Wall clock time and date at job start Tue Mar 31 2020 07:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.54172 * 2 1 4 4 C 1.53100 * 109.50862 * 239.88820 * 2 1 3 5 5 O 1.43011 * 109.26029 * 183.22171 * 4 2 1 6 6 C 1.43015 * 113.74326 * 58.66876 * 5 4 2 7 7 C 1.53099 * 109.25683 * 301.33291 * 6 5 4 8 8 N 1.47018 * 109.50267 * 120.10868 * 2 1 3 9 9 C 1.46899 * 111.00137 * 302.32474 * 8 2 1 10 10 C 1.50694 * 109.47260 * 171.08063 * 9 8 2 11 11 C 1.38307 * 119.93309 * 95.39835 * 10 9 8 12 12 C 1.38095 * 120.06756 * 180.02562 * 11 10 9 13 13 C 1.38877 * 119.93474 * 359.97438 * 12 11 10 14 14 O 1.35751 * 120.07095 * 180.02562 * 13 12 11 15 15 C 1.34830 * 117.00147 * 5.62801 * 14 13 12 16 16 H 1.07999 * 119.99606 * 354.93608 * 15 14 13 17 17 C 1.38650 * 120.00023 * 174.93662 * 15 14 13 18 18 N 1.31561 * 120.00397 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99987 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47208 * 89.99499 * 19 17 15 21 21 H 1.48496 * 109.46950 * 209.99936 * 19 17 15 22 22 H 1.48504 * 109.46754 * 329.99597 * 19 17 15 23 23 C 1.38882 * 119.86146 * 0.27639 * 13 12 11 24 24 C 1.38102 * 119.92847 * 359.44813 * 23 13 12 25 25 H 1.09000 * 109.47286 * 299.89094 * 1 2 3 26 26 H 1.09002 * 109.46746 * 59.89241 * 1 2 3 27 27 H 1.09003 * 109.47190 * 179.89057 * 1 2 3 28 28 H 1.09007 * 109.46968 * 185.06105 * 3 2 1 29 29 H 1.08998 * 109.47203 * 305.06097 * 3 2 1 30 30 H 1.09000 * 109.47538 * 65.06294 * 3 2 1 31 31 H 1.08994 * 109.50717 * 63.28182 * 4 2 1 32 32 H 1.09007 * 109.50502 * 303.15565 * 4 2 1 33 33 H 1.09000 * 109.50946 * 181.39720 * 6 5 4 34 34 H 1.09001 * 109.50176 * 61.26258 * 6 5 4 35 35 H 1.09004 * 109.50818 * 296.91434 * 7 6 5 36 36 H 1.09000 * 109.50634 * 176.77765 * 7 6 5 37 37 H 1.08995 * 109.46979 * 51.07609 * 9 8 2 38 38 H 1.09000 * 109.46911 * 291.07674 * 9 8 2 39 39 H 1.07996 * 119.96498 * 0.02562 * 11 10 9 40 40 H 1.07997 * 120.03469 * 179.97438 * 12 11 10 41 41 H 0.96995 * 119.99907 * 179.97438 * 18 17 15 42 42 H 1.07997 * 120.03403 * 179.72038 * 23 13 12 43 43 H 1.07998 * 119.96670 * 180.27187 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0418 1.4418 0.0000 4 6 2.0413 -0.7240 -1.2484 5 8 3.4694 -0.7869 -1.2055 6 6 3.9819 -1.4580 -0.0513 7 6 3.4903 -0.7414 1.2092 8 7 2.0208 -0.6952 1.1988 9 6 1.5054 -0.0644 2.4213 10 6 1.8446 -0.9241 3.6116 11 6 2.9791 -0.6557 4.3557 12 6 3.2930 -1.4420 5.4467 13 6 2.4678 -2.5028 5.7968 14 8 2.7734 -3.2773 6.8690 15 6 3.8253 -2.8945 7.6207 16 1 4.4317 -2.0555 7.3132 17 6 4.1283 -3.5782 8.7882 18 7 3.3892 -4.6000 9.1630 19 14 5.5853 -3.0475 9.8300 20 1 5.1401 -2.0421 10.8280 21 1 6.1470 -4.2284 10.5335 22 1 6.6270 -2.4501 8.9562 23 6 1.3321 -2.7729 5.0444 24 6 1.0206 -1.9795 3.9579 25 1 -0.3634 0.5121 0.8910 26 1 -0.3633 0.5155 -0.8891 27 1 -0.3634 -1.0277 -0.0020 28 1 3.1281 1.4418 -0.0907 29 1 1.6070 1.9817 -0.8412 30 1 1.7550 1.9292 0.9318 31 1 1.7275 -0.1797 -2.1390 32 1 1.6331 -1.7344 -1.2759 33 1 5.0715 -1.4443 -0.0761 34 1 3.6301 -2.4896 -0.0441 35 1 3.8862 0.2740 1.2285 36 1 3.8311 -1.2826 2.0918 37 1 0.4232 0.0421 2.3466 38 1 1.9598 0.9190 2.5421 39 1 3.6202 0.1695 4.0833 40 1 4.1792 -1.2323 6.0272 41 1 3.6015 -5.0784 9.9796 42 1 0.6909 -3.5999 5.3114 43 1 0.1352 -2.1863 3.3750 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264080364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:15 Heat of formation + Delta-G solvation = -58.327604 kcal Electronic energy + Delta-G solvation = -23615.214468 eV Core-core repulsion = 20239.529232 eV Total energy + Delta-G solvation = -3375.685235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.40249 -40.59897 -38.49526 -36.97036 -34.47535 -34.00667 -31.78462 -31.70896 -29.06327 -28.24391 -27.79700 -27.27974 -24.90901 -23.80855 -23.26907 -21.97995 -19.84694 -19.61932 -18.80853 -17.51974 -17.27916 -16.75284 -16.45763 -16.27960 -15.92678 -15.65051 -15.51600 -15.41721 -14.90912 -14.74954 -14.49469 -14.31305 -13.93254 -13.74236 -13.49766 -13.25154 -12.91434 -12.79664 -12.70870 -12.45152 -12.41021 -12.36558 -12.13082 -12.09263 -12.04286 -11.67842 -11.33859 -11.17076 -10.79473 -10.49896 -9.76124 -9.25002 -8.87660 -8.47284 -6.15459 0.60686 0.67991 1.34453 1.43680 1.51846 2.17395 2.68646 2.92557 3.00306 3.25542 3.53250 3.77829 3.88669 3.99941 4.01686 4.10622 4.18590 4.23468 4.27705 4.40927 4.48569 4.59577 4.64063 4.69172 4.74990 4.77296 4.79680 4.88220 4.89571 4.98062 5.02049 5.06425 5.09278 5.15402 5.28323 5.30912 5.41450 5.58770 5.71781 5.79485 6.02892 6.07900 6.13575 6.21842 6.27150 6.97533 7.78937 8.76077 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029037 B = 0.003360 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.050644 B = 8331.042475 C = 8675.302309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.068 3.932 3 C -0.172 4.172 4 C 0.072 3.928 5 O -0.397 6.397 6 C 0.065 3.935 7 C 0.018 3.982 8 N -0.528 5.528 9 C 0.112 3.888 10 C -0.152 4.152 11 C -0.062 4.062 12 C -0.242 4.242 13 C 0.114 3.886 14 O -0.233 6.233 15 C -0.414 4.414 16 H 0.101 0.899 17 C -0.023 4.023 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.253 1.253 23 C -0.205 4.205 24 C -0.045 4.045 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.114 0.886 32 H 0.055 0.945 33 H 0.107 0.893 34 H 0.052 0.948 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.045 0.955 39 H 0.131 0.869 40 H 0.116 0.884 41 H 0.273 0.727 42 H 0.111 0.889 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.855 12.086 -19.662 23.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 C -0.231 4.231 4 C -0.005 4.005 5 O -0.315 6.315 6 C -0.012 4.012 7 C -0.110 4.110 8 N -0.253 5.253 9 C -0.015 4.015 10 C -0.153 4.153 11 C -0.080 4.080 12 C -0.261 4.261 13 C 0.064 3.936 14 O -0.140 6.140 15 C -0.490 4.490 16 H 0.118 0.882 17 C -0.220 4.220 18 N -0.559 5.559 19 Si 0.837 3.163 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.177 1.177 23 C -0.224 4.224 24 C -0.063 4.063 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.132 0.868 32 H 0.073 0.927 33 H 0.125 0.875 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.063 0.937 39 H 0.149 0.851 40 H 0.134 0.866 41 H 0.082 0.918 42 H 0.129 0.871 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.031 11.328 -19.593 22.834 hybrid contribution 0.844 0.387 1.309 1.605 sum -2.187 11.716 -18.284 21.826 Atomic orbital electron populations 1.21866 0.91731 1.02900 1.03095 1.21840 0.96983 0.92605 0.90766 1.22345 1.01464 0.96508 1.02737 1.22831 0.80199 1.00206 0.97279 1.87934 1.21686 1.78490 1.43438 1.22679 0.99518 0.95256 0.83722 1.22747 0.88667 1.00143 0.99458 1.62453 1.08154 1.53022 1.01660 1.20907 1.01148 0.93544 0.85890 1.19552 0.96911 0.99776 0.99046 1.20888 0.96251 0.97780 0.93125 1.21189 1.02649 0.99830 1.02420 1.19931 0.94333 0.90831 0.88489 1.83943 1.47678 1.47353 1.35040 1.21808 1.05692 1.17106 1.04355 0.88192 1.26579 1.02269 0.95605 0.97557 1.70185 1.40618 1.20656 1.24478 0.84599 0.75902 0.78174 0.77618 1.18817 1.19562 1.17662 1.20460 0.97669 1.04494 0.99823 1.20789 0.99084 0.92794 0.93631 0.91744 0.90141 0.91940 0.93095 0.90599 0.92438 0.86798 0.92670 0.87472 0.92955 0.93711 0.90742 0.88411 0.93710 0.85123 0.86579 0.91847 0.87095 0.83864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.20 71.98 0.59 -1.31 16 2 C 0.07 1.17 0.68 3.54 0.00 1.17 16 3 C -0.17 -2.79 7.71 71.98 0.56 -2.24 16 4 C 0.07 1.25 5.70 72.02 0.41 1.66 16 5 O -0.40 -8.66 10.20 -148.98 -1.52 -10.18 16 6 C 0.07 1.40 7.01 72.02 0.50 1.90 16 7 C 0.02 0.42 4.93 86.31 0.43 0.84 16 8 N -0.53 -11.68 4.49 -850.25 -3.82 -15.49 16 9 C 0.11 2.55 4.27 85.56 0.37 2.92 16 10 C -0.15 -4.65 4.70 -19.83 -0.09 -4.75 16 11 C -0.06 -2.11 8.29 22.25 0.18 -1.93 16 12 C -0.24 -10.52 9.17 22.39 0.21 -10.32 16 13 C 0.11 5.74 6.65 22.58 0.15 5.89 16 14 O -0.23 -14.20 9.76 -22.75 -0.22 -14.43 16 15 C -0.41 -24.28 9.49 67.92 0.64 -23.64 16 16 H 0.10 5.39 5.20 -2.91 -0.02 5.38 16 17 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 18 N -0.92 -56.95 13.67 21.61 0.30 -56.66 16 19 Si 1.02 43.06 29.55 68.60 2.03 45.08 16 20 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 22 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 23 C -0.21 -8.81 9.99 22.39 0.22 -8.58 16 24 C -0.04 -1.50 9.71 22.25 0.22 -1.28 16 25 H 0.06 0.88 6.18 -2.39 -0.01 0.87 16 26 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 0.97 6.20 -2.38 -0.01 0.96 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 0.94 6.42 -2.39 -0.02 0.93 16 31 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 33 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.04 1.01 6.50 -2.39 -0.02 0.99 16 36 H 0.07 2.02 6.27 -2.39 -0.01 2.01 16 37 H 0.10 1.96 5.78 -2.39 -0.01 1.95 16 38 H 0.04 0.98 6.64 -2.39 -0.02 0.96 16 39 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 40 H 0.12 5.17 5.64 -2.91 -0.02 5.16 16 41 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 43 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -69.84 335.31 2.63 -67.22 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 1.01 Total: 24.94 kcal Atomic # 6 Polarization: -45.33 SS G_CDS: 4.85 Total: -40.48 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -3.52 Total: -72.15 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -1.74 Total: -24.61 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -69.84 2.63 -67.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264080364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.889 kcal (2) G-P(sol) polarization free energy of solvation -69.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds