Wall clock time and date at job start Tue Mar 31 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38286 * 119.96883 * 2 1 4 4 C 1.38240 * 120.10909 * 180.02562 * 3 2 1 5 5 C 1.38167 * 120.05811 * 359.66951 * 4 3 2 6 6 C 1.38716 * 119.93937 * 0.62110 * 5 4 3 7 7 O 1.35901 * 120.05525 * 179.67580 * 6 5 4 8 8 C 1.42903 * 116.99929 * 359.72781 * 7 6 5 9 9 C 1.52996 * 109.46866 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47006 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99866 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00101 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99874 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47391 * 325.00213 * 13 12 10 15 15 C 1.53000 * 109.46840 * 85.00543 * 13 12 10 16 16 C 1.50699 * 109.47060 * 205.00285 * 13 12 10 17 17 H 1.07999 * 120.00019 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00129 * 180.02562 * 16 13 12 19 19 N 1.31513 * 119.99969 * 180.02562 * 18 16 13 20 20 Si 1.86797 * 119.99840 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.47167 * 89.99961 * 20 18 16 22 22 H 1.48500 * 109.47028 * 210.00109 * 20 18 16 23 23 H 1.48497 * 109.47377 * 330.00144 * 20 18 16 24 24 C 1.38120 * 119.97044 * 180.02562 * 2 1 3 25 25 C 1.50696 * 120.02928 * 0.02562 * 24 2 1 26 26 H 1.09003 * 109.46792 * 269.98007 * 1 2 3 27 27 H 1.08997 * 109.47160 * 29.98191 * 1 2 3 28 28 H 1.09000 * 109.47315 * 149.98276 * 1 2 3 29 29 H 1.08003 * 119.94897 * 359.97438 * 3 2 1 30 30 H 1.08005 * 119.97340 * 179.97438 * 4 3 2 31 31 H 1.08001 * 120.03377 * 180.30337 * 5 4 3 32 32 H 1.09002 * 109.46777 * 60.00092 * 8 7 6 33 33 H 1.08997 * 109.47391 * 300.00452 * 8 7 6 34 34 H 1.09002 * 109.47281 * 60.00481 * 9 8 7 35 35 H 1.09003 * 109.47162 * 299.99833 * 9 8 7 36 36 H 0.97002 * 119.99716 * 0.02562 * 12 10 9 37 37 H 1.09001 * 109.47194 * 299.99493 * 15 13 12 38 38 H 1.08992 * 109.47399 * 59.99666 * 15 13 12 39 39 H 1.09004 * 109.46724 * 180.02562 * 15 13 12 40 40 H 0.96999 * 119.99716 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.46939 * 269.97221 * 25 24 2 42 42 H 1.08997 * 109.47160 * 29.97523 * 25 24 2 43 43 H 1.09005 * 109.46854 * 149.97912 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2014 -0.0005 5 6 4.2752 0.0072 0.0058 6 6 3.5846 -1.1958 -0.0003 7 8 4.2658 -2.3717 -0.0007 8 6 5.6928 -2.2948 -0.0007 9 6 6.2796 -3.7077 -0.0006 10 6 7.7845 -3.6267 0.0001 11 8 8.3334 -2.5453 -0.0001 12 7 8.5202 -4.7559 0.0008 13 6 9.9831 -4.6771 0.0009 14 1 10.3006 -3.8173 -0.5891 15 6 10.4854 -4.5233 1.4379 16 6 10.5540 -5.9362 -0.5988 17 1 9.8933 -6.7169 -0.9457 18 6 11.9199 -6.0915 -0.7047 19 7 12.4181 -7.1902 -1.2285 20 14 13.0627 -4.7409 -0.1053 21 1 13.3968 -4.9728 1.3229 22 1 14.3086 -4.7520 -0.9133 23 1 12.3912 -3.4243 -0.2491 24 6 2.1970 -1.1965 -0.0005 25 6 1.4436 -2.5016 -0.0017 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3634 -0.8898 -0.5141 29 1 1.6565 2.1325 -0.0004 30 1 4.1175 2.1383 -0.0010 31 1 5.3552 0.0103 0.0104 32 1 6.0279 -1.7625 0.8895 33 1 6.0279 -1.7618 -0.8904 34 1 5.9445 -4.2405 -0.8905 35 1 5.9445 -4.2403 0.8895 36 1 8.0811 -5.6209 0.0006 37 1 10.0725 -3.6126 1.8716 38 1 10.1679 -5.3830 2.0277 39 1 11.5738 -4.4642 1.4378 40 1 13.3791 -7.2992 -1.3033 41 1 1.2619 -2.8171 1.0257 42 1 0.4912 -2.3708 -0.5154 43 1 2.0327 -3.2608 -0.5162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194714069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:54 Heat of formation + Delta-G solvation = -63.412235 kcal Electronic energy + Delta-G solvation = -22402.579290 eV Core-core repulsion = 19026.673569 eV Total energy + Delta-G solvation = -3375.905721 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.47594 -39.22263 -37.83241 -35.12851 -33.54988 -32.60952 -32.24641 -30.92698 -29.60013 -27.57086 -26.57805 -25.26379 -24.42811 -21.87441 -21.35167 -20.42236 -19.64478 -18.06753 -17.00549 -16.44561 -16.38471 -15.99146 -15.67012 -15.43596 -14.79257 -14.38692 -14.25978 -14.02126 -13.60895 -13.20911 -13.11624 -12.99554 -12.94971 -12.67365 -12.49525 -12.24052 -12.13929 -11.85054 -11.69983 -11.64053 -11.41996 -11.26168 -10.85103 -10.79531 -10.73357 -10.22422 -9.76151 -9.27456 -9.26592 -8.79531 -8.78472 -8.24147 -8.21493 -6.23991 -4.26889 1.14746 1.30307 2.92480 3.11611 3.21149 3.33208 3.37272 3.56820 4.07251 4.28789 4.58953 4.61947 4.78741 4.84278 4.96843 4.97989 5.05991 5.10787 5.19214 5.27481 5.27884 5.46947 5.51158 5.54664 5.57178 5.66454 5.72556 5.75221 5.80433 6.08609 6.24421 6.27091 6.31906 6.33495 6.42560 6.51847 6.67089 6.80899 7.13752 7.22533 7.32182 7.47023 8.08568 8.46514 8.71171 8.84251 9.36471 10.88132 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038765 B = 0.002597 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.132862 B =10778.864001 C =11270.131755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.055 4.055 3 C -0.159 4.159 4 C -0.082 4.082 5 C -0.210 4.210 6 C 0.138 3.862 7 O -0.315 6.315 8 C 0.077 3.923 9 C -0.141 4.141 10 C 0.509 3.491 11 O -0.559 6.559 12 N -0.698 5.698 13 C 0.236 3.764 14 H 0.049 0.951 15 C -0.161 4.161 16 C -0.536 4.536 17 H 0.081 0.919 18 C 0.078 3.922 19 N -0.892 5.892 20 Si 0.886 3.114 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.262 1.262 24 C -0.122 4.122 25 C -0.107 4.107 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.397 0.603 37 H 0.035 0.965 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.268 0.732 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.456 12.247 3.544 25.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.055 4.055 3 C -0.178 4.178 4 C -0.100 4.100 5 C -0.229 4.229 6 C 0.093 3.907 7 O -0.228 6.228 8 C 0.001 3.999 9 C -0.181 4.181 10 C 0.293 3.707 11 O -0.439 6.439 12 N -0.346 5.346 13 C 0.133 3.867 14 H 0.067 0.933 15 C -0.220 4.220 16 C -0.574 4.574 17 H 0.099 0.901 18 C -0.126 4.126 19 N -0.528 5.528 20 Si 0.716 3.284 21 H -0.203 1.203 22 H -0.221 1.221 23 H -0.187 1.187 24 C -0.122 4.122 25 C -0.163 4.163 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.139 0.861 30 H 0.141 0.859 31 H 0.149 0.851 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.231 0.769 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.928 12.680 3.482 25.568 hybrid contribution 0.906 0.336 0.345 1.026 sum -21.022 13.015 3.827 25.020 Atomic orbital electron populations 1.20858 0.90987 1.02944 1.02463 1.19555 0.95864 0.91883 0.98221 1.20886 0.94139 0.97344 1.05392 1.20913 0.94116 0.97447 0.97557 1.21363 1.00764 0.92199 1.08524 1.18776 0.91106 0.84780 0.96059 1.85961 1.20485 1.28087 1.88315 1.22464 0.76805 0.97614 1.02985 1.21492 0.93459 0.97436 1.05694 1.20139 0.88393 0.85048 0.77082 1.90668 1.73721 1.28155 1.51377 1.46170 1.08807 1.07541 1.72057 1.19125 0.75614 0.99032 0.92974 0.93336 1.22452 1.00013 0.99819 0.99668 1.21033 0.92772 1.01945 1.41658 0.90141 1.24839 0.97935 0.95497 0.94314 1.69866 1.13070 1.25945 1.43953 0.86866 0.80111 0.83237 0.78217 1.20284 1.22118 1.18684 1.19067 0.90297 0.95977 1.06903 1.20664 0.99436 0.94000 1.02236 0.90995 0.91516 0.90961 0.86150 0.85881 0.85054 0.91129 0.91045 0.88010 0.88139 0.76910 0.94559 0.92754 0.93406 0.92242 0.91476 0.91496 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 9.60 36.01 0.35 -0.44 16 2 C -0.06 -0.54 5.88 -104.64 -0.62 -1.16 16 3 C -0.16 -1.54 9.70 -39.56 -0.38 -1.92 16 4 C -0.08 -0.86 10.04 -39.61 -0.40 -1.26 16 5 C -0.21 -2.53 9.04 -39.43 -0.36 -2.89 16 6 C 0.14 1.76 6.66 -39.21 -0.26 1.50 16 7 O -0.31 -4.11 9.18 -19.43 -0.18 -4.29 16 8 C 0.08 1.01 4.03 37.16 0.15 1.16 16 9 C -0.14 -1.83 6.07 -27.88 -0.17 -2.00 16 10 C 0.51 9.11 7.79 -10.98 -0.09 9.02 16 11 O -0.56 -12.02 15.64 5.56 0.09 -11.93 16 12 N -0.70 -13.39 5.07 -54.93 -0.28 -13.67 16 13 C 0.24 5.55 2.15 -69.08 -0.15 5.40 16 14 H 0.05 1.26 6.64 -51.93 -0.34 0.92 16 15 C -0.16 -3.57 8.96 37.16 0.33 -3.23 16 16 C -0.54 -14.34 9.31 -34.44 -0.32 -14.66 16 17 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 18 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 19 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 20 Si 0.89 21.64 24.37 -169.99 -4.14 17.50 16 21 H -0.28 -6.52 6.87 56.52 0.39 -6.14 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.26 -6.36 6.53 56.52 0.37 -5.99 16 24 C -0.12 -1.37 5.89 -104.48 -0.62 -1.98 16 25 C -0.11 -0.98 9.38 36.00 0.34 -0.64 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 28 H 0.07 0.44 5.94 -51.93 -0.31 0.13 16 29 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 30 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 31 H 0.13 1.56 6.30 -52.49 -0.33 1.23 16 32 H 0.07 0.96 7.61 -51.93 -0.40 0.56 16 33 H 0.07 0.98 7.63 -51.93 -0.40 0.59 16 34 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.40 6.62 8.54 -40.82 -0.35 6.27 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.49 5.94 -51.93 -0.31 0.18 16 43 H 0.07 0.70 7.53 -51.93 -0.39 0.31 16 LS Contribution 347.44 15.07 5.24 5.24 Total: -1.00 -31.68 347.44 -7.18 -38.87 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -6.40 Total: 4.77 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -2.28 Total: -11.01 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.50 Total: -39.15 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.09 Total: -16.22 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.14 Total: 17.50 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.68 -7.18 -38.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194714069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.544 kcal (2) G-P(sol) polarization free energy of solvation -31.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds