 0.93078 1.02231 1.20708 0.92358 0.97663 0.99709 0.91564 0.91838 0.91783 0.85917 0.84917 0.91082 0.91133 0.88382 0.88297 0.77701 0.89100 0.95415 0.96655 0.92540 0.91475 0.91911 0.91020 0.85681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.13 -1.27 5.88 -104.60 -0.62 -1.89 16 3 C -0.09 -0.93 9.69 -39.61 -0.38 -1.31 16 4 C -0.20 -2.50 9.04 -39.44 -0.36 -2.86 16 5 C 0.13 1.71 6.66 -39.22 -0.26 1.45 16 6 O -0.32 -4.28 9.18 -19.43 -0.18 -4.46 16 7 C 0.08 1.07 4.03 37.16 0.15 1.22 16 8 C -0.14 -1.96 6.07 -27.88 -0.17 -2.13 16 9 C 0.51 9.70 7.79 -10.98 -0.09 9.61 16 10 O -0.56 -12.87 15.65 5.56 0.09 -12.78 16 11 N -0.71 -14.33 5.07 -54.93 -0.28 -14.61 16 12 C 0.26 6.64 2.56 -69.09 -0.18 6.47 16 13 H 0.05 1.42 7.58 -51.92 -0.39 1.02 16 14 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 15 C -0.53 -14.05 8.73 -34.44 -0.30 -14.35 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.88 -24.77 11.32 55.43 0.63 -24.15 16 19 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.12 -1.35 5.89 -104.47 -0.62 -1.97 16 24 C -0.10 -0.98 9.79 36.00 0.35 -0.63 16 25 C -0.09 -0.87 9.35 -39.61 -0.37 -1.24 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 28 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 30 H 0.13 1.65 6.30 -52.48 -0.33 1.32 16 31 H 0.07 1.03 7.62 -51.93 -0.40 0.64 16 32 H 0.07 1.02 7.62 -51.93 -0.40 0.62 16 33 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.39 6.77 8.54 -40.82 -0.35 6.43 16 36 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.47 8.09 -51.92 -0.42 0.05 16 42 H 0.07 0.72 7.53 -51.93 -0.39 0.33 16 43 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 358.67 15.07 5.41 5.41 Total: -1.00 -30.69 358.67 -8.33 -39.03 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.75 Total: 5.73 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -2.22 Total: -9.66 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.35 Total: -38.76 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.09 Total: -17.24 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.69 -8.33 -39.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194711850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.992 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds