Wall clock time and date at job start Tue Mar 31 2020 06:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38279 * 119.93129 * 2 1 4 4 C 1.38112 * 120.07227 * 180.27773 * 3 2 1 5 5 C 1.38880 * 119.92591 * 359.46855 * 4 3 2 6 6 N 1.39921 * 120.06637 * 180.29734 * 5 4 3 7 7 C 1.46504 * 119.99709 * 247.88943 * 6 5 4 8 8 C 1.50697 * 109.46906 * 90.00866 * 7 6 5 9 9 H 1.08004 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00391 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99694 * 0.02562 * 10 8 7 13 13 H 1.48507 * 109.47341 * 89.99663 * 12 10 8 14 14 H 1.48500 * 109.47361 * 209.99962 * 12 10 8 15 15 H 1.48503 * 109.47252 * 329.99932 * 12 10 8 16 16 C 1.34777 * 120.00051 * 67.90141 * 6 5 4 17 17 O 1.21286 * 120.00048 * 4.72389 * 16 6 5 18 18 C 1.50700 * 119.99602 * 184.73635 * 16 6 5 19 19 O 1.42903 * 109.46769 * 179.97438 * 18 16 6 20 20 C 1.42906 * 113.99835 * 179.97438 * 19 18 16 21 21 C 1.53004 * 109.46620 * 149.99498 * 20 19 18 22 22 C 1.52991 * 109.47095 * 269.99645 * 20 19 18 23 23 C 1.38874 * 119.85729 * 0.27850 * 5 4 3 24 24 C 1.38114 * 119.93006 * 359.97438 * 23 5 4 25 25 H 1.08997 * 109.47146 * 270.23432 * 1 2 3 26 26 H 1.09000 * 109.47057 * 30.22851 * 1 2 3 27 27 H 1.08997 * 109.47241 * 150.23012 * 1 2 3 28 28 H 1.08000 * 119.96745 * 0.04534 * 3 2 1 29 29 H 1.07999 * 120.04037 * 179.73762 * 4 3 2 30 30 H 1.08998 * 109.47136 * 210.00180 * 7 6 5 31 31 H 1.08997 * 109.47384 * 330.00615 * 7 6 5 32 32 H 0.96997 * 119.99949 * 179.97438 * 11 10 8 33 33 H 1.09006 * 109.46923 * 299.99072 * 18 16 6 34 34 H 1.08999 * 109.47466 * 59.99499 * 18 16 6 35 35 H 1.08997 * 109.46884 * 30.00293 * 20 19 18 36 36 H 1.09004 * 109.46816 * 60.00380 * 21 20 19 37 37 H 1.09006 * 109.46760 * 179.97438 * 21 20 19 38 38 H 1.08995 * 109.47640 * 300.00119 * 21 20 19 39 39 H 1.08998 * 109.47190 * 60.00623 * 22 20 19 40 40 H 1.09006 * 109.47118 * 180.02562 * 22 20 19 41 41 H 1.09004 * 109.47478 * 300.00316 * 22 20 19 42 42 H 1.08001 * 120.03091 * 180.02562 * 23 5 4 43 43 H 1.08000 * 119.96158 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0058 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0001 0.0000 7 6 6.4059 -0.4826 -1.1732 8 6 6.6575 0.6660 -2.1157 9 1 6.3062 1.6564 -1.8661 10 6 7.3361 0.4528 -3.2969 11 7 7.5552 1.4551 -4.1196 12 14 7.9430 -1.2602 -3.7291 13 1 6.8917 -1.9800 -4.4920 14 1 9.1715 -1.1559 -4.5569 15 1 8.2483 -2.0065 -2.4821 16 6 6.3466 0.4437 1.0798 17 8 5.7430 0.7622 2.0823 18 6 7.8498 0.5442 1.0412 19 8 8.3265 1.0368 2.2951 20 6 9.7476 1.1699 2.3649 21 6 10.1065 2.3132 3.3163 22 6 10.3572 -0.1345 2.8822 23 6 3.5780 -1.2019 0.0048 24 6 2.1968 -1.1984 0.0053 25 1 -0.3633 0.0042 1.0276 26 1 -0.3633 0.8879 -0.5174 27 1 -0.3633 -0.8920 -0.5102 28 1 1.6553 2.1327 0.0007 29 1 4.1164 2.1380 -0.0101 30 1 7.3583 -0.9083 -0.8570 31 1 5.8170 -1.2467 -1.6806 32 1 8.0329 1.3051 -4.9504 33 1 8.2751 -0.4415 0.8524 34 1 8.1480 1.2271 0.2458 35 1 10.1414 1.3865 1.3719 36 1 9.7126 2.0966 4.3094 37 1 11.1905 2.4144 3.3700 38 1 9.6722 3.2425 2.9479 39 1 10.1015 -0.9489 2.2043 40 1 11.4411 -0.0328 2.9359 41 1 9.9633 -0.3510 3.8752 42 1 4.1163 -2.1382 0.0094 43 1 1.6551 -2.1327 0.0098 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263799991.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:37 Heat of formation + Delta-G solvation = -77.170502 kcal Electronic energy + Delta-G solvation = -23471.296195 eV Core-core repulsion = 20094.793870 eV Total energy + Delta-G solvation = -3376.502325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.57140 -39.88779 -38.86983 -36.97445 -34.73895 -33.78977 -32.92188 -31.91273 -29.97823 -29.28121 -28.07962 -26.68857 -24.69563 -23.51510 -22.73005 -22.23735 -20.54404 -19.16123 -18.57109 -17.87426 -17.56392 -17.08636 -16.38236 -16.31032 -16.14104 -15.74501 -15.24715 -14.92250 -14.71696 -14.52407 -14.38474 -14.27826 -13.97462 -13.77503 -13.52168 -13.22047 -13.05532 -13.03754 -12.87387 -12.78938 -12.54844 -12.45725 -12.37925 -12.12188 -11.93459 -11.74090 -11.65889 -10.93086 -10.81857 -10.64375 -10.07972 -9.88273 -9.15542 -8.33401 -6.42680 0.30935 0.46250 1.38442 1.39407 1.47495 1.49179 1.80202 2.31329 2.74097 2.90886 2.99897 3.63280 3.92598 4.01690 4.03703 4.03902 4.06839 4.15364 4.27911 4.33468 4.42758 4.47580 4.51968 4.68165 4.75045 4.77414 4.80837 4.83634 4.89396 4.91701 4.92781 5.11776 5.16541 5.25877 5.32434 5.33576 5.38081 5.53563 5.65956 5.71215 6.02062 6.13199 6.20767 6.41208 6.61851 7.11476 7.24076 8.82798 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010012 B = 0.006143 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.051471 B = 4556.626417 C = 6558.646568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.095 4.095 3 C -0.117 4.117 4 C -0.129 4.129 5 C 0.125 3.875 6 N -0.555 5.555 7 C 0.216 3.784 8 C -0.545 4.545 9 H 0.028 0.972 10 C 0.023 3.977 11 N -0.939 5.939 12 Si 0.939 3.061 13 H -0.266 1.266 14 H -0.280 1.280 15 H -0.231 1.231 16 C 0.517 3.483 17 O -0.568 6.568 18 C 0.059 3.941 19 O -0.388 6.388 20 C 0.063 3.937 21 C -0.144 4.144 22 C -0.169 4.169 23 C -0.130 4.130 24 C -0.108 4.108 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.141 0.859 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.270 0.730 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.135 0.865 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 -7.194 8.931 11.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.096 4.096 3 C -0.135 4.135 4 C -0.149 4.149 5 C 0.035 3.965 6 N -0.283 5.283 7 C 0.096 3.904 8 C -0.583 4.583 9 H 0.046 0.954 10 C -0.177 4.177 11 N -0.578 5.578 12 Si 0.761 3.239 13 H -0.191 1.191 14 H -0.206 1.206 15 H -0.154 1.154 16 C 0.307 3.693 17 O -0.447 6.447 18 C -0.020 4.020 19 O -0.307 6.307 20 C 0.006 3.994 21 C -0.201 4.201 22 C -0.226 4.226 23 C -0.150 4.150 24 C -0.127 4.127 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.159 0.841 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.079 0.921 42 H 0.153 0.847 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.988 -6.929 9.451 12.094 hybrid contribution 0.764 0.127 -1.026 1.285 sum -2.224 -6.802 8.425 11.054 Atomic orbital electron populations 1.20807 0.88118 1.03968 1.03308 1.20342 0.98140 0.92266 0.98815 1.21129 0.92257 0.99492 1.00670 1.21262 0.95780 0.96724 1.01096 1.17905 0.82661 0.94392 1.01568 1.45501 1.04207 1.62672 1.15955 1.19848 0.92925 0.94806 0.82830 1.21400 1.37408 0.95013 1.04529 0.95399 1.25781 0.95129 1.01522 0.95251 1.70046 1.41935 1.33981 1.11811 0.85839 0.78486 0.79239 0.80314 1.19129 1.20580 1.15412 1.20724 0.90482 0.76099 0.82013 1.90618 1.71139 1.50076 1.32838 1.22154 0.90413 1.01693 0.87771 1.87968 1.23499 1.86386 1.32856 1.22510 0.79392 0.97235 1.00294 1.21861 1.02792 0.96475 0.99017 1.22267 1.02122 0.96470 1.01785 1.21400 0.95581 0.96595 1.01404 1.21242 0.92511 0.99159 0.99756 0.89994 0.90816 0.89818 0.84127 0.89016 0.92363 0.93502 0.92084 0.88376 0.89740 0.91501 0.92111 0.88345 0.93099 0.92691 0.89053 0.92150 0.84704 0.82264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 10.01 71.24 0.71 -1.19 16 2 C -0.10 -2.62 5.88 -19.85 -0.12 -2.74 16 3 C -0.12 -3.85 9.69 22.25 0.22 -3.64 16 4 C -0.13 -5.38 9.55 22.39 0.21 -5.17 16 5 C 0.12 5.26 4.75 38.16 0.18 5.44 16 6 N -0.55 -24.51 2.51 -635.30 -1.59 -26.11 16 7 C 0.22 9.52 3.95 85.63 0.34 9.86 16 8 C -0.55 -29.36 9.71 25.60 0.25 -29.11 16 9 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 10 C 0.02 1.22 5.47 84.65 0.46 1.68 16 11 N -0.94 -55.37 13.96 21.45 0.30 -55.07 16 12 Si 0.94 38.97 27.47 68.60 1.88 40.85 16 13 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 14 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 15 H -0.23 -8.33 6.54 99.48 0.65 -7.68 16 16 C 0.52 23.33 7.60 87.66 0.67 23.99 16 17 O -0.57 -28.74 16.26 15.99 0.26 -28.48 16 18 C 0.06 2.28 4.89 71.24 0.35 2.62 16 19 O -0.39 -14.53 9.52 -129.94 -1.24 -15.77 16 20 C 0.06 1.73 3.34 30.59 0.10 1.83 16 21 C -0.14 -3.37 9.56 71.98 0.69 -2.68 16 22 C -0.17 -3.75 9.53 71.98 0.69 -3.06 16 23 C -0.13 -4.49 9.69 22.39 0.22 -4.27 16 24 C -0.11 -3.01 9.69 22.25 0.22 -2.79 16 25 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 27 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 28 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 29 H 0.09 4.20 8.06 -2.91 -0.02 4.18 16 30 H 0.06 2.32 5.53 -2.39 -0.01 2.30 16 31 H 0.05 1.97 7.29 -2.39 -0.02 1.95 16 32 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 33 H 0.10 3.24 6.99 -2.38 -0.02 3.22 16 34 H 0.08 3.46 7.86 -2.39 -0.02 3.44 16 35 H 0.07 1.79 7.79 -2.39 -0.02 1.77 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 1.23 7.87 -2.39 -0.02 1.22 16 40 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 43 H 0.16 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -72.45 360.72 5.71 -66.73 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.92 Total: 27.07 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 5.18 Total: -9.22 kcal Atomic # 7 Polarization: -79.88 SS G_CDS: -1.29 Total: -81.17 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -0.98 Total: -44.25 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 1.88 Total: 40.85 kcal Total: -72.45 5.71 -66.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263799991.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.439 kcal (2) G-P(sol) polarization free energy of solvation -72.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds