Wall clock time and date at job start Tue Mar 31 2020 06:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 120.02996 * 2 1 4 4 C 1.38274 * 120.05552 * 179.70225 * 3 2 1 5 5 C 1.38261 * 120.10990 * 0.30244 * 4 3 2 6 6 C 1.38149 * 120.05703 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.02698 * 180.02562 * 6 5 4 8 8 C 1.38729 * 119.94477 * 359.97438 * 6 5 4 9 9 O 1.35897 * 120.05793 * 180.02562 * 8 6 5 10 10 C 1.42904 * 116.99870 * 90.00223 * 9 8 6 11 11 C 1.50694 * 109.47281 * 179.97438 * 10 9 8 12 12 O 1.21282 * 119.99886 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00247 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00192 * 0.02562 * 13 11 10 15 15 C 1.46501 * 120.00501 * 180.02562 * 13 11 10 16 16 H 1.09006 * 109.46875 * 0.02562 * 15 13 11 17 17 C 1.53002 * 109.47059 * 119.99749 * 15 13 11 18 18 C 1.50695 * 109.47424 * 240.00063 * 15 13 11 19 19 H 1.08005 * 119.99739 * 359.97438 * 18 15 13 20 20 C 1.37873 * 120.00128 * 179.97438 * 18 15 13 21 21 N 1.31514 * 120.00125 * 180.02562 * 20 18 15 22 22 Si 1.86800 * 120.00023 * 0.02562 * 20 18 15 23 23 H 1.48500 * 109.47367 * 89.99460 * 22 20 18 24 24 H 1.48500 * 109.47292 * 209.99390 * 22 20 18 25 25 H 1.48501 * 109.46938 * 329.99328 * 22 20 18 26 26 H 1.09000 * 109.47072 * 89.98949 * 1 2 3 27 27 H 1.08998 * 109.47473 * 209.99832 * 1 2 3 28 28 H 1.09000 * 109.46857 * 329.99816 * 1 2 3 29 29 H 1.08002 * 119.97550 * 359.97438 * 3 2 1 30 30 H 1.07998 * 119.94363 * 180.27764 * 4 3 2 31 31 H 1.07996 * 119.97484 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47189 * 89.99754 * 7 6 5 33 33 H 1.09006 * 109.46628 * 209.99786 * 7 6 5 34 34 H 1.09001 * 109.47332 * 329.99143 * 7 6 5 35 35 H 1.08998 * 109.47029 * 300.00379 * 10 9 8 36 36 H 1.08998 * 109.47170 * 59.99852 * 10 9 8 37 37 H 1.09005 * 109.47063 * 89.99219 * 14 13 11 38 38 H 1.08995 * 109.47686 * 209.99969 * 14 13 11 39 39 H 1.09005 * 109.46979 * 330.00473 * 14 13 11 40 40 H 1.09006 * 109.46771 * 60.00555 * 17 15 13 41 41 H 1.09004 * 109.46796 * 180.02562 * 17 15 13 42 42 H 1.08999 * 109.47668 * 300.00213 * 17 15 13 43 43 H 0.96999 * 119.99946 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2752 0.0009 0.0061 6 6 3.5885 -1.1979 0.0004 7 6 4.3458 -2.5008 0.0009 8 6 2.2012 -1.2012 -0.0048 9 8 1.5234 -2.3790 -0.0099 10 6 1.1951 -2.9441 1.2609 11 6 0.4501 -4.2382 1.0578 12 8 0.2231 -4.6376 -0.0646 13 7 0.0369 -4.9523 2.1235 14 6 0.3116 -4.4703 3.4795 15 6 -0.6868 -6.2107 1.9262 16 1 -0.7953 -6.4039 0.8589 17 6 0.0945 -7.3554 2.5744 18 6 -2.0502 -6.1108 2.5603 19 1 -2.3478 -5.2011 3.0606 20 6 -2.9178 -7.1808 2.5016 21 7 -4.1079 -7.0934 3.0545 22 14 -2.4030 -8.7545 1.6369 23 1 -1.7435 -9.6614 2.6105 24 1 -3.6019 -9.4234 1.0710 25 1 -1.4541 -8.4297 0.5417 26 1 -0.3633 0.0002 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6584 2.1313 -0.0004 30 1 4.1197 2.1327 0.0107 31 1 5.3552 0.0039 0.0106 32 1 4.5238 -2.8172 1.0286 33 1 3.7611 -3.2610 -0.5173 34 1 5.3001 -2.3666 -0.5085 35 1 2.1104 -3.1353 1.8209 36 1 0.5677 -2.2476 1.8171 37 1 -0.5110 -3.8380 3.8139 38 1 0.4137 -5.3205 4.1537 39 1 1.2364 -3.8933 3.4796 40 1 0.2033 -7.1624 3.6417 41 1 -0.4438 -8.2918 2.4272 42 1 1.0807 -7.4278 2.1158 43 1 -4.7181 -7.8463 3.0136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264108812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:54 Heat of formation + Delta-G solvation = -42.276078 kcal Electronic energy + Delta-G solvation = -23543.453451 eV Core-core repulsion = 20168.464262 eV Total energy + Delta-G solvation = -3374.989189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.41110 -39.14952 -37.14670 -35.46731 -33.70540 -32.85772 -31.34992 -30.68651 -28.30446 -26.76044 -26.56361 -26.26798 -25.10981 -22.06336 -21.29858 -21.00459 -18.53790 -17.89411 -16.98625 -16.67517 -16.04875 -15.94043 -15.44177 -15.12138 -14.72281 -14.16125 -14.06168 -13.49822 -13.33732 -13.20599 -13.10931 -12.90583 -12.77345 -12.55294 -12.31314 -12.25176 -12.00149 -11.88515 -11.68142 -11.65838 -11.42018 -11.28095 -11.14098 -10.71041 -10.16137 -9.89404 -9.66794 -9.38193 -9.04736 -8.73601 -8.65699 -8.61846 -7.79990 -6.16550 -4.17567 1.04337 1.17634 3.06732 3.16468 3.22267 3.36435 3.39193 3.59352 4.17948 4.33745 4.63566 4.67996 4.80138 4.95605 5.09724 5.09969 5.17227 5.22747 5.28020 5.37022 5.46606 5.51233 5.57415 5.64272 5.66756 5.69803 5.90980 6.01592 6.14910 6.17647 6.21587 6.28932 6.29076 6.31523 6.44084 6.46095 6.62620 6.80798 7.05467 7.27488 7.52635 7.59779 8.10649 8.42944 8.79948 8.86060 9.44155 10.96119 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028166 B = 0.003681 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.872929 B = 7605.261387 C = 8002.016589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.094 4.094 3 C -0.117 4.117 4 C -0.120 4.120 5 C -0.118 4.118 6 C -0.096 4.096 7 C -0.117 4.117 8 C 0.093 3.907 9 O -0.306 6.306 10 C 0.052 3.948 11 C 0.508 3.492 12 O -0.530 6.530 13 N -0.586 5.586 14 C 0.083 3.917 15 C 0.231 3.769 16 H 0.064 0.936 17 C -0.162 4.162 18 C -0.528 4.528 19 H 0.079 0.921 20 C 0.076 3.924 21 N -0.894 5.894 22 Si 0.883 3.117 23 H -0.277 1.277 24 H -0.293 1.293 25 H -0.263 1.263 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.034 0.966 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.426 14.384 -1.287 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.135 4.135 4 C -0.138 4.138 5 C -0.136 4.136 6 C -0.097 4.097 7 C -0.173 4.173 8 C 0.049 3.951 9 O -0.221 6.221 10 C -0.026 4.026 11 C 0.294 3.706 12 O -0.406 6.406 13 N -0.319 5.319 14 C -0.060 4.060 15 C 0.130 3.870 16 H 0.081 0.919 17 C -0.220 4.220 18 C -0.567 4.567 19 H 0.097 0.903 20 C -0.127 4.127 21 N -0.532 5.532 22 Si 0.712 3.288 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.187 1.187 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 16.050 13.948 -1.996 21.357 hybrid contribution 0.176 -0.697 0.009 0.719 sum 16.227 13.251 -1.987 21.043 Atomic orbital electron populations 1.20745 0.90394 1.02874 1.03049 1.20306 0.96968 0.92433 0.99754 1.20926 0.94158 0.97075 1.01359 1.21123 0.94234 0.97976 1.00444 1.20911 0.99715 0.91468 1.01515 1.20265 0.92999 0.96287 1.00142 1.20752 0.99670 0.94474 1.02413 1.18449 0.89439 0.85189 1.02015 1.86120 1.74397 1.34330 1.27299 1.22529 0.99737 0.94786 0.85544 1.19884 0.80362 0.84937 0.85435 1.90688 1.56528 1.70120 1.23285 1.47806 1.55319 1.23864 1.04869 1.21656 0.99275 1.00439 0.84676 1.19314 0.90582 0.78429 0.98721 0.91857 1.22467 0.98626 0.99624 1.01256 1.21141 0.96612 1.02093 1.36824 0.90319 1.24858 0.94660 0.98511 0.94662 1.69870 1.07245 1.31900 1.44163 0.86923 0.77651 0.83633 0.80556 1.20368 1.22077 1.18743 0.90627 0.91065 0.91513 0.85719 0.85909 0.85794 0.91307 0.90375 0.91435 0.90492 0.90233 0.92512 0.90399 0.92902 0.92468 0.93033 0.94727 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.79 36.01 0.35 -1.00 16 2 C -0.09 -1.17 5.89 -104.47 -0.62 -1.79 16 3 C -0.12 -1.19 9.70 -39.60 -0.38 -1.58 16 4 C -0.12 -1.11 10.04 -39.56 -0.40 -1.51 16 5 C -0.12 -1.17 9.70 -39.61 -0.38 -1.55 16 6 C -0.10 -1.16 5.89 -104.47 -0.62 -1.77 16 7 C -0.12 -1.25 9.79 36.01 0.35 -0.90 16 8 C 0.09 1.30 5.67 -39.22 -0.22 1.08 16 9 O -0.31 -5.07 7.86 -39.33 -0.31 -5.38 16 10 C 0.05 0.79 4.72 36.00 0.17 0.96 16 11 C 0.51 10.31 7.75 -10.99 -0.09 10.22 16 12 O -0.53 -13.08 15.83 -14.35 -0.23 -13.30 16 13 N -0.59 -11.88 2.75 -175.26 -0.48 -12.36 16 14 C 0.08 1.30 9.48 59.85 0.57 1.86 16 15 C 0.23 5.55 2.23 -69.08 -0.15 5.39 16 16 H 0.06 1.71 5.96 -51.93 -0.31 1.40 16 17 C -0.16 -3.43 8.65 37.16 0.32 -3.11 16 18 C -0.53 -14.52 8.95 -34.44 -0.31 -14.83 16 19 H 0.08 2.32 7.89 -52.48 -0.41 1.90 16 20 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 21 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 22 Si 0.88 21.78 24.37 -169.99 -4.14 17.63 16 23 H -0.28 -6.50 6.87 56.52 0.39 -6.11 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.95 6.30 -51.93 -0.33 0.63 16 28 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 29 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 30 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 31 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.00 7.53 -51.93 -0.39 0.61 16 34 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.08 0.98 7.40 -51.93 -0.38 0.59 16 36 H 0.08 1.09 7.20 -51.93 -0.37 0.71 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.20 6.43 -51.93 -0.33 0.86 16 39 H 0.05 0.62 6.44 -51.93 -0.33 0.28 16 40 H 0.06 1.11 6.66 -51.93 -0.35 0.76 16 41 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 345.28 15.07 5.20 5.20 Total: -1.00 -33.55 345.28 -7.05 -40.60 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.36 Total: 0.09 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -1.50 Total: -6.45 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.29 Total: -38.39 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.54 Total: -18.68 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.63 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.55 -7.05 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264108812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.681 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds