Wall clock time and date at job start Tue Mar 31 2020 06:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38286 * 119.96883 * 2 1 4 4 C 1.38240 * 120.10909 * 180.02562 * 3 2 1 5 5 C 1.38167 * 120.05811 * 359.66951 * 4 3 2 6 6 C 1.38716 * 119.93937 * 0.62110 * 5 4 3 7 7 O 1.35901 * 120.05525 * 179.67580 * 6 5 4 8 8 C 1.42903 * 116.99929 * 359.72781 * 7 6 5 9 9 C 1.52996 * 109.46866 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47006 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99866 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00101 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99874 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47391 * 325.00213 * 13 12 10 15 15 C 1.53000 * 109.46840 * 85.00543 * 13 12 10 16 16 C 1.50699 * 109.47060 * 205.00285 * 13 12 10 17 17 H 1.07999 * 120.00019 * 0.02562 * 16 13 12 18 18 C 1.37877 * 120.00129 * 180.02562 * 16 13 12 19 19 N 1.31513 * 119.99969 * 180.02562 * 18 16 13 20 20 Si 1.86797 * 119.99840 * 359.97438 * 18 16 13 21 21 H 1.48497 * 109.47167 * 89.99961 * 20 18 16 22 22 H 1.48500 * 109.47028 * 210.00109 * 20 18 16 23 23 H 1.48497 * 109.47377 * 330.00144 * 20 18 16 24 24 C 1.38120 * 119.97044 * 180.02562 * 2 1 3 25 25 C 1.50696 * 120.02928 * 0.02562 * 24 2 1 26 26 H 1.09003 * 109.46792 * 269.98007 * 1 2 3 27 27 H 1.08997 * 109.47160 * 29.98191 * 1 2 3 28 28 H 1.09000 * 109.47315 * 149.98276 * 1 2 3 29 29 H 1.08003 * 119.94897 * 359.97438 * 3 2 1 30 30 H 1.08005 * 119.97340 * 179.97438 * 4 3 2 31 31 H 1.08001 * 120.03377 * 180.30337 * 5 4 3 32 32 H 1.09002 * 109.46777 * 60.00092 * 8 7 6 33 33 H 1.08997 * 109.47391 * 300.00452 * 8 7 6 34 34 H 1.09002 * 109.47281 * 60.00481 * 9 8 7 35 35 H 1.09003 * 109.47162 * 299.99833 * 9 8 7 36 36 H 0.97002 * 119.99716 * 0.02562 * 12 10 9 37 37 H 1.09001 * 109.47194 * 299.99493 * 15 13 12 38 38 H 1.08992 * 109.47399 * 59.99666 * 15 13 12 39 39 H 1.09004 * 109.46724 * 180.02562 * 15 13 12 40 40 H 0.96999 * 119.99716 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.46939 * 269.97221 * 25 24 2 42 42 H 1.08997 * 109.47160 * 29.97523 * 25 24 2 43 43 H 1.09005 * 109.46854 * 149.97912 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5802 1.2014 -0.0005 5 6 4.2752 0.0072 0.0058 6 6 3.5846 -1.1958 -0.0003 7 8 4.2658 -2.3717 -0.0007 8 6 5.6928 -2.2948 -0.0007 9 6 6.2796 -3.7077 -0.0006 10 6 7.7845 -3.6267 0.0001 11 8 8.3334 -2.5453 -0.0001 12 7 8.5202 -4.7559 0.0008 13 6 9.9831 -4.6771 0.0009 14 1 10.3006 -3.8173 -0.5891 15 6 10.4854 -4.5233 1.4379 16 6 10.5540 -5.9362 -0.5988 17 1 9.8933 -6.7169 -0.9457 18 6 11.9199 -6.0915 -0.7047 19 7 12.4181 -7.1902 -1.2285 20 14 13.0627 -4.7409 -0.1053 21 1 13.3968 -4.9728 1.3229 22 1 14.3086 -4.7520 -0.9133 23 1 12.3912 -3.4243 -0.2491 24 6 2.1970 -1.1965 -0.0005 25 6 1.4436 -2.5016 -0.0017 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3634 -0.8898 -0.5141 29 1 1.6565 2.1325 -0.0004 30 1 4.1175 2.1383 -0.0010 31 1 5.3552 0.0103 0.0104 32 1 6.0279 -1.7625 0.8895 33 1 6.0279 -1.7618 -0.8904 34 1 5.9445 -4.2405 -0.8905 35 1 5.9445 -4.2403 0.8895 36 1 8.0811 -5.6209 0.0006 37 1 10.0725 -3.6126 1.8716 38 1 10.1679 -5.3830 2.0277 39 1 11.5738 -4.4642 1.4378 40 1 13.3791 -7.2992 -1.3033 41 1 1.2619 -2.8171 1.0257 42 1 0.4912 -2.3708 -0.5154 43 1 2.0327 -3.2608 -0.5162 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194714069.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:54 Heat of formation + Delta-G solvation = -83.571065 kcal Electronic energy + Delta-G solvation = -22403.453442 eV Core-core repulsion = 19026.673569 eV Total energy + Delta-G solvation = -3376.779874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.38322 -40.66905 -38.74901 -36.90828 -34.44054 -34.29446 -33.49408 -32.04964 -31.07939 -28.28102 -27.34830 -27.22456 -25.61309 -22.93761 -22.66516 -21.49927 -21.12880 -19.30848 -18.59235 -17.60068 -17.48496 -17.40668 -17.06664 -16.46970 -16.03343 -15.93961 -15.20640 -15.03301 -14.87667 -14.66450 -14.43599 -14.13402 -13.95149 -13.86476 -13.61313 -13.44499 -13.35281 -13.13442 -12.84938 -12.76202 -12.51025 -12.49269 -12.17572 -12.15690 -11.71272 -11.64090 -11.58708 -11.29672 -10.90382 -10.84142 -9.92197 -9.55440 -9.08099 -8.39365 -6.45377 0.34981 0.47647 1.26433 1.34781 1.43884 1.67613 1.84292 2.24925 2.72262 2.76408 2.96846 3.63387 3.85159 3.88883 3.92068 4.06084 4.13909 4.25567 4.28790 4.41371 4.46154 4.49428 4.57311 4.67207 4.71579 4.73828 4.76445 4.81155 4.88537 4.91321 4.98376 5.00431 5.18187 5.30770 5.40079 5.41273 5.44110 5.52993 5.61035 5.67477 5.90099 6.11231 6.40201 6.56558 6.81549 7.17022 7.38852 8.75802 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038765 B = 0.002597 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.132862 B =10778.864001 C =11270.131755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.059 4.059 3 C -0.160 4.160 4 C -0.091 4.091 5 C -0.229 4.229 6 C 0.111 3.889 7 O -0.318 6.318 8 C 0.083 3.917 9 C -0.125 4.125 10 C 0.509 3.491 11 O -0.596 6.596 12 N -0.698 5.698 13 C 0.240 3.760 14 H 0.023 0.977 15 C -0.156 4.156 16 C -0.533 4.533 17 H 0.058 0.942 18 C 0.028 3.972 19 N -0.933 5.933 20 Si 0.939 3.061 21 H -0.259 1.259 22 H -0.293 1.293 23 H -0.263 1.263 24 C -0.135 4.135 25 C -0.105 4.105 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.146 0.854 30 H 0.140 0.860 31 H 0.123 0.877 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.410 0.590 37 H 0.046 0.954 38 H 0.066 0.934 39 H 0.040 0.960 40 H 0.270 0.730 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.620 13.386 4.443 28.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.059 4.059 3 C -0.178 4.178 4 C -0.109 4.109 5 C -0.247 4.247 6 C 0.065 3.935 7 O -0.232 6.232 8 C 0.008 3.992 9 C -0.165 4.165 10 C 0.296 3.704 11 O -0.478 6.478 12 N -0.347 5.347 13 C 0.135 3.865 14 H 0.041 0.959 15 C -0.214 4.214 16 C -0.572 4.572 17 H 0.077 0.923 18 C -0.172 4.172 19 N -0.572 5.572 20 Si 0.767 3.233 21 H -0.185 1.185 22 H -0.220 1.220 23 H -0.187 1.187 24 C -0.136 4.136 25 C -0.161 4.161 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.164 0.836 30 H 0.158 0.842 31 H 0.141 0.859 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.246 0.754 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.130 13.809 4.391 28.147 hybrid contribution 1.452 0.021 0.021 1.452 sum -22.678 13.830 4.413 26.927 Atomic orbital electron populations 1.20930 0.88609 1.04090 1.03471 1.19988 0.97636 0.91383 0.96921 1.21261 0.93927 0.98526 1.04119 1.21200 0.94896 0.97560 0.97235 1.21450 1.00604 0.92976 1.09699 1.19089 0.91950 0.84699 0.97715 1.85921 1.19887 1.28580 1.88765 1.22287 0.77373 0.97458 1.02130 1.21381 0.89279 0.97856 1.07976 1.20862 0.90265 0.83798 0.75430 1.90653 1.74928 1.29464 1.52759 1.45997 1.07256 1.08887 1.72541 1.18780 0.78186 0.96130 0.93361 0.95931 1.22348 0.99505 1.00939 0.98589 1.21261 0.92610 1.02410 1.40881 0.92348 1.25567 0.99607 0.97335 0.94681 1.69974 1.13584 1.27860 1.45770 0.86000 0.78181 0.80565 0.78596 1.18506 1.22024 1.18745 1.19426 0.89903 0.97475 1.06806 1.20693 0.99930 0.92769 1.02734 0.89895 0.90076 0.90168 0.83604 0.84177 0.85897 0.91889 0.92248 0.85940 0.85416 0.75365 0.93483 0.91483 0.94132 0.92036 0.90903 0.89503 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.60 71.24 0.68 -0.51 16 2 C -0.06 -1.04 5.88 -19.88 -0.12 -1.15 16 3 C -0.16 -2.76 9.70 22.28 0.22 -2.54 16 4 C -0.09 -1.81 10.04 22.25 0.22 -1.59 16 5 C -0.23 -5.55 9.04 22.37 0.20 -5.35 16 6 C 0.11 2.78 6.66 22.51 0.15 2.93 16 7 O -0.32 -8.14 9.18 -92.44 -0.85 -8.98 16 8 C 0.08 2.18 4.03 71.98 0.29 2.47 16 9 C -0.13 -3.06 6.07 29.85 0.18 -2.88 16 10 C 0.51 17.81 7.79 87.66 0.68 18.50 16 11 O -0.60 -25.59 15.64 -3.02 -0.05 -25.64 16 12 N -0.70 -26.20 5.07 -446.09 -2.26 -28.46 16 13 C 0.24 11.22 2.15 44.25 0.10 11.32 16 14 H 0.02 1.19 6.64 -2.39 -0.02 1.17 16 15 C -0.16 -6.66 8.96 71.98 0.65 -6.02 16 16 C -0.53 -28.75 9.31 25.60 0.24 -28.51 16 17 H 0.06 3.33 7.98 -2.91 -0.02 3.31 16 18 C 0.03 1.57 5.45 84.65 0.46 2.03 16 19 N -0.93 -55.66 13.96 21.45 0.30 -55.36 16 20 Si 0.94 44.52 24.37 68.60 1.67 46.20 16 21 H -0.26 -11.53 6.87 99.48 0.68 -10.85 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 23 H -0.26 -12.39 6.53 99.48 0.65 -11.74 16 24 C -0.14 -2.87 5.89 -19.77 -0.12 -2.99 16 25 C -0.10 -1.75 9.38 71.23 0.67 -1.08 16 26 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 28 H 0.08 0.71 5.94 -2.39 -0.01 0.70 16 29 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 30 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 31 H 0.12 3.06 6.30 -2.91 -0.02 3.04 16 32 H 0.06 1.72 7.61 -2.39 -0.02 1.70 16 33 H 0.06 1.67 7.63 -2.39 -0.02 1.65 16 34 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.41 13.20 8.54 -92.71 -0.79 12.41 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.04 1.78 3.27 -2.39 -0.01 1.77 16 40 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 41 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 42 H 0.09 1.06 5.94 -2.39 -0.01 1.04 16 43 H 0.06 1.13 7.53 -2.38 -0.02 1.11 16 Total: -1.00 -68.70 347.44 3.47 -65.23 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.15 Total: 22.39 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 4.51 Total: -15.38 kcal Atomic # 7 Polarization: -81.86 SS G_CDS: -1.96 Total: -83.82 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -0.90 Total: -34.63 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.67 Total: 46.20 kcal Total: -68.70 3.47 -65.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194714069.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.337 kcal (2) G-P(sol) polarization free energy of solvation -68.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds