Wall clock time and date at job start Tue Mar 31 2020 06:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38291 * 119.97443 * 2 1 4 4 C 1.38235 * 120.11187 * 179.97438 * 3 2 1 5 5 C 1.38169 * 120.05798 * 359.76233 * 4 3 2 6 6 C 1.50694 * 120.03215 * 180.25135 * 5 4 3 7 7 C 1.38709 * 119.93906 * 0.53393 * 5 4 3 8 8 O 1.35910 * 120.05585 * 179.72457 * 7 5 4 9 9 C 1.42896 * 117.00141 * 179.72431 * 8 7 5 10 10 C 1.50694 * 109.47093 * 179.97438 * 9 8 7 11 11 O 1.21287 * 120.00211 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00297 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99458 * 359.97438 * 12 10 9 14 14 C 1.46502 * 120.00180 * 179.97438 * 12 10 9 15 15 H 1.08988 * 109.46989 * 359.97438 * 14 12 10 16 16 C 1.52999 * 109.46800 * 120.00415 * 14 12 10 17 17 C 1.50701 * 109.47064 * 240.00013 * 14 12 10 18 18 H 1.08005 * 119.99935 * 356.62305 * 17 14 12 19 19 C 1.37877 * 120.00206 * 176.62905 * 17 14 12 20 20 N 1.31514 * 119.99641 * 351.52449 * 19 17 14 21 21 Si 1.86799 * 120.00131 * 171.80826 * 19 17 14 22 22 H 1.48505 * 109.46565 * 264.97209 * 21 19 17 23 23 H 1.48494 * 109.47297 * 24.97223 * 21 19 17 24 24 H 1.48497 * 109.46920 * 144.97545 * 21 19 17 25 25 C 1.38126 * 119.97203 * 180.02562 * 2 1 3 26 26 H 1.09001 * 109.47641 * 269.98678 * 1 2 3 27 27 H 1.09000 * 109.46541 * 29.98665 * 1 2 3 28 28 H 1.08996 * 109.47047 * 149.97674 * 1 2 3 29 29 H 1.08002 * 119.94298 * 359.97438 * 3 2 1 30 30 H 1.08004 * 119.97269 * 180.02562 * 4 3 2 31 31 H 1.09005 * 109.47598 * 270.27957 * 6 5 4 32 32 H 1.09007 * 109.47037 * 30.28247 * 6 5 4 33 33 H 1.09002 * 109.47233 * 150.27834 * 6 5 4 34 34 H 1.09000 * 109.47431 * 59.99612 * 9 8 7 35 35 H 1.09000 * 109.46975 * 299.99706 * 9 8 7 36 36 H 1.09001 * 109.47202 * 269.99926 * 13 12 10 37 37 H 1.09003 * 109.47187 * 30.00605 * 13 12 10 38 38 H 1.09001 * 109.46679 * 149.99978 * 13 12 10 39 39 H 1.09009 * 109.46613 * 305.89429 * 16 14 12 40 40 H 1.08992 * 109.47639 * 65.89827 * 16 14 12 41 41 H 1.08995 * 109.46632 * 185.90251 * 16 14 12 42 42 H 0.96998 * 119.99879 * 180.27648 * 20 19 17 43 43 H 1.07999 * 120.02603 * 0.03166 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 0.0005 5 6 4.2752 0.0071 0.0060 6 6 5.7821 0.0114 0.0123 7 6 3.5845 -1.1958 -0.0002 8 8 4.2657 -2.3719 -0.0005 9 6 3.4892 -3.5714 -0.0009 10 6 4.4089 -4.7652 -0.0018 11 8 5.6110 -4.6046 -0.0025 12 7 3.8955 -6.0114 -0.0018 13 6 2.4434 -6.2054 -0.0004 14 6 4.7897 -7.1720 -0.0032 15 1 5.8254 -6.8326 -0.0046 16 6 4.5307 -8.0167 1.2459 17 6 4.5322 -8.0029 -1.2338 18 1 3.7414 -7.7273 -1.9158 19 6 5.3061 -9.1151 -1.4890 20 7 6.3705 -9.3579 -0.7556 21 14 4.8475 -10.2726 -2.8815 22 1 4.0392 -11.3968 -2.3446 23 1 4.0555 -9.5348 -3.8981 24 1 6.0831 -10.8066 -3.5086 25 6 2.1971 -1.1965 -0.0005 26 1 -0.3634 -0.0002 1.0276 27 1 -0.3632 0.8901 -0.5136 28 1 -0.3633 -0.8897 -0.5142 29 1 1.6566 2.1325 -0.0004 30 1 4.1176 2.1382 0.0010 31 1 6.1499 0.0152 -1.0138 32 1 6.1408 0.9010 0.5302 33 1 6.1459 -0.8790 0.5253 34 1 2.8604 -3.5969 -0.8909 35 1 2.8603 -3.5975 0.8890 36 1 2.0843 -6.2540 1.0276 37 1 1.9649 -5.3712 -0.5135 38 1 2.2007 -7.1355 -0.5144 39 1 4.6147 -7.3887 2.1329 40 1 3.5286 -8.4422 1.1955 41 1 5.2646 -8.8208 1.2992 42 1 6.9172 -10.1381 -0.9377 43 1 1.6570 -2.1318 -0.0015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264010632.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:46 Heat of formation + Delta-G solvation = -73.682073 kcal Electronic energy + Delta-G solvation = -23117.622746 eV Core-core repulsion = 19741.271691 eV Total energy + Delta-G solvation = -3376.351055 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.53323 -40.52014 -38.50423 -37.10967 -34.88101 -34.65111 -32.00494 -31.02464 -30.06574 -29.08367 -27.58817 -27.28136 -25.64124 -23.88849 -22.65366 -21.99178 -20.10206 -18.79003 -18.56276 -17.71818 -17.40119 -17.29741 -16.70767 -16.43600 -15.94884 -15.79807 -15.03806 -14.83915 -14.62973 -14.37738 -14.08255 -13.91417 -13.84486 -13.67848 -13.64377 -13.40352 -13.09586 -12.92638 -12.79972 -12.68456 -12.65101 -12.63427 -12.26536 -12.18821 -12.11619 -11.82164 -11.78910 -11.24295 -10.70079 -10.51073 -9.63925 -9.42165 -9.01162 -8.18309 -6.32129 0.36754 0.49377 1.41343 1.42417 1.52588 1.62727 1.68404 2.40040 2.73108 2.77883 3.11434 3.50733 3.79665 3.91345 3.94197 4.05173 4.15107 4.30035 4.37258 4.42863 4.63944 4.72741 4.73625 4.75956 4.77305 4.80742 4.83275 4.89065 4.91771 4.98326 5.02266 5.18991 5.38477 5.40711 5.45724 5.48080 5.55546 5.64135 5.67828 5.89401 5.97200 6.10151 6.41022 6.71676 6.75980 7.24761 7.41327 8.89082 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024512 B = 0.003346 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.034046 B = 8367.160257 C = 8829.445832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.058 4.058 3 C -0.158 4.158 4 C -0.081 4.081 5 C -0.146 4.146 6 C -0.104 4.104 7 C 0.104 3.896 8 O -0.319 6.319 9 C 0.058 3.942 10 C 0.493 3.507 11 O -0.592 6.592 12 N -0.594 5.594 13 C 0.071 3.929 14 C 0.260 3.740 15 H 0.009 0.991 16 C -0.125 4.125 17 C -0.541 4.541 18 H 0.066 0.934 19 C 0.015 3.985 20 N -0.920 5.920 21 Si 0.966 3.034 22 H -0.267 1.267 23 H -0.266 1.266 24 H -0.289 1.289 25 C -0.215 4.215 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.150 0.850 30 H 0.152 0.848 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.026 0.974 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.264 0.736 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.536 18.811 2.363 24.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.059 4.059 3 C -0.176 4.176 4 C -0.098 4.098 5 C -0.146 4.146 6 C -0.160 4.160 7 C 0.060 3.940 8 O -0.232 6.232 9 C -0.020 4.020 10 C 0.281 3.719 11 O -0.473 6.473 12 N -0.325 5.325 13 C -0.070 4.070 14 C 0.158 3.842 15 H 0.027 0.973 16 C -0.184 4.184 17 C -0.580 4.580 18 H 0.084 0.916 19 C -0.185 4.185 20 N -0.558 5.558 21 Si 0.791 3.209 22 H -0.192 1.192 23 H -0.190 1.190 24 H -0.215 1.215 25 C -0.234 4.234 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.168 0.832 30 H 0.169 0.831 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.581 18.698 2.391 23.831 hybrid contribution 0.480 -1.201 -0.618 1.433 sum -14.101 17.498 1.773 22.542 Atomic orbital electron populations 1.20864 0.88761 1.03930 1.03372 1.20092 0.97633 0.92033 0.96095 1.21294 0.93904 0.98554 1.03879 1.21152 0.94635 0.96664 0.97377 1.19562 0.96946 0.90998 1.07117 1.20576 0.90788 1.02513 1.02158 1.19257 0.91556 0.85148 0.98086 1.86136 1.35835 1.12380 1.88877 1.22551 0.92660 0.81204 1.05617 1.20790 0.88835 0.85218 0.77059 1.90667 1.18162 1.86260 1.52197 1.48159 1.09142 1.04997 1.70248 1.22014 0.77902 1.04168 1.02952 1.18590 0.89071 0.81824 0.94721 0.97282 1.21795 1.01220 0.99593 0.95756 1.21575 1.17765 1.10357 1.08285 0.91577 1.25789 0.94070 0.99524 0.99142 1.70114 1.15394 1.28326 1.42009 0.85426 0.77637 0.78956 0.78895 1.19179 1.19046 1.21538 1.21363 0.91820 1.00553 1.09651 0.89969 0.89974 0.90843 0.83243 0.83057 0.91723 0.89503 0.93722 0.86806 0.86341 0.90793 0.89003 0.90568 0.95466 0.92597 0.93050 0.92659 0.83864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 10.01 71.24 0.71 -0.54 16 2 C -0.06 -1.05 5.88 -19.88 -0.12 -1.17 16 3 C -0.16 -2.69 9.70 22.28 0.22 -2.47 16 4 C -0.08 -1.57 9.70 22.25 0.22 -1.36 16 5 C -0.15 -3.81 5.89 -19.77 -0.12 -3.93 16 6 C -0.10 -2.69 9.79 71.23 0.70 -1.99 16 7 C 0.10 3.00 6.66 22.50 0.15 3.15 16 8 O -0.32 -11.24 8.71 -73.50 -0.64 -11.88 16 9 C 0.06 1.74 3.77 71.23 0.27 2.01 16 10 C 0.49 21.31 7.75 87.65 0.68 21.99 16 11 O -0.59 -32.66 15.83 15.98 0.25 -32.41 16 12 N -0.59 -24.91 2.75 -826.79 -2.28 -27.19 16 13 C 0.07 2.05 9.35 127.77 1.19 3.24 16 14 C 0.26 13.60 2.52 44.24 0.11 13.72 16 15 H 0.01 0.59 6.89 -2.39 -0.02 0.57 16 16 C -0.12 -5.92 8.85 71.98 0.64 -5.29 16 17 C -0.54 -29.35 8.00 25.60 0.20 -29.15 16 18 H 0.07 3.43 7.22 -2.91 -0.02 3.40 16 19 C 0.01 0.80 5.24 84.65 0.44 1.25 16 20 N -0.92 -54.20 12.01 21.45 0.26 -53.95 16 21 Si 0.97 42.88 29.55 68.60 2.03 44.91 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 25 C -0.22 -4.78 8.69 22.36 0.19 -4.58 16 26 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 28 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 29 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 30 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.09 1.71 8.09 -2.38 -0.02 1.69 16 33 H 0.04 1.41 7.53 -2.39 -0.02 1.39 16 34 H 0.11 2.76 6.92 -2.39 -0.02 2.75 16 35 H 0.12 2.74 7.63 -2.39 -0.02 2.72 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.09 1.89 6.44 -2.39 -0.02 1.88 16 38 H 0.08 2.36 6.96 -2.39 -0.02 2.34 16 39 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.06 2.36 7.86 -2.39 -0.02 2.34 16 41 H 0.05 2.70 6.84 -2.39 -0.02 2.68 16 42 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 43 H 0.14 2.55 6.30 -2.91 -0.02 2.53 16 Total: -1.00 -76.56 353.81 6.11 -70.46 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.99 Total: 15.18 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 5.49 Total: -5.12 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -2.02 Total: -81.14 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -0.39 Total: -44.29 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -76.56 6.11 -70.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264010632.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.226 kcal (2) G-P(sol) polarization free energy of solvation -76.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds