Wall clock time and date at job start Tue Mar 31 2020 06:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38291 * 119.94217 * 2 1 4 4 C 1.38122 * 120.05211 * 179.74852 * 3 2 1 5 5 C 1.38754 * 119.94637 * 0.50285 * 4 3 2 6 6 O 1.35899 * 120.05804 * 179.74634 * 5 4 3 7 7 C 1.42903 * 116.99858 * 359.72549 * 6 5 4 8 8 C 1.50699 * 109.47132 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99799 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99910 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00033 * 0.02562 * 10 8 7 12 12 C 1.46497 * 119.99894 * 180.02562 * 10 8 7 13 13 H 1.09007 * 109.47078 * 359.97438 * 12 10 8 14 14 C 1.53000 * 109.47021 * 240.00308 * 12 10 8 15 15 C 1.50694 * 109.47115 * 120.00089 * 12 10 8 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 10 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.38712 * 119.88605 * 359.47663 * 5 4 3 24 24 C 1.38164 * 119.94498 * 0.26984 * 23 5 4 25 25 C 1.50698 * 119.97409 * 180.02562 * 24 23 5 26 26 H 1.09002 * 109.46843 * 270.02508 * 1 2 3 27 27 H 1.08993 * 109.46903 * 30.01950 * 1 2 3 28 28 H 1.09001 * 109.46840 * 150.02434 * 1 2 3 29 29 H 1.08000 * 119.96976 * 359.97438 * 3 2 1 30 30 H 1.08003 * 120.02666 * 180.27691 * 4 3 2 31 31 H 1.09005 * 109.46887 * 60.00427 * 7 6 5 32 32 H 1.09000 * 109.47562 * 300.00525 * 7 6 5 33 33 H 1.09001 * 109.46905 * 269.99961 * 11 10 8 34 34 H 1.09005 * 109.47144 * 29.99902 * 11 10 8 35 35 H 1.08993 * 109.47302 * 150.00089 * 11 10 8 36 36 H 1.08995 * 109.47131 * 179.97438 * 14 12 10 37 37 H 1.09002 * 109.47106 * 299.99878 * 14 12 10 38 38 H 1.08998 * 109.47089 * 59.99825 * 14 12 10 39 39 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.02732 * 180.29843 * 23 5 4 41 41 H 1.09001 * 109.47493 * 89.99760 * 25 24 23 42 42 H 1.08998 * 109.47310 * 210.00541 * 25 24 23 43 43 H 1.09001 * 109.46660 * 329.99961 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 0.0052 5 6 4.2735 0.0001 0.0000 6 8 5.6325 0.0001 -0.0001 7 6 6.2812 1.2733 -0.0007 8 6 7.7752 1.0759 0.0000 9 8 8.2388 -0.0448 0.0004 10 7 8.5962 2.1448 0.0001 11 6 8.0362 3.4986 0.0002 12 6 10.0486 1.9529 0.0002 13 1 10.2742 0.8864 0.0006 14 6 10.6486 2.6010 1.2496 15 6 10.6397 2.5915 -1.2301 16 1 9.9978 3.0901 -1.9413 17 6 12.0001 2.5383 -1.4485 18 7 12.7818 1.9308 -0.5828 19 14 12.7327 3.3293 -2.9739 20 1 14.2050 3.1349 -2.9738 21 1 12.1500 2.7002 -4.1862 22 1 12.4258 4.7822 -2.9741 23 6 3.5788 -1.2005 0.0004 24 6 2.1971 -1.1979 0.0005 25 6 1.4417 -2.5018 0.0015 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6559 2.1328 -0.0004 30 1 4.1172 2.1371 0.0098 31 1 5.9884 1.8307 0.8892 32 1 5.9883 1.8301 -0.8908 33 1 7.8974 3.8344 -1.0274 34 1 7.0749 3.4941 0.5140 35 1 8.7197 4.1744 0.5141 36 1 11.7291 2.4578 1.2499 37 1 10.4230 3.6674 1.2497 38 1 10.2210 2.1391 2.1394 39 1 13.7388 1.8931 -0.7366 40 1 4.1174 -2.1366 0.0012 41 1 1.2596 -2.8155 1.0295 42 1 0.4895 -2.3706 -0.5124 43 1 2.0297 -3.2627 -0.5117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264101745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:52 Heat of formation + Delta-G solvation = -51.071881 kcal Electronic energy + Delta-G solvation = -22808.560123 eV Core-core repulsion = 19433.189519 eV Total energy + Delta-G solvation = -3375.370604 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38518 -39.11689 -37.68255 -35.34240 -32.95947 -32.78582 -32.11546 -30.05474 -28.34508 -26.97006 -26.17774 -25.98897 -25.22267 -22.39740 -21.56078 -20.41178 -18.50918 -17.95042 -16.74151 -16.33587 -16.06204 -15.84491 -15.39624 -15.15156 -14.53765 -14.46362 -14.12516 -14.00759 -13.48457 -13.24866 -12.99464 -12.75650 -12.65347 -12.53088 -12.20387 -12.12515 -11.92845 -11.58867 -11.58464 -11.37905 -11.08508 -10.88940 -10.86163 -10.77930 -10.69283 -10.28851 -10.18986 -9.23220 -8.99757 -8.88795 -8.44985 -8.06731 -7.68264 -6.09506 -4.17937 1.22028 1.35051 2.92941 3.22263 3.26967 3.32169 3.34696 3.62381 4.07436 4.38240 4.64222 4.65417 4.85064 4.91275 4.99021 5.06554 5.12805 5.21490 5.22140 5.23453 5.30877 5.46396 5.56265 5.59920 5.61577 5.64517 5.85126 5.96528 5.98763 6.20735 6.23865 6.31030 6.53045 6.68946 6.73311 6.78007 7.00650 7.30539 7.42533 7.50175 7.67613 7.97878 8.14736 8.42680 8.78421 8.95393 9.48454 10.95893 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032094 B = 0.002883 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.226637 B = 9708.570703 C = 9826.899367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.134 4.134 3 C -0.076 4.076 4 C -0.214 4.214 5 C 0.135 3.865 6 O -0.287 6.287 7 C 0.043 3.957 8 C 0.505 3.495 9 O -0.529 6.529 10 N -0.590 5.590 11 C 0.082 3.918 12 C 0.259 3.741 13 H 0.065 0.935 14 C -0.147 4.147 15 C -0.528 4.528 16 H 0.059 0.941 17 C 0.065 3.935 18 N -0.887 5.887 19 Si 0.900 3.100 20 H -0.286 1.286 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.149 4.149 24 C -0.049 4.049 25 C -0.117 4.117 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.031 0.969 38 H 0.012 0.988 39 H 0.264 0.736 40 H 0.132 0.868 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.516 0.081 2.545 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.134 4.134 3 C -0.094 4.094 4 C -0.233 4.233 5 C 0.089 3.911 6 O -0.199 6.199 7 C -0.036 4.036 8 C 0.290 3.710 9 O -0.406 6.406 10 N -0.323 5.323 11 C -0.061 4.061 12 C 0.160 3.840 13 H 0.083 0.917 14 C -0.206 4.206 15 C -0.566 4.566 16 H 0.077 0.923 17 C -0.138 4.138 18 N -0.525 5.525 19 Si 0.728 3.272 20 H -0.211 1.211 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.168 4.168 24 C -0.049 4.049 25 C -0.174 4.174 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.141 0.859 30 H 0.146 0.854 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.050 0.950 38 H 0.031 0.969 39 H 0.074 0.926 40 H 0.150 0.850 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.892 -0.721 2.581 22.055 hybrid contribution 0.484 0.990 -0.843 1.387 sum -21.408 0.269 1.738 21.480 Atomic orbital electron populations 1.20760 0.91346 1.02520 1.01977 1.19623 0.95967 0.92534 1.05280 1.20768 0.93211 0.97495 0.97930 1.21260 0.95393 0.97119 1.09498 1.19098 0.82508 0.94191 0.95316 1.86195 1.15652 1.30160 1.87933 1.22668 0.92966 0.85010 1.02919 1.19786 0.86844 0.85751 0.78592 1.90699 1.76893 1.23464 1.49524 1.48190 1.08995 1.04318 1.70788 1.21627 0.97819 0.85343 1.01357 1.18990 0.71753 0.99059 0.94232 0.91749 1.22105 1.04636 0.98114 0.95737 1.21264 0.92359 1.36632 1.06390 0.92274 1.24898 0.96913 0.95188 0.96764 1.69868 1.04833 1.42514 1.35326 0.86529 0.77977 0.79598 0.83127 1.21132 1.20210 1.20228 1.20301 0.92977 0.96610 1.06910 1.19507 0.92455 0.95097 0.97836 1.20871 1.00012 0.93940 1.02527 0.91599 0.91941 0.91410 0.85910 0.85413 0.89645 0.89511 0.92943 0.93156 0.90367 0.88647 0.95011 0.96866 0.92555 0.85037 0.90925 0.91006 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.60 36.01 0.35 -0.44 16 2 C -0.13 -1.37 5.88 -104.60 -0.62 -1.99 16 3 C -0.08 -0.80 9.69 -39.60 -0.38 -1.18 16 4 C -0.21 -2.59 9.04 -39.43 -0.36 -2.95 16 5 C 0.13 1.97 6.69 -39.22 -0.26 1.71 16 6 O -0.29 -5.04 9.67 -39.33 -0.38 -5.42 16 7 C 0.04 0.68 3.77 36.01 0.14 0.82 16 8 C 0.51 10.77 7.75 -10.98 -0.09 10.68 16 9 O -0.53 -13.79 15.83 -14.35 -0.23 -14.01 16 10 N -0.59 -12.50 2.75 -175.27 -0.48 -12.98 16 11 C 0.08 1.31 9.48 59.85 0.57 1.88 16 12 C 0.26 6.63 2.63 -69.09 -0.18 6.44 16 13 H 0.06 1.92 6.90 -51.92 -0.36 1.56 16 14 C -0.15 -3.49 8.95 37.16 0.33 -3.16 16 15 C -0.53 -14.22 8.37 -34.44 -0.29 -14.51 16 16 H 0.06 1.56 7.65 -52.49 -0.40 1.16 16 17 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.09 11.32 55.43 0.63 -24.46 16 19 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 C -0.15 -1.98 9.64 -39.43 -0.38 -2.36 16 24 C -0.05 -0.54 5.88 -104.65 -0.62 -1.15 16 25 C -0.12 -0.93 9.60 36.00 0.35 -0.58 16 26 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.07 0.42 5.94 -51.93 -0.31 0.11 16 29 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.13 1.32 6.30 -52.48 -0.33 0.99 16 31 H 0.09 1.10 6.91 -51.93 -0.36 0.74 16 32 H 0.09 1.17 7.64 -51.93 -0.40 0.77 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.60 6.44 -51.93 -0.33 0.27 16 35 H 0.08 1.26 6.43 -51.93 -0.33 0.92 16 36 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 37 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 38 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.46 5.94 -51.93 -0.31 0.16 16 43 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 LS Contribution 348.75 15.07 5.26 5.26 Total: -1.00 -32.68 348.75 -8.07 -40.75 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.30 Total: 0.02 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -1.54 Total: -5.12 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.15 Total: -37.44 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.61 Total: -19.44 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.68 -8.07 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264101745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.322 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds