Wall clock time and date at job start Tue Mar 31 2020 06:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42893 * 114.00007 * 2 1 4 4 C 1.53005 * 109.47137 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47122 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46688 * 179.97438 * 5 4 3 7 7 O 1.21286 * 120.00350 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99602 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00240 * 4.74832 * 8 6 5 10 10 C 1.50697 * 109.46906 * 269.99669 * 9 8 6 11 11 H 1.08004 * 120.00315 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00353 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00391 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99694 * 0.02562 * 12 10 9 15 15 H 1.48507 * 109.47341 * 89.99663 * 14 12 10 16 16 H 1.48500 * 109.47361 * 209.99962 * 14 12 10 17 17 H 1.48503 * 109.47252 * 329.99932 * 14 12 10 18 18 C 1.39921 * 120.00051 * 184.73635 * 8 6 5 19 19 C 1.38880 * 120.06637 * 67.90141 * 18 8 6 20 20 C 1.38112 * 119.92591 * 180.29734 * 19 18 8 21 21 C 1.38279 * 120.07227 * 359.46855 * 20 19 18 22 22 C 1.50699 * 119.93129 * 180.27773 * 21 20 19 23 23 C 1.38280 * 120.14278 * 0.50982 * 21 20 19 24 24 C 1.38114 * 120.06964 * 359.76678 * 23 21 20 25 25 H 1.08999 * 109.47775 * 59.99513 * 1 2 3 26 26 H 1.09002 * 109.47662 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46992 * 299.99462 * 1 2 3 28 28 H 1.08998 * 109.47059 * 60.00283 * 3 2 1 29 29 H 1.08999 * 109.47299 * 300.00247 * 3 2 1 30 30 H 1.08993 * 109.46777 * 60.00267 * 4 3 2 31 31 H 1.08999 * 109.46980 * 300.00139 * 4 3 2 32 32 H 1.09006 * 109.46987 * 60.00263 * 5 4 3 33 33 H 1.08999 * 109.47271 * 299.99917 * 5 4 3 34 34 H 1.08998 * 109.47136 * 29.98982 * 9 8 6 35 35 H 1.08997 * 109.47384 * 149.99417 * 9 8 6 36 36 H 0.96997 * 119.99949 * 179.97438 * 13 12 10 37 37 H 1.07999 * 120.03317 * 0.02829 * 19 18 8 38 38 H 1.08000 * 119.95987 * 179.70093 * 20 19 18 39 39 H 1.08997 * 109.47146 * 270.23432 * 22 21 20 40 40 H 1.09004 * 109.47265 * 30.23327 * 22 21 20 41 41 H 1.08997 * 109.47241 * 150.23012 * 22 21 20 42 42 H 1.08000 * 119.96877 * 179.74213 * 23 21 20 43 43 H 1.08001 * 120.04195 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6601 2.4632 0.0000 7 8 6.1816 1.3682 -0.0009 8 7 6.4240 3.5736 0.0000 9 6 5.7976 4.8938 0.1050 10 6 5.4860 5.4131 -1.2749 11 1 5.7305 4.8194 -2.1433 12 6 4.8888 6.6462 -1.4289 13 7 4.6173 7.0996 -2.6332 14 14 4.4665 7.6735 0.0730 15 1 5.6165 8.5496 0.4129 16 1 3.2755 8.5110 -0.2190 17 1 4.1719 6.7766 1.2193 18 6 7.8154 3.4654 -0.1001 19 6 8.3953 3.0135 -1.2783 20 6 9.7687 2.9020 -1.3718 21 6 10.5669 3.2503 -0.2977 22 6 12.0655 3.1334 -0.4053 23 6 9.9927 3.7011 0.8767 24 6 8.6196 3.8094 0.9786 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6885 1.8463 -0.8899 30 1 3.8566 0.6439 -0.8908 31 1 3.8574 0.6435 0.8891 32 1 3.8365 3.1227 0.8905 33 1 3.8358 3.1238 -0.8895 34 1 4.8750 4.8135 0.6798 35 1 6.4794 5.5806 0.6064 36 1 4.1968 7.9670 -2.7415 37 1 7.7726 2.7453 -2.1190 38 1 10.2199 2.5460 -2.2862 39 1 12.3762 2.1389 -0.0851 40 1 12.3690 3.2933 -1.4400 41 1 12.5351 3.8833 0.2311 42 1 10.6186 3.9684 1.7153 43 1 8.1716 4.1612 1.8963 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263801142.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:22 Heat of formation + Delta-G solvation = -83.453988 kcal Electronic energy + Delta-G solvation = -23110.364288 eV Core-core repulsion = 19733.589491 eV Total energy + Delta-G solvation = -3376.774797 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52118 -39.71639 -38.83186 -36.95369 -34.87682 -34.51305 -32.81901 -31.90120 -29.92935 -29.08743 -27.31562 -26.24702 -24.66378 -23.49673 -23.31336 -22.05039 -20.23125 -19.12002 -18.38893 -17.87493 -17.32333 -17.11758 -16.67747 -16.33963 -16.07209 -15.85561 -15.65719 -15.24562 -14.73832 -14.56045 -14.49241 -14.37395 -14.17954 -13.80904 -13.29057 -13.06644 -13.03322 -12.95550 -12.74056 -12.61333 -12.49101 -12.42045 -12.11349 -11.96049 -11.93479 -11.86681 -11.70820 -10.93410 -10.77619 -10.61206 -10.02264 -9.87516 -9.12019 -8.30789 -6.39124 0.33490 0.46979 1.40164 1.40921 1.50621 1.60702 2.10413 2.33561 2.77205 2.87421 3.03005 3.68891 3.93084 3.96882 4.04245 4.07545 4.18290 4.27962 4.41832 4.45242 4.49066 4.52364 4.53969 4.56591 4.59206 4.70048 4.79423 4.82287 4.84543 4.85797 4.91220 5.11020 5.13102 5.17138 5.22196 5.37509 5.39225 5.57329 5.66537 5.75829 6.08917 6.20074 6.23729 6.48854 6.65394 7.18308 7.29069 8.85479 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.010012 B = 0.005427 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2795.836076 B = 5158.528409 C = 7299.870780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.065 3.935 4 C -0.092 4.092 5 C -0.126 4.126 6 C 0.516 3.484 7 O -0.581 6.581 8 N -0.560 5.560 9 C 0.218 3.782 10 C -0.540 4.540 11 H 0.027 0.973 12 C 0.021 3.979 13 N -0.941 5.941 14 Si 0.940 3.060 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.230 1.230 18 C 0.127 3.873 19 C -0.129 4.129 20 C -0.118 4.118 21 C -0.098 4.098 22 C -0.105 4.105 23 C -0.109 4.109 24 C -0.133 4.133 25 H 0.047 0.953 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.269 0.731 37 H 0.092 0.908 38 H 0.140 0.860 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.158 0.842 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 -6.409 9.562 11.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.011 4.011 4 C -0.130 4.130 5 C -0.165 4.165 6 C 0.307 3.693 7 O -0.462 6.462 8 N -0.287 5.287 9 C 0.097 3.903 10 C -0.579 4.579 11 H 0.045 0.955 12 C -0.178 4.178 13 N -0.580 5.580 14 Si 0.762 3.238 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.152 1.152 18 C 0.036 3.964 19 C -0.149 4.149 20 C -0.136 4.136 21 C -0.098 4.098 22 C -0.162 4.162 23 C -0.128 4.128 24 C -0.152 4.152 25 H 0.066 0.934 26 H 0.117 0.883 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.135 0.865 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.158 0.842 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.176 0.824 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.737 -6.985 9.470 12.081 hybrid contribution -0.747 0.985 -0.463 1.320 sum 1.990 -6.000 9.007 11.003 Atomic orbital electron populations 1.22947 0.79335 1.03879 1.00972 1.87823 1.21689 1.28683 1.95655 1.22516 0.92580 0.84488 1.01554 1.21098 0.93647 0.95214 1.03044 1.21520 0.89590 0.99244 1.06183 1.21132 0.90847 0.82824 0.74482 1.90614 1.76154 1.27366 1.52052 1.45645 1.04082 1.08013 1.70934 1.19803 0.94556 0.79518 0.96380 1.21407 1.40713 1.03537 0.92201 0.95470 1.25777 0.94533 0.98364 0.99123 1.70051 1.43305 1.20323 1.24355 0.85832 0.78387 0.79463 0.80115 1.19443 1.20755 1.15231 1.17927 0.83423 1.00680 0.94333 1.21256 0.96251 1.01090 0.96311 1.21131 0.91845 1.00623 1.00044 1.20330 0.97946 0.98279 0.93240 1.20802 0.88370 1.03401 1.03612 1.21235 0.93462 0.99508 0.98561 1.21403 0.94695 1.01669 0.97449 0.93448 0.88343 0.92778 0.91181 0.92636 0.92732 0.91266 0.86530 0.88294 0.91962 0.94100 0.92203 0.88970 0.84223 0.90016 0.90856 0.89890 0.82424 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 11.01 113.37 1.25 1.71 16 2 O -0.42 -11.60 10.70 -148.98 -1.59 -13.20 16 3 C 0.06 1.73 5.94 71.98 0.43 2.15 16 4 C -0.09 -2.94 4.87 30.60 0.15 -2.79 16 5 C -0.13 -4.36 4.36 29.85 0.13 -4.23 16 6 C 0.52 21.78 7.53 87.66 0.66 22.44 16 7 O -0.58 -27.26 15.74 -3.05 -0.05 -27.31 16 8 N -0.56 -24.05 2.51 -635.30 -1.59 -25.64 16 9 C 0.22 9.46 3.95 85.63 0.34 9.80 16 10 C -0.54 -28.85 9.71 25.60 0.25 -28.61 16 11 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 12 C 0.02 1.13 5.47 84.65 0.46 1.59 16 13 N -0.94 -55.50 13.96 21.45 0.30 -55.20 16 14 Si 0.94 38.98 27.47 68.60 1.88 40.86 16 15 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 16 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.23 -8.21 6.54 99.48 0.65 -7.56 16 18 C 0.13 5.26 4.75 38.16 0.18 5.44 16 19 C -0.13 -5.33 9.55 22.39 0.21 -5.12 16 20 C -0.12 -3.87 9.69 22.25 0.22 -3.65 16 21 C -0.10 -2.69 5.88 -19.85 -0.12 -2.81 16 22 C -0.11 -1.91 10.01 71.24 0.71 -1.20 16 23 C -0.11 -3.04 9.69 22.25 0.22 -2.83 16 24 C -0.13 -4.54 9.69 22.39 0.22 -4.33 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.95 8.10 -2.39 -0.02 1.93 16 31 H 0.07 2.25 8.10 -2.39 -0.02 2.23 16 32 H 0.12 3.39 7.26 -2.38 -0.02 3.37 16 33 H 0.10 3.71 7.91 -2.39 -0.02 3.69 16 34 H 0.06 2.42 5.53 -2.39 -0.01 2.40 16 35 H 0.04 1.71 7.29 -2.39 -0.02 1.70 16 36 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 37 H 0.09 4.16 8.06 -2.91 -0.02 4.13 16 38 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 39 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 41 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 42 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 43 H 0.13 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -70.97 361.04 5.17 -65.80 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.92 Total: 27.11 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 5.30 Total: -12.42 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -1.29 Total: -80.84 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -1.64 Total: -40.50 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 1.88 Total: 40.86 kcal Total: -70.97 5.17 -65.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263801142.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.658 kcal (2) G-P(sol) polarization free energy of solvation -70.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds