Wall clock time and date at job start Tue Mar 31 2020 06:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38288 * 119.97510 * 2 1 4 4 C 1.38242 * 120.11134 * 179.97438 * 3 2 1 5 5 C 1.38160 * 120.05792 * 359.75953 * 4 3 2 6 6 C 1.50708 * 120.02934 * 180.25423 * 5 4 3 7 7 C 1.38711 * 119.94489 * 0.53842 * 5 4 3 8 8 O 1.35899 * 120.05673 * 179.71908 * 7 5 4 9 9 C 1.42903 * 116.99858 * 179.72127 * 8 7 5 10 10 C 1.50699 * 109.47132 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99799 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99910 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00033 * 0.02562 * 12 10 9 14 14 C 1.46497 * 119.99894 * 180.02562 * 12 10 9 15 15 H 1.09007 * 109.47078 * 359.97438 * 14 12 10 16 16 C 1.53000 * 109.47021 * 240.00308 * 14 12 10 17 17 C 1.50694 * 109.47115 * 120.00089 * 14 12 10 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 C 1.38124 * 119.97161 * 180.02562 * 2 1 3 26 26 H 1.08996 * 109.47199 * 269.97855 * 1 2 3 27 27 H 1.08998 * 109.46874 * 29.98068 * 1 2 3 28 28 H 1.08995 * 109.47155 * 149.97735 * 1 2 3 29 29 H 1.07998 * 119.93925 * 359.97438 * 3 2 1 30 30 H 1.08008 * 119.96927 * 180.02562 * 4 3 2 31 31 H 1.08993 * 109.47056 * 270.28217 * 6 5 4 32 32 H 1.08997 * 109.46677 * 30.28166 * 6 5 4 33 33 H 1.09000 * 109.46766 * 150.27802 * 6 5 4 34 34 H 1.09005 * 109.46887 * 60.00427 * 9 8 7 35 35 H 1.09000 * 109.47562 * 300.00525 * 9 8 7 36 36 H 1.09001 * 109.46905 * 269.99961 * 13 12 10 37 37 H 1.09005 * 109.47144 * 29.99902 * 13 12 10 38 38 H 1.08993 * 109.47302 * 150.00089 * 13 12 10 39 39 H 1.08998 * 109.47089 * 59.99825 * 16 14 12 40 40 H 1.08995 * 109.47131 * 179.97438 * 16 14 12 41 41 H 1.09002 * 109.47106 * 299.99878 * 16 14 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 43 43 H 1.07998 * 120.02641 * 0.02961 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0005 5 6 4.2752 0.0071 0.0061 6 6 5.7822 0.0114 0.0125 7 6 3.5846 -1.1959 -0.0002 8 8 4.2658 -2.3718 -0.0005 9 6 3.4892 -3.5714 -0.0009 10 6 4.4089 -4.7652 -0.0019 11 8 5.6110 -4.6046 -0.0017 12 7 3.8956 -6.0114 -0.0029 13 6 2.4435 -6.2055 -0.0037 14 6 4.7896 -7.1719 -0.0033 15 1 5.8255 -6.8326 -0.0030 16 6 4.5301 -8.0153 -1.2532 17 6 4.5329 -8.0042 1.2265 18 1 3.7794 -7.6991 1.9375 19 6 5.2607 -9.1549 1.4445 20 7 6.1786 -9.5262 0.5790 21 14 4.9429 -10.1861 2.9693 22 1 5.8492 -11.3626 2.9688 23 1 5.1947 -9.3672 4.1821 24 1 3.5319 -10.6489 2.9686 25 6 2.1970 -1.1965 -0.0005 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8897 -0.5142 29 1 1.6565 2.1324 -0.0004 30 1 4.1176 2.1381 0.0010 31 1 6.1499 0.0153 -1.0136 32 1 6.1407 0.9010 0.5302 33 1 6.1459 -0.8789 0.5255 34 1 2.8605 -3.5969 -0.8910 35 1 2.8603 -3.5975 0.8890 36 1 2.0829 -6.2543 1.0238 37 1 1.9657 -5.3711 -0.5172 38 1 2.2014 -7.1353 -0.5182 39 1 4.7158 -7.4132 -2.1427 40 1 5.1956 -8.8784 -1.2537 41 1 3.4943 -8.3546 -1.2539 42 1 6.6909 -10.3355 0.7326 43 1 1.6570 -2.1318 -0.0014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264010629.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:41 Heat of formation + Delta-G solvation = -71.720160 kcal Electronic energy + Delta-G solvation = -23120.340983 eV Core-core repulsion = 19744.075003 eV Total energy + Delta-G solvation = -3376.265980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.53728 -40.52888 -38.50843 -37.13235 -34.91060 -34.65748 -31.95008 -31.01284 -30.06646 -29.06207 -27.65206 -27.28674 -25.64197 -23.87285 -22.63028 -21.99102 -20.09941 -18.79350 -18.56239 -17.71588 -17.41254 -17.31600 -16.72770 -16.44238 -15.97282 -15.79747 -15.03750 -14.83850 -14.63564 -14.47858 -14.09599 -13.93882 -13.86406 -13.67619 -13.49291 -13.40768 -13.08990 -12.93628 -12.79422 -12.68081 -12.65587 -12.61468 -12.19955 -12.18467 -12.14062 -11.82130 -11.79177 -11.22047 -10.73130 -10.50982 -9.64005 -9.42211 -9.01237 -8.16257 -6.33376 0.36722 0.49253 1.40850 1.43767 1.50651 1.61316 1.68719 2.39508 2.72651 2.77684 3.11880 3.49881 3.79152 3.91096 3.93445 4.05491 4.15030 4.29916 4.37112 4.40615 4.63791 4.66393 4.75824 4.76191 4.77473 4.81036 4.86793 4.88904 4.91696 5.00650 5.03890 5.18959 5.38423 5.40609 5.42864 5.53295 5.57571 5.63196 5.67799 5.90481 6.00647 6.12801 6.40875 6.70998 6.74422 7.23701 7.41008 8.88216 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024415 B = 0.003338 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.573286 B = 8387.065414 C = 8805.894981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.058 4.058 3 C -0.158 4.158 4 C -0.081 4.081 5 C -0.145 4.145 6 C -0.104 4.104 7 C 0.104 3.896 8 O -0.319 6.319 9 C 0.057 3.943 10 C 0.494 3.506 11 O -0.592 6.592 12 N -0.594 5.594 13 C 0.075 3.925 14 C 0.262 3.738 15 H 0.006 0.994 16 C -0.133 4.133 17 C -0.541 4.541 18 H 0.063 0.937 19 C 0.014 3.986 20 N -0.918 5.918 21 Si 0.967 3.033 22 H -0.284 1.284 23 H -0.278 1.278 24 H -0.260 1.260 25 C -0.215 4.215 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.020 0.980 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.265 0.735 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.967 19.126 -2.034 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.059 4.059 3 C -0.176 4.176 4 C -0.098 4.098 5 C -0.146 4.146 6 C -0.160 4.160 7 C 0.060 3.940 8 O -0.232 6.232 9 C -0.021 4.021 10 C 0.281 3.719 11 O -0.473 6.473 12 N -0.326 5.326 13 C -0.066 4.066 14 C 0.160 3.840 15 H 0.024 0.976 16 C -0.192 4.192 17 C -0.579 4.579 18 H 0.081 0.919 19 C -0.185 4.185 20 N -0.557 5.557 21 Si 0.791 3.209 22 H -0.210 1.210 23 H -0.204 1.204 24 H -0.184 1.184 25 C -0.234 4.234 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.168 0.832 30 H 0.169 0.831 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.062 0.938 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.095 0.905 39 H 0.039 0.961 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.026 18.992 -2.078 23.701 hybrid contribution 0.476 -1.131 0.694 1.410 sum -13.549 17.861 -1.384 22.461 Atomic orbital electron populations 1.20863 0.88773 1.03974 1.03326 1.20089 0.97629 0.92038 0.96102 1.21294 0.93910 0.98550 1.03875 1.21152 0.94630 0.96669 0.97377 1.19563 0.96957 0.90987 1.07106 1.20576 0.90772 1.02456 1.02223 1.19256 0.91550 0.85150 0.98093 1.86134 1.35816 1.12369 1.88877 1.22557 0.92667 0.81208 1.05631 1.20786 0.88848 0.85190 0.77047 1.90660 1.18131 1.86254 1.52234 1.48168 1.09134 1.05035 1.70236 1.21959 0.77964 1.03951 1.02766 1.18578 0.88842 0.81728 0.94844 0.97585 1.21887 1.01344 1.00684 0.95243 1.21548 1.21320 1.08029 1.07028 0.91868 1.25766 0.94448 0.98636 0.99689 1.70022 1.23550 1.25026 1.37098 0.85483 0.78700 0.77669 0.79013 1.20963 1.20376 1.18399 1.21365 0.91829 1.00550 1.09654 0.90103 0.89918 0.90774 0.83248 0.83052 0.91531 0.89581 0.93816 0.86246 0.86883 0.91940 0.88428 0.90457 0.96081 0.91315 0.92843 0.92584 0.83873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.24 0.71 -0.55 16 2 C -0.06 -1.05 5.88 -19.88 -0.12 -1.17 16 3 C -0.16 -2.68 9.70 22.28 0.22 -2.47 16 4 C -0.08 -1.57 9.70 22.25 0.22 -1.35 16 5 C -0.15 -3.79 5.89 -19.77 -0.12 -3.91 16 6 C -0.10 -2.67 9.79 71.24 0.70 -1.97 16 7 C 0.10 2.99 6.66 22.51 0.15 3.14 16 8 O -0.32 -11.19 8.71 -73.37 -0.64 -11.83 16 9 C 0.06 1.73 3.77 71.24 0.27 2.00 16 10 C 0.49 21.29 7.75 87.66 0.68 21.97 16 11 O -0.59 -32.48 15.83 16.01 0.25 -32.22 16 12 N -0.59 -25.05 2.75 -826.81 -2.28 -27.33 16 13 C 0.08 2.20 9.48 127.77 1.21 3.41 16 14 C 0.26 13.78 2.63 44.24 0.12 13.89 16 15 H 0.01 0.39 6.90 -2.38 -0.02 0.38 16 16 C -0.13 -6.41 8.95 71.98 0.64 -5.76 16 17 C -0.54 -29.47 8.37 25.60 0.21 -29.26 16 18 H 0.06 3.30 7.65 -2.91 -0.02 3.28 16 19 C 0.01 0.78 5.30 84.66 0.45 1.23 16 20 N -0.92 -53.38 11.32 21.45 0.24 -53.14 16 21 Si 0.97 43.04 29.54 68.60 2.03 45.07 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 C -0.22 -4.77 8.69 22.37 0.19 -4.58 16 26 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 28 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 29 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 30 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.70 8.09 -2.39 -0.02 1.68 16 33 H 0.04 1.39 7.53 -2.39 -0.02 1.37 16 34 H 0.12 2.72 6.92 -2.38 -0.02 2.71 16 35 H 0.11 2.77 7.63 -2.39 -0.02 2.75 16 36 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 1.91 6.44 -2.38 -0.02 1.89 16 38 H 0.08 2.28 6.43 -2.39 -0.02 2.26 16 39 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 41 H 0.05 2.28 6.66 -2.39 -0.02 2.26 16 42 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 43 H 0.14 2.55 6.30 -2.91 -0.02 2.53 16 Total: -1.00 -75.80 351.83 6.14 -69.66 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 1.00 Total: 15.16 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 5.54 Total: -5.37 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -2.03 Total: -80.46 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.39 Total: -44.05 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -75.80 6.14 -69.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264010629.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.061 kcal (2) G-P(sol) polarization free energy of solvation -75.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds