Wall clock time and date at job start Tue Mar 31 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38286 * 119.94280 * 2 1 4 4 C 1.38118 * 120.05494 * 179.97438 * 3 2 1 5 5 C 1.38748 * 119.94408 * 0.02562 * 4 3 2 6 6 O 1.35901 * 120.05726 * 179.97438 * 5 4 3 7 7 C 1.42905 * 116.99937 * 0.02562 * 6 5 4 8 8 C 1.53001 * 109.46871 * 179.97438 * 7 6 5 9 9 C 1.50709 * 109.46716 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99688 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99796 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99943 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.47078 * 34.99474 * 12 11 9 14 14 C 1.53000 * 109.47021 * 275.00054 * 12 11 9 15 15 C 1.50694 * 109.47115 * 154.99835 * 12 11 9 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47353 * 269.99586 * 19 17 15 21 21 H 1.48501 * 109.47293 * 30.00037 * 19 17 15 22 22 H 1.48504 * 109.46680 * 149.99835 * 19 17 15 23 23 C 1.38712 * 119.89177 * 0.27924 * 5 4 3 24 24 C 1.50696 * 120.03292 * 179.72328 * 23 5 4 25 25 C 1.38174 * 119.93715 * 359.40261 * 23 5 4 26 26 H 1.08997 * 109.47069 * 90.00199 * 1 2 3 27 27 H 1.08993 * 109.46734 * 210.00176 * 1 2 3 28 28 H 1.09003 * 109.47006 * 329.99916 * 1 2 3 29 29 H 1.08005 * 119.97137 * 359.97438 * 3 2 1 30 30 H 1.08005 * 120.03066 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.47222 * 59.99303 * 7 6 5 32 32 H 1.09000 * 109.46816 * 299.99217 * 7 6 5 33 33 H 1.08998 * 109.46869 * 60.00269 * 8 7 6 34 34 H 1.08995 * 109.47564 * 299.99869 * 8 7 6 35 35 H 0.96997 * 119.99849 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.47131 * 179.97438 * 14 12 11 37 37 H 1.09002 * 109.47106 * 299.99878 * 14 12 11 38 38 H 1.08998 * 109.47089 * 59.99825 * 14 12 11 39 39 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.47349 * 89.99985 * 24 23 5 41 41 H 1.09008 * 109.47152 * 210.00229 * 24 23 5 42 42 H 1.09000 * 109.46896 * 330.00175 * 24 23 5 43 43 H 1.07996 * 119.96675 * 180.31964 * 25 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 0.0005 5 6 4.2734 0.0001 0.0005 6 8 5.6324 0.0000 0.0005 7 6 6.2812 1.2733 0.0011 8 6 7.7980 1.0728 0.0017 9 6 8.4822 2.4156 0.0016 10 8 7.8216 3.4327 0.0017 11 7 9.8282 2.4862 0.0015 12 6 10.4932 3.7914 0.0021 13 1 9.9081 4.4972 0.5919 14 6 10.6126 4.3036 -1.4347 15 6 11.8686 3.6542 0.6024 16 1 12.2128 2.6910 0.9493 17 6 12.6873 4.7584 0.7098 18 7 12.2680 5.9314 0.2878 19 14 14.3919 4.5883 1.4546 20 1 14.3160 4.8112 2.9208 21 1 14.9150 3.2244 1.1875 22 1 15.3000 5.5944 0.8473 23 6 3.5788 -1.2006 -0.0059 24 6 4.3304 -2.5067 -0.0122 25 6 2.1971 -1.1979 0.0003 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6559 2.1328 -0.0004 30 1 4.1172 2.1371 0.0010 31 1 5.9883 1.8300 0.8913 32 1 5.9884 1.8306 -0.8887 33 1 8.0912 0.5160 -0.8884 34 1 8.0906 0.5156 0.8916 35 1 10.3564 1.6726 0.0011 36 1 11.1070 5.2749 -1.4343 37 1 11.1977 3.5979 -2.0245 38 1 9.6178 4.4028 -1.8689 39 1 12.8439 6.7083 0.3637 40 1 4.5112 -2.8269 1.0139 41 1 3.7404 -3.2629 -0.5302 42 1 5.2832 -2.3751 -0.5249 43 1 1.6558 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194711850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:51 Heat of formation + Delta-G solvation = -92.942097 kcal Electronic energy + Delta-G solvation = -22243.603401 eV Core-core repulsion = 18866.417168 eV Total energy + Delta-G solvation = -3377.186232 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34541 -40.57393 -38.70473 -36.77785 -34.40724 -34.28369 -32.99024 -32.30983 -30.63258 -28.09228 -27.36754 -27.09765 -25.66850 -23.24442 -22.20748 -21.62674 -21.11324 -19.36896 -18.59982 -17.52097 -17.39865 -17.16760 -16.96244 -16.02995 -15.88731 -15.83245 -15.27479 -14.79410 -14.61874 -14.56904 -14.35398 -14.10255 -14.00912 -13.76245 -13.43413 -13.32964 -13.00678 -12.87758 -12.82311 -12.73491 -12.61194 -12.36696 -12.27250 -12.20223 -12.13426 -11.68096 -11.62176 -11.12690 -10.83480 -10.59781 -9.79121 -9.76860 -8.93421 -8.18738 -6.36245 0.35894 0.44415 1.44994 1.45274 1.56122 1.74526 1.88299 2.39030 2.74598 2.85043 3.11965 3.64605 3.84773 3.88272 3.92012 4.04038 4.11015 4.27705 4.38148 4.42405 4.57921 4.71312 4.71776 4.74849 4.79159 4.80607 4.86009 4.90165 4.91073 5.02905 5.08086 5.15753 5.36516 5.40141 5.42195 5.51191 5.59168 5.67114 5.68087 5.88104 5.89789 6.08441 6.39409 6.71612 6.90847 7.30807 7.50881 8.87602 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036895 B = 0.002455 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.729173 B =11403.236434 C =11862.313797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.127 4.127 3 C -0.098 4.098 4 C -0.217 4.217 5 C 0.100 3.900 6 O -0.317 6.317 7 C 0.084 3.916 8 C -0.123 4.123 9 C 0.503 3.497 10 O -0.602 6.602 11 N -0.702 5.702 12 C 0.269 3.731 13 H -0.001 1.001 14 C -0.134 4.134 15 C -0.547 4.547 16 H 0.075 0.925 17 C 0.012 3.988 18 N -0.918 5.918 19 Si 0.974 3.026 20 H -0.278 1.278 21 H -0.259 1.259 22 H -0.285 1.285 23 C -0.126 4.126 24 C -0.102 4.102 25 C -0.088 4.088 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.136 0.864 30 H 0.121 0.879 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.408 0.592 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.012 0.988 39 H 0.265 0.735 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.062 0.938 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.549 -17.466 -1.076 25.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.127 4.127 3 C -0.116 4.116 4 C -0.236 4.236 5 C 0.055 3.945 6 O -0.231 6.231 7 C 0.008 3.992 8 C -0.163 4.163 9 C 0.290 3.710 10 O -0.485 6.485 11 N -0.351 5.351 12 C 0.165 3.835 13 H 0.016 0.984 14 C -0.193 4.193 15 C -0.585 4.585 16 H 0.093 0.907 17 C -0.188 4.188 18 N -0.556 5.556 19 Si 0.798 3.202 20 H -0.204 1.204 21 H -0.183 1.183 22 H -0.210 1.210 23 C -0.127 4.127 24 C -0.159 4.159 25 C -0.106 4.106 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.154 0.846 30 H 0.139 0.861 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.244 0.756 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.031 0.969 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.782 -16.722 -1.098 25.171 hybrid contribution 1.226 0.788 0.310 1.490 sum -17.556 -15.933 -0.788 23.721 Atomic orbital electron populations 1.20760 0.88962 1.03591 1.02960 1.20195 0.97767 0.92582 1.02175 1.21078 0.92816 0.99009 0.98685 1.21451 0.96383 0.97176 1.08568 1.19104 0.82200 0.94506 0.98685 1.85916 1.16698 1.31577 1.88872 1.22260 0.91809 0.83191 1.01900 1.21380 0.92676 0.94344 1.07896 1.20932 0.82943 0.91392 0.75685 1.90655 1.65602 1.39244 1.52971 1.46244 1.05788 1.10872 1.72195 1.18367 0.91355 0.80459 0.93301 0.98355 1.21903 0.97533 1.02433 0.97451 1.21554 0.99408 0.96088 1.41416 0.90676 1.25831 1.02764 0.94663 0.95515 1.70057 1.38476 1.00221 1.46874 0.85321 0.78322 0.78446 0.78099 1.20403 1.18284 1.21021 1.19618 0.94106 0.93712 1.05229 1.20630 0.99853 0.92600 1.02791 1.21090 0.91940 0.98920 0.98657 0.90553 0.90299 0.91170 0.84575 0.86058 0.92400 0.92266 0.85568 0.85756 0.75625 0.91533 0.93931 0.96872 0.92553 0.90869 0.89765 0.91928 0.82841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.01 71.24 0.71 -0.51 16 2 C -0.13 -2.30 5.88 -19.85 -0.12 -2.42 16 3 C -0.10 -2.10 9.69 22.25 0.22 -1.88 16 4 C -0.22 -5.59 9.04 22.36 0.20 -5.39 16 5 C 0.10 2.61 6.66 22.51 0.15 2.76 16 6 O -0.32 -8.49 9.18 -92.43 -0.85 -9.34 16 7 C 0.08 2.38 4.03 71.98 0.29 2.67 16 8 C -0.12 -3.26 6.07 29.85 0.18 -3.08 16 9 C 0.50 19.35 7.79 87.66 0.68 20.04 16 10 O -0.60 -28.83 15.65 -3.04 -0.05 -28.88 16 11 N -0.70 -28.33 5.07 -446.09 -2.26 -30.59 16 12 C 0.27 13.85 2.56 44.24 0.11 13.96 16 13 H 0.00 -0.09 7.58 -2.38 -0.02 -0.11 16 14 C -0.13 -6.79 9.26 71.98 0.67 -6.13 16 15 C -0.55 -28.66 8.73 25.60 0.22 -28.44 16 16 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 17 C 0.01 0.66 5.30 84.66 0.45 1.10 16 18 N -0.92 -52.63 11.32 21.45 0.24 -52.39 16 19 Si 0.97 41.75 29.54 68.60 2.03 43.77 16 20 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 C -0.13 -2.72 5.89 -19.77 -0.12 -2.83 16 24 C -0.10 -1.72 9.79 71.23 0.70 -1.02 16 25 C -0.09 -1.57 9.35 22.25 0.21 -1.36 16 26 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 28 H 0.07 0.73 8.08 -2.39 -0.02 0.72 16 29 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.12 3.27 6.30 -2.91 -0.02 3.25 16 31 H 0.06 1.76 7.62 -2.39 -0.02 1.75 16 32 H 0.06 1.78 7.62 -2.39 -0.02 1.77 16 33 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.41 13.50 8.54 -92.71 -0.79 12.71 16 36 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 37 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 39 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 1.03 8.09 -2.38 -0.02 1.01 16 42 H 0.06 1.16 7.53 -2.39 -0.02 1.14 16 43 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -68.27 358.67 3.88 -64.39 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.21 Total: 25.55 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 4.56 Total: -12.52 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -2.02 Total: -82.98 kcal Atomic # 8 Polarization: -37.32 SS G_CDS: -0.90 Total: -38.22 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -68.27 3.88 -64.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194711850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.554 kcal (2) G-P(sol) polarization free energy of solvation -68.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds