Wall clock time and date at job start Tue Mar 31 2020 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38279 * 119.93129 * 2 1 4 4 C 1.38112 * 120.07227 * 180.27773 * 3 2 1 5 5 C 1.38880 * 119.92591 * 359.46855 * 4 3 2 6 6 N 1.39921 * 120.06637 * 180.29734 * 5 4 3 7 7 C 1.46504 * 119.99709 * 247.88943 * 6 5 4 8 8 C 1.50697 * 109.46906 * 90.00866 * 7 6 5 9 9 H 1.08004 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00391 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99694 * 0.02562 * 10 8 7 13 13 H 1.48507 * 109.47341 * 89.99663 * 12 10 8 14 14 H 1.48500 * 109.47361 * 209.99962 * 12 10 8 15 15 H 1.48503 * 109.47252 * 329.99932 * 12 10 8 16 16 C 1.34777 * 120.00051 * 67.90141 * 6 5 4 17 17 O 1.21286 * 120.00048 * 4.72389 * 16 6 5 18 18 C 1.50700 * 119.99602 * 184.73635 * 16 6 5 19 19 O 1.42903 * 109.46769 * 179.97438 * 18 16 6 20 20 C 1.42906 * 113.99835 * 179.97438 * 19 18 16 21 21 C 1.53004 * 109.46620 * 149.99498 * 20 19 18 22 22 C 1.52991 * 109.47095 * 269.99645 * 20 19 18 23 23 C 1.38874 * 119.85729 * 0.27850 * 5 4 3 24 24 C 1.38114 * 119.93006 * 359.97438 * 23 5 4 25 25 H 1.08997 * 109.47146 * 270.23432 * 1 2 3 26 26 H 1.09000 * 109.47057 * 30.22851 * 1 2 3 27 27 H 1.08997 * 109.47241 * 150.23012 * 1 2 3 28 28 H 1.08000 * 119.96745 * 0.04534 * 3 2 1 29 29 H 1.07999 * 120.04037 * 179.73762 * 4 3 2 30 30 H 1.08998 * 109.47136 * 210.00180 * 7 6 5 31 31 H 1.08997 * 109.47384 * 330.00615 * 7 6 5 32 32 H 0.96997 * 119.99949 * 179.97438 * 11 10 8 33 33 H 1.09006 * 109.46923 * 299.99072 * 18 16 6 34 34 H 1.08999 * 109.47466 * 59.99499 * 18 16 6 35 35 H 1.08997 * 109.46884 * 30.00293 * 20 19 18 36 36 H 1.09004 * 109.46816 * 60.00380 * 21 20 19 37 37 H 1.09006 * 109.46760 * 179.97438 * 21 20 19 38 38 H 1.08995 * 109.47640 * 300.00119 * 21 20 19 39 39 H 1.08998 * 109.47190 * 60.00623 * 22 20 19 40 40 H 1.09006 * 109.47118 * 180.02562 * 22 20 19 41 41 H 1.09004 * 109.47478 * 300.00316 * 22 20 19 42 42 H 1.08001 * 120.03091 * 180.02562 * 23 5 4 43 43 H 1.08000 * 119.96158 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0058 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0001 0.0000 7 6 6.4059 -0.4826 -1.1732 8 6 6.6575 0.6660 -2.1157 9 1 6.3062 1.6564 -1.8661 10 6 7.3361 0.4528 -3.2969 11 7 7.5552 1.4551 -4.1196 12 14 7.9430 -1.2602 -3.7291 13 1 6.8917 -1.9800 -4.4920 14 1 9.1715 -1.1559 -4.5569 15 1 8.2483 -2.0065 -2.4821 16 6 6.3466 0.4437 1.0798 17 8 5.7430 0.7622 2.0823 18 6 7.8498 0.5442 1.0412 19 8 8.3265 1.0368 2.2951 20 6 9.7476 1.1699 2.3649 21 6 10.1065 2.3132 3.3163 22 6 10.3572 -0.1345 2.8822 23 6 3.5780 -1.2019 0.0048 24 6 2.1968 -1.1984 0.0053 25 1 -0.3633 0.0042 1.0276 26 1 -0.3633 0.8879 -0.5174 27 1 -0.3633 -0.8920 -0.5102 28 1 1.6553 2.1327 0.0007 29 1 4.1164 2.1380 -0.0101 30 1 7.3583 -0.9083 -0.8570 31 1 5.8170 -1.2467 -1.6806 32 1 8.0329 1.3051 -4.9504 33 1 8.2751 -0.4415 0.8524 34 1 8.1480 1.2271 0.2458 35 1 10.1414 1.3865 1.3719 36 1 9.7126 2.0966 4.3094 37 1 11.1905 2.4144 3.3700 38 1 9.6722 3.2425 2.9479 39 1 10.1015 -0.9489 2.2043 40 1 11.4411 -0.0328 2.9359 41 1 9.9633 -0.3510 3.8752 42 1 4.1163 -2.1382 0.0094 43 1 1.6551 -2.1327 0.0098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263799991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:38 Heat of formation + Delta-G solvation = -60.057641 kcal Electronic energy + Delta-G solvation = -23470.554125 eV Core-core repulsion = 20094.793870 eV Total energy + Delta-G solvation = -3375.760255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.01057 -38.52589 -37.50440 -35.28262 -32.89529 -32.53408 -31.57114 -30.58381 -28.20627 -27.83258 -27.09728 -25.40971 -22.92182 -22.03609 -21.41102 -21.08500 -19.02836 -17.18653 -17.01589 -16.24767 -16.19423 -15.55046 -15.04517 -14.99271 -14.53381 -14.21665 -13.95421 -13.59366 -13.49592 -13.09437 -13.05350 -12.75648 -12.46805 -12.40754 -12.15397 -12.08016 -12.04475 -11.75466 -11.61990 -11.38879 -11.26539 -11.08486 -10.82724 -10.70283 -10.54403 -10.36670 -9.73200 -9.36656 -9.19881 -8.79754 -8.53913 -8.52783 -7.65819 -6.29107 -4.31890 1.66540 1.80871 3.11408 3.14448 3.17934 3.20275 3.30769 4.10855 4.18904 4.26822 4.97353 5.01038 5.11433 5.12441 5.15663 5.25844 5.34509 5.36947 5.53562 5.55541 5.63849 5.70405 5.77131 5.79074 5.84271 5.86868 5.89574 5.94608 6.04044 6.07706 6.23682 6.28965 6.36464 6.43076 6.50361 6.67260 6.91033 6.95475 7.10836 7.32731 7.36563 7.61239 7.92809 8.28526 8.73761 8.82326 9.28702 10.83221 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010012 B = 0.006143 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.051471 B = 4556.626417 C = 6558.646568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C -0.111 4.111 4 C -0.097 4.097 5 C 0.169 3.831 6 N -0.556 5.556 7 C 0.208 3.792 8 C -0.544 4.544 9 H 0.080 0.920 10 C 0.079 3.921 11 N -0.887 5.887 12 Si 0.869 3.131 13 H -0.272 1.272 14 H -0.281 1.281 15 H -0.264 1.264 16 C 0.526 3.474 17 O -0.534 6.534 18 C 0.049 3.951 19 O -0.363 6.363 20 C 0.077 3.923 21 C -0.147 4.147 22 C -0.175 4.175 23 C -0.122 4.122 24 C -0.114 4.114 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.268 0.732 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.120 0.880 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.195 -4.158 8.528 9.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.103 4.103 3 C -0.130 4.130 4 C -0.117 4.117 5 C 0.078 3.922 6 N -0.286 5.286 7 C 0.088 3.912 8 C -0.583 4.583 9 H 0.099 0.901 10 C -0.125 4.125 11 N -0.524 5.524 12 Si 0.695 3.305 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.189 1.189 16 C 0.314 3.686 17 O -0.411 6.411 18 C -0.030 4.030 19 O -0.282 6.282 20 C 0.019 3.981 21 C -0.204 4.204 22 C -0.232 4.232 23 C -0.142 4.142 24 C -0.133 4.133 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.138 0.862 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.491 -3.889 9.032 10.144 hybrid contribution 0.722 -0.952 -0.930 1.514 sum -1.769 -4.842 8.102 9.603 Atomic orbital electron populations 1.20720 0.91555 1.02380 1.01829 1.19815 0.95743 0.93222 1.01478 1.20830 0.93544 0.97399 1.01207 1.21252 0.94070 0.97780 0.98559 1.17494 0.82940 0.92999 0.98742 1.45496 1.03411 1.63138 1.16509 1.19971 0.91692 0.96287 0.83219 1.21322 1.37771 0.95839 1.03321 0.90144 1.24848 0.95166 0.96775 0.95723 1.69880 1.40462 1.31014 1.11007 0.86959 0.79176 0.84973 0.79345 1.19729 1.20692 1.18867 1.20158 0.89272 0.76774 0.82359 1.90664 1.70217 1.48545 1.31641 1.22292 0.92212 1.00848 0.87666 1.87984 1.20687 1.86131 1.33405 1.22119 0.81468 0.95139 0.99365 1.21831 1.00871 0.97885 0.99832 1.22304 1.00599 0.98054 1.02255 1.21146 0.94251 0.97261 1.01527 1.20749 0.93384 0.97324 1.01805 0.91624 0.91802 0.91888 0.86174 0.86018 0.94547 0.94729 0.92227 0.90776 0.88357 0.91755 0.91922 0.91466 0.91863 0.92459 0.91805 0.91887 0.86154 0.86233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 2 C -0.10 -1.52 5.88 -104.59 -0.62 -2.14 16 3 C -0.11 -1.83 9.69 -39.61 -0.38 -2.21 16 4 C -0.10 -1.91 9.55 -39.39 -0.38 -2.29 16 5 C 0.17 3.46 4.75 -83.69 -0.40 3.06 16 6 N -0.56 -11.92 2.51 -114.74 -0.29 -12.21 16 7 C 0.21 4.60 3.95 -5.19 -0.02 4.58 16 8 C -0.54 -14.12 9.71 -34.44 -0.33 -14.45 16 9 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 10 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 11 N -0.89 -25.25 13.96 55.43 0.77 -24.48 16 12 Si 0.87 19.33 27.47 -169.99 -4.67 14.66 16 13 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 15 H -0.26 -5.46 6.54 56.52 0.37 -5.09 16 16 C 0.53 11.40 7.60 -10.99 -0.08 11.32 16 17 O -0.53 -12.90 16.26 -14.36 -0.23 -13.13 16 18 C 0.05 0.93 4.89 36.01 0.18 1.10 16 19 O -0.36 -6.67 9.52 -55.14 -0.52 -7.20 16 20 C 0.08 1.09 3.34 -26.73 -0.09 1.00 16 21 C -0.15 -1.77 9.56 37.16 0.36 -1.41 16 22 C -0.17 -2.10 9.53 37.15 0.35 -1.74 16 23 C -0.12 -2.17 9.69 -39.39 -0.38 -2.55 16 24 C -0.11 -1.74 9.69 -39.61 -0.38 -2.12 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 27 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 28 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 30 H 0.04 0.76 5.53 -51.93 -0.29 0.47 16 31 H 0.03 0.75 7.29 -51.93 -0.38 0.37 16 32 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 33 H 0.07 1.26 6.99 -51.93 -0.36 0.89 16 34 H 0.10 1.91 7.86 -51.93 -0.41 1.50 16 35 H 0.06 0.87 7.79 -51.93 -0.40 0.47 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.70 7.87 -51.93 -0.41 0.29 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 43 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -31.20 360.72 -8.33 -39.53 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.91 Total: 4.09 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -1.92 Total: -6.69 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.49 Total: -36.68 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.76 Total: -20.33 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.67 Total: 14.66 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.20 -8.33 -39.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263799991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.530 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds