Wall clock time and date at job start Tue Mar 31 2020 06:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38291 * 119.97443 * 2 1 4 4 C 1.38235 * 120.11187 * 179.97438 * 3 2 1 5 5 C 1.38169 * 120.05798 * 359.76233 * 4 3 2 6 6 C 1.50694 * 120.03215 * 180.25135 * 5 4 3 7 7 C 1.38709 * 119.93906 * 0.53393 * 5 4 3 8 8 O 1.35910 * 120.05585 * 179.72457 * 7 5 4 9 9 C 1.42896 * 117.00141 * 179.72431 * 8 7 5 10 10 C 1.50694 * 109.47093 * 179.97438 * 9 8 7 11 11 O 1.21287 * 120.00211 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00297 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99458 * 359.97438 * 12 10 9 14 14 C 1.46502 * 120.00180 * 179.97438 * 12 10 9 15 15 H 1.08988 * 109.46989 * 359.97438 * 14 12 10 16 16 C 1.52999 * 109.46800 * 120.00415 * 14 12 10 17 17 C 1.50701 * 109.47064 * 240.00013 * 14 12 10 18 18 H 1.08005 * 119.99935 * 356.62305 * 17 14 12 19 19 C 1.37877 * 120.00206 * 176.62905 * 17 14 12 20 20 N 1.31514 * 119.99641 * 351.52449 * 19 17 14 21 21 Si 1.86799 * 120.00131 * 171.80826 * 19 17 14 22 22 H 1.48505 * 109.46565 * 264.97209 * 21 19 17 23 23 H 1.48494 * 109.47297 * 24.97223 * 21 19 17 24 24 H 1.48497 * 109.46920 * 144.97545 * 21 19 17 25 25 C 1.38126 * 119.97203 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47641 * 269.98678 * 1 2 3 27 27 H 1.09000 * 109.46541 * 29.98665 * 1 2 3 28 28 H 1.08996 * 109.47047 * 149.97674 * 1 2 3 29 29 H 1.08002 * 119.94298 * 359.97438 * 3 2 1 30 30 H 1.08004 * 119.97269 * 180.02562 * 4 3 2 31 31 H 1.09005 * 109.47598 * 270.27957 * 6 5 4 32 32 H 1.09007 * 109.47037 * 30.28247 * 6 5 4 33 33 H 1.09002 * 109.47233 * 150.27834 * 6 5 4 34 34 H 1.09000 * 109.47431 * 59.99612 * 9 8 7 35 35 H 1.09000 * 109.46975 * 299.99706 * 9 8 7 36 36 H 1.09001 * 109.47202 * 269.99926 * 13 12 10 37 37 H 1.09003 * 109.47187 * 30.00605 * 13 12 10 38 38 H 1.09001 * 109.46679 * 149.99978 * 13 12 10 39 39 H 1.09009 * 109.46613 * 305.89429 * 16 14 12 40 40 H 1.08992 * 109.47639 * 65.89827 * 16 14 12 41 41 H 1.08995 * 109.46632 * 185.90251 * 16 14 12 42 42 H 0.96998 * 119.99879 * 180.27648 * 20 19 17 43 43 H 1.07999 * 120.02603 * 0.03166 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2752 0.0071 0.0060 6 6 5.7821 0.0114 0.0123 7 6 3.5845 -1.1958 -0.0002 8 8 4.2657 -2.3719 -0.0005 9 6 3.4892 -3.5714 -0.0009 10 6 4.4089 -4.7652 -0.0018 11 8 5.6110 -4.6046 -0.0025 12 7 3.8955 -6.0114 -0.0018 13 6 2.4434 -6.2054 -0.0004 14 6 4.7897 -7.1720 -0.0032 15 1 5.8254 -6.8326 -0.0046 16 6 4.5307 -8.0167 1.2459 17 6 4.5322 -8.0029 -1.2338 18 1 3.7414 -7.7273 -1.9158 19 6 5.3061 -9.1151 -1.4890 20 7 6.3705 -9.3579 -0.7556 21 14 4.8475 -10.2726 -2.8815 22 1 4.0392 -11.3968 -2.3446 23 1 4.0555 -9.5348 -3.8981 24 1 6.0831 -10.8066 -3.5086 25 6 2.1971 -1.1965 -0.0005 26 1 -0.3634 -0.0002 1.0276 27 1 -0.3632 0.8901 -0.5136 28 1 -0.3633 -0.8897 -0.5142 29 1 1.6566 2.1325 -0.0004 30 1 4.1176 2.1382 0.0010 31 1 6.1499 0.0152 -1.0138 32 1 6.1408 0.9010 0.5302 33 1 6.1459 -0.8790 0.5253 34 1 2.8604 -3.5969 -0.8909 35 1 2.8603 -3.5975 0.8890 36 1 2.0843 -6.2540 1.0276 37 1 1.9649 -5.3712 -0.5135 38 1 2.2007 -7.1355 -0.5144 39 1 4.6147 -7.3887 2.1329 40 1 3.5286 -8.4422 1.1955 41 1 5.2646 -8.8208 1.2992 42 1 6.9172 -10.1381 -0.9377 43 1 1.6570 -2.1318 -0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264010632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:46 Heat of formation + Delta-G solvation = -55.230135 kcal Electronic energy + Delta-G solvation = -23116.822610 eV Core-core repulsion = 19741.271691 eV Total energy + Delta-G solvation = -3375.550919 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.42668 -39.05063 -37.39277 -35.31678 -33.85639 -32.89922 -30.43262 -29.84657 -29.28187 -27.73112 -26.15902 -25.22033 -24.81742 -22.71719 -21.18776 -20.96849 -18.48815 -17.66463 -16.74780 -16.33198 -16.06024 -15.78950 -15.56207 -15.17137 -14.41931 -14.29249 -14.18432 -13.73030 -13.35228 -13.22320 -12.95086 -12.74213 -12.58614 -12.45162 -12.33484 -11.91550 -11.80994 -11.66811 -11.62371 -11.35081 -11.05067 -10.98328 -10.91004 -10.82317 -10.77091 -10.28961 -10.22109 -9.27189 -8.98012 -8.78960 -8.43948 -8.07225 -7.69848 -6.11889 -4.17246 1.21727 1.38505 2.93623 3.22170 3.24832 3.32655 3.35101 3.63817 4.08472 4.37896 4.59277 4.69618 4.89518 4.94069 5.05923 5.10499 5.19138 5.20007 5.21356 5.39286 5.46116 5.53928 5.60789 5.62126 5.64711 5.78929 5.90038 5.91836 6.23587 6.26006 6.27726 6.44055 6.50094 6.66799 6.69609 6.75462 6.95138 7.25736 7.41616 7.51488 7.64721 7.89723 8.11865 8.41822 8.79140 8.95658 9.47901 10.95748 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024512 B = 0.003346 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.034046 B = 8367.160257 C = 8829.445832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.055 4.055 3 C -0.161 4.161 4 C -0.081 4.081 5 C -0.120 4.120 6 C -0.107 4.107 7 C 0.137 3.863 8 O -0.284 6.284 9 C 0.043 3.957 10 C 0.506 3.494 11 O -0.528 6.528 12 N -0.589 5.589 13 C 0.079 3.921 14 C 0.258 3.742 15 H 0.069 0.931 16 C -0.140 4.140 17 C -0.532 4.532 18 H 0.061 0.939 19 C 0.067 3.933 20 N -0.884 5.884 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.274 1.274 24 H -0.285 1.285 25 C -0.209 4.209 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.015 0.985 40 H 0.034 0.966 41 H 0.078 0.922 42 H 0.264 0.736 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.704 17.294 2.790 21.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.055 4.055 3 C -0.179 4.179 4 C -0.099 4.099 5 C -0.121 4.121 6 C -0.164 4.164 7 C 0.091 3.909 8 O -0.195 6.195 9 C -0.036 4.036 10 C 0.291 3.709 11 O -0.404 6.404 12 N -0.323 5.323 13 C -0.065 4.065 14 C 0.158 3.842 15 H 0.087 0.913 16 C -0.199 4.199 17 C -0.570 4.570 18 H 0.079 0.921 19 C -0.136 4.136 20 N -0.521 5.521 21 Si 0.724 3.276 22 H -0.206 1.206 23 H -0.199 1.199 24 H -0.211 1.211 25 C -0.228 4.228 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.138 0.862 30 H 0.145 0.855 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.034 0.966 40 H 0.053 0.947 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.678 17.170 2.813 20.414 hybrid contribution -0.691 -0.854 -0.773 1.343 sum -11.369 16.316 2.040 19.991 Atomic orbital electron populations 1.20799 0.91143 1.02797 1.02360 1.19660 0.95878 0.92507 0.97472 1.20865 0.94073 0.97332 1.05607 1.20837 0.93945 0.96693 0.98433 1.19292 0.96776 0.90189 1.05831 1.20629 0.90341 1.02922 1.02485 1.18935 0.90313 0.85936 0.95739 1.86190 1.34220 1.11271 1.87863 1.22664 0.94356 0.83736 1.02866 1.19777 0.88782 0.83792 0.78578 1.90704 1.15063 1.85235 1.49400 1.48171 1.07246 1.06007 1.70836 1.21677 0.81306 1.02876 1.00645 1.18990 0.90836 0.80375 0.93976 0.91274 1.22018 1.01038 1.00618 0.96233 1.21275 1.17822 1.10164 1.07746 0.92117 1.24900 0.94310 0.97835 0.96548 1.69961 1.14268 1.27756 1.40121 0.86510 0.78073 0.80982 0.82014 1.20588 1.19881 1.21113 1.21132 0.92820 0.98998 1.09872 0.91073 0.91483 0.91493 0.86167 0.85523 0.91358 0.91952 0.90566 0.89571 0.89717 0.93554 0.93024 0.89641 0.96585 0.94690 0.90317 0.92625 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 2 C -0.06 -0.59 5.88 -104.64 -0.62 -1.20 16 3 C -0.16 -1.64 9.70 -39.56 -0.38 -2.02 16 4 C -0.08 -0.88 9.70 -39.61 -0.38 -1.27 16 5 C -0.12 -1.60 5.89 -104.48 -0.62 -2.21 16 6 C -0.11 -1.34 9.79 36.00 0.35 -0.99 16 7 C 0.14 2.00 6.66 -39.22 -0.26 1.74 16 8 O -0.28 -4.90 8.71 -39.37 -0.34 -5.24 16 9 C 0.04 0.67 3.77 36.00 0.14 0.80 16 10 C 0.51 10.68 7.75 -10.99 -0.09 10.60 16 11 O -0.53 -13.62 15.83 -14.36 -0.23 -13.84 16 12 N -0.59 -12.36 2.75 -175.26 -0.48 -12.84 16 13 C 0.08 1.24 9.35 59.85 0.56 1.80 16 14 C 0.26 6.53 2.52 -69.08 -0.17 6.35 16 15 H 0.07 2.06 6.89 -51.94 -0.36 1.70 16 16 C -0.14 -3.27 8.85 37.16 0.33 -2.94 16 17 C -0.53 -14.20 8.00 -34.44 -0.28 -14.47 16 18 H 0.06 1.58 7.22 -52.48 -0.38 1.20 16 19 C 0.07 1.83 5.24 -17.82 -0.09 1.74 16 20 N -0.88 -25.14 12.01 55.43 0.67 -24.47 16 21 Si 0.90 20.81 29.55 -169.99 -5.02 15.79 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 C -0.21 -2.58 8.69 -39.43 -0.34 -2.92 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 30 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.08 1.11 7.53 -51.93 -0.39 0.72 16 34 H 0.09 1.16 6.92 -51.93 -0.36 0.80 16 35 H 0.08 1.09 7.63 -51.93 -0.40 0.70 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.64 6.44 -51.93 -0.33 0.30 16 38 H 0.08 1.43 6.96 -51.93 -0.36 1.07 16 39 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 40 H 0.03 0.74 7.86 -51.93 -0.41 0.34 16 41 H 0.08 2.00 6.84 -51.93 -0.36 1.64 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.13 1.36 6.30 -52.49 -0.33 1.02 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -32.43 353.81 -8.18 -40.61 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.60 Total: 0.19 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -1.49 Total: -5.51 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.18 Total: -37.32 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.57 Total: -19.09 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.43 -8.18 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264010632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.623 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds