Wall clock time and date at job start Tue Mar 31 2020 06:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38288 * 119.97510 * 2 1 4 4 C 1.38242 * 120.11134 * 179.97438 * 3 2 1 5 5 C 1.38160 * 120.05792 * 359.75953 * 4 3 2 6 6 C 1.50708 * 120.02934 * 180.25423 * 5 4 3 7 7 C 1.38711 * 119.94489 * 0.53842 * 5 4 3 8 8 O 1.35899 * 120.05673 * 179.71908 * 7 5 4 9 9 C 1.42903 * 116.99858 * 179.72127 * 8 7 5 10 10 C 1.50699 * 109.47132 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99799 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99910 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00033 * 0.02562 * 12 10 9 14 14 C 1.46497 * 119.99894 * 180.02562 * 12 10 9 15 15 H 1.09007 * 109.47078 * 359.97438 * 14 12 10 16 16 C 1.53000 * 109.47021 * 240.00308 * 14 12 10 17 17 C 1.50694 * 109.47115 * 120.00089 * 14 12 10 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.38124 * 119.97161 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.47199 * 269.97855 * 1 2 3 27 27 H 1.08998 * 109.46874 * 29.98068 * 1 2 3 28 28 H 1.08995 * 109.47155 * 149.97735 * 1 2 3 29 29 H 1.07998 * 119.93925 * 359.97438 * 3 2 1 30 30 H 1.08008 * 119.96927 * 180.02562 * 4 3 2 31 31 H 1.08993 * 109.47056 * 270.28217 * 6 5 4 32 32 H 1.08997 * 109.46677 * 30.28166 * 6 5 4 33 33 H 1.09000 * 109.46766 * 150.27802 * 6 5 4 34 34 H 1.09005 * 109.46887 * 60.00427 * 9 8 7 35 35 H 1.09000 * 109.47562 * 300.00525 * 9 8 7 36 36 H 1.09001 * 109.46905 * 269.99961 * 13 12 10 37 37 H 1.09005 * 109.47144 * 29.99902 * 13 12 10 38 38 H 1.08993 * 109.47302 * 150.00089 * 13 12 10 39 39 H 1.08998 * 109.47089 * 59.99825 * 16 14 12 40 40 H 1.08995 * 109.47131 * 179.97438 * 16 14 12 41 41 H 1.09002 * 109.47106 * 299.99878 * 16 14 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 43 43 H 1.07998 * 120.02641 * 0.02961 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0005 5 6 4.2752 0.0071 0.0061 6 6 5.7822 0.0114 0.0125 7 6 3.5846 -1.1959 -0.0002 8 8 4.2658 -2.3718 -0.0005 9 6 3.4892 -3.5714 -0.0009 10 6 4.4089 -4.7652 -0.0019 11 8 5.6110 -4.6046 -0.0017 12 7 3.8956 -6.0114 -0.0029 13 6 2.4435 -6.2055 -0.0037 14 6 4.7896 -7.1719 -0.0033 15 1 5.8255 -6.8326 -0.0030 16 6 4.5301 -8.0153 -1.2532 17 6 4.5329 -8.0042 1.2265 18 1 3.7794 -7.6991 1.9375 19 6 5.2607 -9.1549 1.4445 20 7 6.1786 -9.5262 0.5790 21 14 4.9429 -10.1861 2.9693 22 1 5.8492 -11.3626 2.9688 23 1 5.1947 -9.3672 4.1821 24 1 3.5319 -10.6489 2.9686 25 6 2.1970 -1.1965 -0.0005 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8897 -0.5142 29 1 1.6565 2.1324 -0.0004 30 1 4.1176 2.1381 0.0010 31 1 6.1499 0.0153 -1.0136 32 1 6.1407 0.9010 0.5302 33 1 6.1459 -0.8789 0.5255 34 1 2.8605 -3.5969 -0.8910 35 1 2.8603 -3.5975 0.8890 36 1 2.0829 -6.2543 1.0238 37 1 1.9657 -5.3711 -0.5172 38 1 2.2014 -7.1353 -0.5182 39 1 4.7158 -7.4132 -2.1427 40 1 5.1956 -8.8784 -1.2537 41 1 3.4943 -8.3546 -1.2539 42 1 6.6909 -10.3355 0.7326 43 1 1.6570 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264010629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:42 Heat of formation + Delta-G solvation = -53.513856 kcal Electronic energy + Delta-G solvation = -23119.551498 eV Core-core repulsion = 19744.075003 eV Total energy + Delta-G solvation = -3375.476496 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.43033 -39.05821 -37.39789 -35.33455 -33.85958 -32.93385 -30.41568 -29.79969 -29.28451 -27.69850 -26.19519 -25.23529 -24.82032 -22.71121 -21.17782 -20.94363 -18.47794 -17.66901 -16.75322 -16.31363 -16.06682 -15.81277 -15.57451 -15.16542 -14.42169 -14.32621 -14.18961 -13.72681 -13.33788 -13.24751 -12.95636 -12.75952 -12.67270 -12.44084 -12.37391 -11.91799 -11.76424 -11.59224 -11.57177 -11.35202 -11.09002 -10.92011 -10.90558 -10.82288 -10.72371 -10.29230 -10.19367 -9.23631 -9.00109 -8.79222 -8.45361 -8.07519 -7.68637 -6.09905 -4.18364 1.21505 1.38211 2.93191 3.21899 3.26690 3.31930 3.34427 3.63562 4.07926 4.38002 4.59031 4.69374 4.89176 4.93718 5.05053 5.09009 5.18395 5.21103 5.22700 5.39424 5.45822 5.53365 5.59743 5.60999 5.64528 5.78041 5.89881 5.96036 6.20226 6.23318 6.27478 6.43844 6.49859 6.70223 6.74192 6.78082 7.00254 7.29938 7.41955 7.49478 7.67214 7.97441 8.14335 8.42303 8.77988 8.94963 9.48080 10.95483 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024415 B = 0.003338 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.573286 B = 8387.065414 C = 8805.894981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.055 4.055 3 C -0.161 4.161 4 C -0.081 4.081 5 C -0.120 4.120 6 C -0.107 4.107 7 C 0.137 3.863 8 O -0.284 6.284 9 C 0.042 3.958 10 C 0.506 3.494 11 O -0.529 6.529 12 N -0.589 5.589 13 C 0.082 3.918 14 C 0.260 3.740 15 H 0.065 0.935 16 C -0.148 4.148 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.887 5.887 21 Si 0.900 3.100 22 H -0.286 1.286 23 H -0.277 1.277 24 H -0.277 1.277 25 C -0.210 4.210 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.012 0.988 40 H 0.095 0.905 41 H 0.031 0.969 42 H 0.264 0.736 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.317 17.546 -2.480 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.055 4.055 3 C -0.179 4.179 4 C -0.099 4.099 5 C -0.121 4.121 6 C -0.164 4.164 7 C 0.091 3.909 8 O -0.195 6.195 9 C -0.036 4.036 10 C 0.291 3.709 11 O -0.405 6.405 12 N -0.323 5.323 13 C -0.061 4.061 14 C 0.160 3.840 15 H 0.083 0.917 16 C -0.206 4.206 17 C -0.567 4.567 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.525 5.525 21 Si 0.728 3.272 22 H -0.211 1.211 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.228 4.228 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.145 0.855 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.031 0.969 40 H 0.114 0.886 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.309 17.400 -2.518 20.381 hybrid contribution -0.643 -0.758 0.852 1.309 sum -10.952 16.642 -1.666 19.992 Atomic orbital electron populations 1.20798 0.91140 1.02765 1.02396 1.19658 0.95881 0.92507 0.97461 1.20866 0.94072 0.97334 1.05606 1.20837 0.93946 0.96693 0.98430 1.19293 0.96775 0.90189 1.05845 1.20629 0.90345 1.02981 1.02423 1.18936 0.90315 0.85935 0.95741 1.86188 1.34222 1.11274 1.87862 1.22671 0.94356 0.83727 1.02880 1.19775 0.88778 0.83793 0.78588 1.90697 1.15080 1.85246 1.49527 1.48187 1.07292 1.06013 1.70785 1.21625 0.81290 1.01877 1.01347 1.18985 0.90519 0.80276 0.94210 0.91747 1.22106 1.00796 1.01955 0.95746 1.21266 1.21208 1.07763 1.06432 0.92279 1.24896 0.94754 0.97341 0.96758 1.69867 1.22717 1.24624 1.35333 0.86531 0.78059 0.79531 0.83122 1.21133 1.20209 1.20219 1.21134 0.92819 0.99000 1.09872 0.91049 0.91487 0.91506 0.86166 0.85523 0.91405 0.91939 0.90537 0.89692 0.89575 0.92953 0.93180 0.90369 0.96872 0.88649 0.95018 0.92553 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.00 0.36 -0.52 16 2 C -0.05 -0.59 5.88 -104.65 -0.62 -1.20 16 3 C -0.16 -1.63 9.70 -39.56 -0.38 -2.02 16 4 C -0.08 -0.88 9.70 -39.61 -0.38 -1.26 16 5 C -0.12 -1.59 5.89 -104.47 -0.62 -2.21 16 6 C -0.11 -1.33 9.79 36.01 0.35 -0.98 16 7 C 0.14 2.00 6.66 -39.21 -0.26 1.74 16 8 O -0.28 -4.89 8.71 -39.33 -0.34 -5.23 16 9 C 0.04 0.67 3.77 36.01 0.14 0.80 16 10 C 0.51 10.67 7.75 -10.98 -0.09 10.58 16 11 O -0.53 -13.60 15.83 -14.35 -0.23 -13.82 16 12 N -0.59 -12.41 2.75 -175.27 -0.48 -12.89 16 13 C 0.08 1.31 9.48 59.85 0.57 1.88 16 14 C 0.26 6.60 2.63 -69.09 -0.18 6.42 16 15 H 0.06 1.91 6.90 -51.92 -0.36 1.55 16 16 C -0.15 -3.48 8.95 37.16 0.33 -3.15 16 17 C -0.53 -14.18 8.37 -34.44 -0.29 -14.47 16 18 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 19 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -25.02 11.32 55.43 0.63 -24.39 16 21 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 C -0.21 -2.57 8.69 -39.43 -0.34 -2.92 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 29 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 33 H 0.08 1.12 7.53 -51.93 -0.39 0.73 16 34 H 0.09 1.09 6.92 -51.93 -0.36 0.74 16 35 H 0.09 1.16 7.63 -51.93 -0.40 0.76 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.60 6.44 -51.93 -0.33 0.26 16 38 H 0.08 1.25 6.43 -51.93 -0.33 0.92 16 39 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 41 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 43 H 0.13 1.36 6.30 -52.49 -0.33 1.02 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -32.26 351.83 -8.14 -40.40 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.50 Total: 0.36 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -1.50 Total: -5.64 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.15 Total: -37.28 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.57 Total: -19.06 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.26 -8.14 -40.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264010629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.111 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds