Wall clock time and date at job start Tue Mar 31 2020 06:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38291 * 119.94217 * 2 1 4 4 C 1.38122 * 120.05211 * 179.74852 * 3 2 1 5 5 C 1.38754 * 119.94637 * 0.50285 * 4 3 2 6 6 O 1.35899 * 120.05804 * 179.74634 * 5 4 3 7 7 C 1.42903 * 116.99858 * 359.72549 * 6 5 4 8 8 C 1.50699 * 109.47132 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99799 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99910 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00033 * 0.02562 * 10 8 7 12 12 C 1.46497 * 119.99894 * 180.02562 * 10 8 7 13 13 H 1.09007 * 109.47078 * 359.97438 * 12 10 8 14 14 C 1.53000 * 109.47021 * 240.00308 * 12 10 8 15 15 C 1.50694 * 109.47115 * 120.00089 * 12 10 8 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 12 10 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 12 10 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.38712 * 119.88605 * 359.47663 * 5 4 3 24 24 C 1.38164 * 119.94498 * 0.26984 * 23 5 4 25 25 C 1.50698 * 119.97409 * 180.02562 * 24 23 5 26 26 H 1.09002 * 109.46843 * 270.02508 * 1 2 3 27 27 H 1.08993 * 109.46903 * 30.01950 * 1 2 3 28 28 H 1.09001 * 109.46840 * 150.02434 * 1 2 3 29 29 H 1.08000 * 119.96976 * 359.97438 * 3 2 1 30 30 H 1.08003 * 120.02666 * 180.27691 * 4 3 2 31 31 H 1.09005 * 109.46887 * 60.00427 * 7 6 5 32 32 H 1.09000 * 109.47562 * 300.00525 * 7 6 5 33 33 H 1.09001 * 109.46905 * 269.99961 * 11 10 8 34 34 H 1.09005 * 109.47144 * 29.99902 * 11 10 8 35 35 H 1.08993 * 109.47302 * 150.00089 * 11 10 8 36 36 H 1.08995 * 109.47131 * 179.97438 * 14 12 10 37 37 H 1.09002 * 109.47106 * 299.99878 * 14 12 10 38 38 H 1.08998 * 109.47089 * 59.99825 * 14 12 10 39 39 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 40 40 H 1.08001 * 120.02732 * 180.29843 * 23 5 4 41 41 H 1.09001 * 109.47493 * 89.99760 * 25 24 23 42 42 H 1.08998 * 109.47310 * 210.00541 * 25 24 23 43 43 H 1.09001 * 109.46660 * 329.99961 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2010 0.0052 5 6 4.2735 0.0001 0.0000 6 8 5.6325 0.0001 -0.0001 7 6 6.2812 1.2733 -0.0007 8 6 7.7752 1.0759 0.0000 9 8 8.2388 -0.0448 0.0004 10 7 8.5962 2.1448 0.0001 11 6 8.0362 3.4986 0.0002 12 6 10.0486 1.9529 0.0002 13 1 10.2742 0.8864 0.0006 14 6 10.6486 2.6010 1.2496 15 6 10.6397 2.5915 -1.2301 16 1 9.9978 3.0901 -1.9413 17 6 12.0001 2.5383 -1.4485 18 7 12.7818 1.9308 -0.5828 19 14 12.7327 3.3293 -2.9739 20 1 14.2050 3.1349 -2.9738 21 1 12.1500 2.7002 -4.1862 22 1 12.4258 4.7822 -2.9741 23 6 3.5788 -1.2005 0.0004 24 6 2.1971 -1.1979 0.0005 25 6 1.4417 -2.5018 0.0015 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5141 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6559 2.1328 -0.0004 30 1 4.1172 2.1371 0.0098 31 1 5.9884 1.8307 0.8892 32 1 5.9883 1.8301 -0.8908 33 1 7.8974 3.8344 -1.0274 34 1 7.0749 3.4941 0.5140 35 1 8.7197 4.1744 0.5141 36 1 11.7291 2.4578 1.2499 37 1 10.4230 3.6674 1.2497 38 1 10.2210 2.1391 2.1394 39 1 13.7388 1.8931 -0.7366 40 1 4.1174 -2.1366 0.0012 41 1 1.2596 -2.8155 1.0295 42 1 0.4895 -2.3706 -0.5124 43 1 2.0297 -3.2627 -0.5117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264101745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:51 Heat of formation + Delta-G solvation = -69.889937 kcal Electronic energy + Delta-G solvation = -22809.376135 eV Core-core repulsion = 19433.189519 eV Total energy + Delta-G solvation = -3376.186616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.50052 -40.54750 -38.81176 -37.15488 -34.88471 -33.59495 -32.97285 -31.81965 -29.52077 -27.96700 -27.60643 -27.27615 -26.78003 -23.47712 -22.96927 -21.53837 -20.09859 -19.08249 -18.54808 -17.68181 -17.42946 -17.39069 -16.76018 -16.26282 -15.95540 -15.76202 -15.15708 -14.96397 -14.74871 -14.49058 -14.25611 -14.03737 -13.73118 -13.54349 -13.49262 -13.15485 -13.09947 -12.93395 -12.89890 -12.73702 -12.71550 -12.64337 -12.19527 -12.14138 -12.08247 -11.72988 -11.70887 -11.22205 -10.73723 -10.51286 -9.74160 -9.42567 -8.98263 -8.16365 -6.33484 0.36785 0.45677 1.40669 1.43660 1.50508 1.60721 1.67955 2.39313 2.71709 2.75828 3.11740 3.49851 3.83514 3.91038 3.95446 4.06037 4.12320 4.29078 4.35785 4.40641 4.44330 4.66660 4.75411 4.76430 4.81854 4.85518 4.86781 4.97516 5.00779 5.03752 5.04434 5.21792 5.24093 5.41380 5.42761 5.45305 5.56070 5.63031 5.74362 5.90037 6.00372 6.12600 6.40832 6.70683 6.74260 7.23309 7.40751 8.88139 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032094 B = 0.002883 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.226637 B = 9708.570703 C = 9826.899367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.134 4.134 3 C -0.078 4.078 4 C -0.216 4.216 5 C 0.102 3.898 6 O -0.326 6.326 7 C 0.058 3.942 8 C 0.493 3.507 9 O -0.594 6.594 10 N -0.594 5.594 11 C 0.075 3.925 12 C 0.261 3.739 13 H 0.006 0.994 14 C -0.133 4.133 15 C -0.540 4.540 16 H 0.063 0.937 17 C 0.014 3.986 18 N -0.918 5.918 19 Si 0.967 3.033 20 H -0.284 1.284 21 H -0.278 1.278 22 H -0.260 1.260 23 C -0.174 4.174 24 C -0.055 4.055 25 C -0.117 4.117 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.020 0.980 39 H 0.265 0.735 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.743 2.573 2.070 25.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.134 4.134 3 C -0.096 4.096 4 C -0.234 4.234 5 C 0.058 3.942 6 O -0.239 6.239 7 C -0.020 4.020 8 C 0.280 3.720 9 O -0.475 6.475 10 N -0.326 5.326 11 C -0.067 4.067 12 C 0.159 3.841 13 H 0.024 0.976 14 C -0.191 4.191 15 C -0.579 4.579 16 H 0.082 0.918 17 C -0.186 4.186 18 N -0.557 5.557 19 Si 0.792 3.208 20 H -0.210 1.210 21 H -0.204 1.204 22 H -0.184 1.184 23 C -0.193 4.193 24 C -0.055 4.055 25 C -0.173 4.173 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.171 0.829 30 H 0.166 0.834 31 H 0.140 0.860 32 H 0.134 0.866 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.137 0.863 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -25.165 1.819 2.112 25.319 hybrid contribution 1.379 0.160 -0.672 1.542 sum -23.786 1.979 1.440 23.911 Atomic orbital electron populations 1.20837 0.88847 1.03784 1.03040 1.20094 0.97829 0.92090 1.03371 1.21184 0.92749 0.98920 0.96736 1.21503 0.96256 0.96750 1.08928 1.19367 0.81318 0.95712 0.97849 1.86129 1.17640 1.31147 1.89017 1.22574 0.88375 0.85203 1.05838 1.20822 0.89419 0.84684 0.77029 1.90660 1.78525 1.25994 1.52332 1.48174 1.07470 1.06726 1.70184 1.21972 0.99802 0.82096 1.02815 1.18590 0.74976 0.95619 0.94904 0.97634 1.21885 1.02730 0.99308 0.95216 1.21545 0.92794 1.36575 1.06977 0.91842 1.25772 0.97417 0.95679 0.99711 1.70023 1.05007 1.43573 1.37096 0.85479 0.76972 0.79387 0.78997 1.20957 1.20378 1.18395 1.20482 0.94284 0.96153 1.08354 1.19855 0.91613 0.96979 0.97090 1.20941 1.00447 0.92470 1.03420 0.90479 0.90563 0.90363 0.82896 0.83445 0.86022 0.86638 0.91895 0.88304 0.90460 0.91314 0.92804 0.96072 0.92584 0.86344 0.89931 0.89022 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.60 71.24 0.68 -0.46 16 2 C -0.13 -2.36 5.88 -19.85 -0.12 -2.48 16 3 C -0.08 -1.38 9.69 22.25 0.22 -1.17 16 4 C -0.22 -4.70 9.04 22.37 0.20 -4.50 16 5 C 0.10 2.96 6.69 22.51 0.15 3.11 16 6 O -0.33 -11.64 9.67 -73.37 -0.71 -12.35 16 7 C 0.06 1.75 3.77 71.24 0.27 2.02 16 8 C 0.49 21.40 7.75 87.66 0.68 22.08 16 9 O -0.59 -32.95 15.83 16.01 0.25 -32.70 16 10 N -0.59 -25.14 2.75 -826.81 -2.28 -27.42 16 11 C 0.07 2.18 9.48 127.77 1.21 3.39 16 12 C 0.26 13.78 2.63 44.24 0.12 13.90 16 13 H 0.01 0.36 6.90 -2.38 -0.02 0.35 16 14 C -0.13 -6.41 8.95 71.98 0.64 -5.77 16 15 C -0.54 -29.52 8.37 25.60 0.21 -29.31 16 16 H 0.06 3.32 7.65 -2.91 -0.02 3.30 16 17 C 0.01 0.76 5.30 84.66 0.45 1.21 16 18 N -0.92 -53.50 11.32 21.45 0.24 -53.25 16 19 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 23 C -0.17 -4.73 9.64 22.37 0.22 -4.51 16 24 C -0.06 -1.15 5.88 -19.88 -0.12 -1.26 16 25 C -0.12 -1.66 9.60 71.24 0.68 -0.98 16 26 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.08 0.62 8.08 -2.39 -0.02 0.60 16 28 H 0.08 0.67 5.94 -2.39 -0.01 0.66 16 29 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.15 2.47 6.30 -2.91 -0.02 2.46 16 31 H 0.12 2.74 6.91 -2.38 -0.02 2.72 16 32 H 0.12 2.80 7.64 -2.39 -0.02 2.78 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.10 1.91 6.44 -2.38 -0.02 1.90 16 35 H 0.08 2.28 6.43 -2.39 -0.02 2.26 16 36 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 37 H 0.05 2.30 6.66 -2.39 -0.02 2.28 16 38 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.27 14.65 8.31 -92.71 -0.77 13.87 16 40 H 0.12 3.33 8.06 -2.91 -0.02 3.31 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.09 0.93 5.94 -2.39 -0.01 0.91 16 43 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 Total: -1.00 -76.87 348.75 6.05 -70.83 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 1.01 Total: 14.45 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 5.50 Total: -4.72 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -2.03 Total: -80.67 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -0.46 Total: -45.05 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -76.87 6.05 -70.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264101745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.937 kcal (2) G-P(sol) polarization free energy of solvation -76.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds