Wall clock time and date at job start Tue Mar 31 2020 07:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.54172 * 2 1 4 4 C 1.53100 * 109.50862 * 239.88820 * 2 1 3 5 5 O 1.43011 * 109.26029 * 183.22171 * 4 2 1 6 6 C 1.43015 * 113.74326 * 58.66876 * 5 4 2 7 7 C 1.53099 * 109.25683 * 301.33291 * 6 5 4 8 8 N 1.47018 * 109.50267 * 120.10868 * 2 1 3 9 9 C 1.46899 * 111.00137 * 302.32474 * 8 2 1 10 10 C 1.50694 * 109.47260 * 171.08063 * 9 8 2 11 11 C 1.38307 * 119.93309 * 95.39835 * 10 9 8 12 12 C 1.38095 * 120.06756 * 180.02562 * 11 10 9 13 13 C 1.38877 * 119.93474 * 359.97438 * 12 11 10 14 14 O 1.35751 * 120.07095 * 180.02562 * 13 12 11 15 15 C 1.34830 * 117.00147 * 5.62801 * 14 13 12 16 16 H 1.07999 * 119.99606 * 354.93608 * 15 14 13 17 17 C 1.38650 * 120.00023 * 174.93662 * 15 14 13 18 18 N 1.31561 * 120.00397 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99987 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47208 * 89.99499 * 19 17 15 21 21 H 1.48496 * 109.46950 * 209.99936 * 19 17 15 22 22 H 1.48504 * 109.46754 * 329.99597 * 19 17 15 23 23 C 1.38882 * 119.86146 * 0.27639 * 13 12 11 24 24 C 1.38102 * 119.92847 * 359.44813 * 23 13 12 25 25 H 1.09000 * 109.47286 * 299.89094 * 1 2 3 26 26 H 1.09002 * 109.46746 * 59.89241 * 1 2 3 27 27 H 1.09003 * 109.47190 * 179.89057 * 1 2 3 28 28 H 1.09007 * 109.46968 * 185.06105 * 3 2 1 29 29 H 1.08998 * 109.47203 * 305.06097 * 3 2 1 30 30 H 1.09000 * 109.47538 * 65.06294 * 3 2 1 31 31 H 1.08994 * 109.50717 * 63.28182 * 4 2 1 32 32 H 1.09007 * 109.50502 * 303.15565 * 4 2 1 33 33 H 1.09000 * 109.50946 * 181.39720 * 6 5 4 34 34 H 1.09001 * 109.50176 * 61.26258 * 6 5 4 35 35 H 1.09004 * 109.50818 * 296.91434 * 7 6 5 36 36 H 1.09000 * 109.50634 * 176.77765 * 7 6 5 37 37 H 1.08995 * 109.46979 * 51.07609 * 9 8 2 38 38 H 1.09000 * 109.46911 * 291.07674 * 9 8 2 39 39 H 1.07996 * 119.96498 * 0.02562 * 11 10 9 40 40 H 1.07997 * 120.03469 * 179.97438 * 12 11 10 41 41 H 0.96995 * 119.99907 * 179.97438 * 18 17 15 42 42 H 1.07997 * 120.03403 * 179.72038 * 23 13 12 43 43 H 1.07998 * 119.96670 * 180.27187 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4418 0.0000 4 6 2.0413 -0.7240 -1.2484 5 8 3.4694 -0.7869 -1.2055 6 6 3.9819 -1.4580 -0.0513 7 6 3.4903 -0.7414 1.2092 8 7 2.0208 -0.6952 1.1988 9 6 1.5054 -0.0644 2.4213 10 6 1.8446 -0.9241 3.6116 11 6 2.9791 -0.6557 4.3557 12 6 3.2930 -1.4420 5.4467 13 6 2.4678 -2.5028 5.7968 14 8 2.7734 -3.2773 6.8690 15 6 3.8253 -2.8945 7.6207 16 1 4.4317 -2.0555 7.3132 17 6 4.1283 -3.5782 8.7882 18 7 3.3892 -4.6000 9.1630 19 14 5.5853 -3.0475 9.8300 20 1 5.1401 -2.0421 10.8280 21 1 6.1470 -4.2284 10.5335 22 1 6.6270 -2.4501 8.9562 23 6 1.3321 -2.7729 5.0444 24 6 1.0206 -1.9795 3.9579 25 1 -0.3634 0.5121 0.8910 26 1 -0.3633 0.5155 -0.8891 27 1 -0.3634 -1.0277 -0.0020 28 1 3.1281 1.4418 -0.0907 29 1 1.6070 1.9817 -0.8412 30 1 1.7550 1.9292 0.9318 31 1 1.7275 -0.1797 -2.1390 32 1 1.6331 -1.7344 -1.2759 33 1 5.0715 -1.4443 -0.0761 34 1 3.6301 -2.4896 -0.0441 35 1 3.8862 0.2740 1.2285 36 1 3.8311 -1.2826 2.0918 37 1 0.4232 0.0421 2.3466 38 1 1.9598 0.9190 2.5421 39 1 3.6202 0.1695 4.0833 40 1 4.1792 -1.2323 6.0272 41 1 3.6015 -5.0784 9.9796 42 1 0.6909 -3.5999 5.3114 43 1 0.1352 -2.1863 3.3750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264080364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:16 Heat of formation + Delta-G solvation = -38.601881 kcal Electronic energy + Delta-G solvation = -23614.359096 eV Core-core repulsion = 20239.529232 eV Total energy + Delta-G solvation = -3374.829864 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.40059 -38.95065 -36.97008 -35.84319 -33.25913 -32.27063 -30.37437 -30.17135 -27.90617 -27.51228 -26.76944 -25.44623 -23.64670 -22.66572 -21.84941 -20.44230 -18.72466 -17.97796 -17.00642 -16.58582 -16.28691 -15.67268 -15.17143 -14.86618 -14.57511 -14.29434 -14.11378 -13.87974 -13.53401 -13.50335 -13.37469 -12.86297 -12.69508 -12.38672 -12.31350 -12.01792 -11.92160 -11.70175 -11.30837 -11.29812 -11.28002 -11.17115 -10.79955 -10.61866 -10.51735 -10.44556 -10.38220 -9.59508 -9.33932 -8.83880 -8.26240 -8.15072 -7.17353 -6.45837 -4.04766 2.21906 2.27582 3.11654 3.12697 3.17354 3.75841 3.86732 3.95851 4.54386 4.64209 4.81194 4.87311 4.93951 5.08983 5.19286 5.20477 5.29164 5.37349 5.41131 5.44264 5.49136 5.54362 5.64998 5.68013 5.71587 5.74745 5.80231 5.84196 5.89955 5.98347 6.05855 6.17282 6.22248 6.42461 6.70952 6.89235 6.97468 7.05671 7.07593 7.16233 7.27825 7.40458 7.44577 7.83019 7.99220 8.99861 9.70327 10.72228 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029037 B = 0.003360 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.050644 B = 8331.042475 C = 8675.302309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.067 3.933 3 C -0.176 4.176 4 C 0.076 3.924 5 O -0.386 6.386 6 C 0.063 3.937 7 C 0.016 3.984 8 N -0.518 5.518 9 C 0.108 3.892 10 C -0.180 4.180 11 C -0.067 4.067 12 C -0.234 4.234 13 C 0.156 3.844 14 O -0.178 6.178 15 C -0.392 4.392 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.194 4.194 24 C -0.051 4.051 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.101 0.899 40 H 0.125 0.875 41 H 0.270 0.730 42 H 0.116 0.884 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.681 9.519 -17.166 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 C -0.235 4.235 4 C -0.001 4.001 5 O -0.305 6.305 6 C -0.014 4.014 7 C -0.112 4.112 8 N -0.243 5.243 9 C -0.018 4.018 10 C -0.181 4.181 11 C -0.085 4.085 12 C -0.254 4.254 13 C 0.102 3.898 14 O -0.082 6.082 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.214 4.214 24 C -0.070 4.070 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.119 0.881 40 H 0.143 0.857 41 H 0.080 0.920 42 H 0.134 0.866 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.837 8.726 -17.035 19.349 hybrid contribution 0.950 1.036 0.897 1.668 sum -1.887 9.762 -16.138 18.954 Atomic orbital electron populations 1.21865 0.93198 1.02793 1.01967 1.21737 0.95933 0.92552 0.92031 1.22391 1.02269 0.96834 1.02011 1.22647 0.81128 0.99921 0.96397 1.87940 1.20527 1.78528 1.43484 1.22688 0.98708 0.95845 0.84126 1.22809 0.88406 1.00154 0.99836 1.62513 1.08261 1.52330 1.01177 1.20907 0.99788 0.94088 0.87048 1.19068 0.98807 1.01084 0.99132 1.20594 0.95544 0.97840 0.94556 1.21110 1.03153 0.99838 1.01278 1.19401 0.92452 0.89499 0.88456 1.83980 1.46376 1.44914 1.32881 1.21317 1.05265 1.16538 1.03707 0.89120 1.25283 0.98995 0.95755 0.96458 1.70038 1.37821 1.18536 1.23360 0.85722 0.79855 0.78317 0.79601 1.19885 1.20238 1.19216 1.20221 0.98340 1.03828 0.98989 1.20430 0.98054 0.93594 0.94890 0.91846 0.92229 0.91536 0.91802 0.92279 0.92389 0.88976 0.92389 0.88706 0.92248 0.94107 0.88711 0.90282 0.94796 0.88064 0.85697 0.92017 0.86619 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.20 37.16 0.30 -0.96 16 2 C 0.07 0.71 0.68 -131.49 -0.09 0.62 16 3 C -0.18 -1.77 7.71 37.15 0.29 -1.49 16 4 C 0.08 0.79 5.70 37.21 0.21 1.00 16 5 O -0.39 -4.71 10.20 -35.23 -0.36 -5.07 16 6 C 0.06 0.74 7.01 37.21 0.26 1.00 16 7 C 0.02 0.20 4.93 -3.71 -0.02 0.19 16 8 N -0.52 -6.57 4.49 -220.10 -0.99 -7.56 16 9 C 0.11 1.45 4.27 -4.98 -0.02 1.42 16 10 C -0.18 -2.99 4.70 -104.57 -0.49 -3.48 16 11 C -0.07 -1.19 8.29 -39.61 -0.33 -1.52 16 12 C -0.23 -5.03 9.17 -39.40 -0.36 -5.39 16 13 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 14 O -0.18 -5.09 9.76 0.05 0.00 -5.09 16 15 C -0.39 -10.94 9.49 30.88 0.29 -10.64 16 16 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.29 13.67 55.48 0.76 -24.53 16 19 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 C -0.19 -4.10 9.99 -39.39 -0.39 -4.49 16 24 C -0.05 -0.90 9.71 -39.61 -0.38 -1.29 16 25 H 0.06 0.58 6.18 -51.93 -0.32 0.26 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.71 6.20 -51.93 -0.32 0.39 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.59 6.42 -51.93 -0.33 0.26 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.51 6.50 -51.93 -0.34 0.18 16 36 H 0.09 1.37 6.27 -51.93 -0.33 1.05 16 37 H 0.08 0.98 5.78 -51.93 -0.30 0.68 16 38 H 0.03 0.45 6.64 -51.93 -0.34 0.10 16 39 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.13 2.70 5.64 -52.49 -0.30 2.41 16 41 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 43 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -30.19 335.31 -7.86 -38.05 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.22 Total: 4.25 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -1.09 Total: -20.56 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: -0.23 Total: -32.09 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.36 Total: -10.15 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.19 -7.86 -38.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264080364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.548 kcal (2) G-P(sol) polarization free energy of solvation -30.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds