Wall clock time and date at job start Tue Mar 31 2020 06:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38141 * 120.02996 * 2 1 4 4 C 1.38274 * 120.05552 * 179.70225 * 3 2 1 5 5 C 1.38261 * 120.10990 * 0.30244 * 4 3 2 6 6 C 1.38149 * 120.05703 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.02698 * 180.02562 * 6 5 4 8 8 C 1.38729 * 119.94477 * 359.97438 * 6 5 4 9 9 O 1.35897 * 120.05793 * 180.02562 * 8 6 5 10 10 C 1.42904 * 116.99870 * 90.00223 * 9 8 6 11 11 C 1.50694 * 109.47281 * 179.97438 * 10 9 8 12 12 O 1.21282 * 119.99886 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00247 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00192 * 0.02562 * 13 11 10 15 15 C 1.46501 * 120.00501 * 180.02562 * 13 11 10 16 16 H 1.09006 * 109.46875 * 0.02562 * 15 13 11 17 17 C 1.53002 * 109.47059 * 119.99749 * 15 13 11 18 18 C 1.50695 * 109.47424 * 240.00063 * 15 13 11 19 19 H 1.08005 * 119.99739 * 359.97438 * 18 15 13 20 20 C 1.37873 * 120.00128 * 179.97438 * 18 15 13 21 21 N 1.31514 * 120.00125 * 180.02562 * 20 18 15 22 22 Si 1.86800 * 120.00023 * 0.02562 * 20 18 15 23 23 H 1.48500 * 109.47367 * 89.99460 * 22 20 18 24 24 H 1.48500 * 109.47292 * 209.99390 * 22 20 18 25 25 H 1.48501 * 109.46938 * 329.99328 * 22 20 18 26 26 H 1.09000 * 109.47072 * 89.98949 * 1 2 3 27 27 H 1.08998 * 109.47473 * 209.99832 * 1 2 3 28 28 H 1.09000 * 109.46857 * 329.99816 * 1 2 3 29 29 H 1.08002 * 119.97550 * 359.97438 * 3 2 1 30 30 H 1.07998 * 119.94363 * 180.27764 * 4 3 2 31 31 H 1.07996 * 119.97484 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.47189 * 89.99754 * 7 6 5 33 33 H 1.09006 * 109.46628 * 209.99786 * 7 6 5 34 34 H 1.09001 * 109.47332 * 329.99143 * 7 6 5 35 35 H 1.08998 * 109.47029 * 300.00379 * 10 9 8 36 36 H 1.08998 * 109.47170 * 59.99852 * 10 9 8 37 37 H 1.09005 * 109.47063 * 89.99219 * 14 13 11 38 38 H 1.08995 * 109.47686 * 209.99969 * 14 13 11 39 39 H 1.09005 * 109.46979 * 330.00473 * 14 13 11 40 40 H 1.09006 * 109.46771 * 60.00555 * 17 15 13 41 41 H 1.09004 * 109.46796 * 180.02562 * 17 15 13 42 42 H 1.08999 * 109.47668 * 300.00213 * 17 15 13 43 43 H 0.96999 * 119.99946 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5811 1.1966 0.0062 5 6 4.2752 0.0009 0.0061 6 6 3.5885 -1.1979 0.0004 7 6 4.3458 -2.5008 0.0009 8 6 2.2012 -1.2012 -0.0048 9 8 1.5234 -2.3790 -0.0099 10 6 1.1951 -2.9441 1.2609 11 6 0.4501 -4.2382 1.0578 12 8 0.2231 -4.6376 -0.0646 13 7 0.0369 -4.9523 2.1235 14 6 0.3116 -4.4703 3.4795 15 6 -0.6868 -6.2107 1.9262 16 1 -0.7953 -6.4039 0.8589 17 6 0.0945 -7.3554 2.5744 18 6 -2.0502 -6.1108 2.5603 19 1 -2.3478 -5.2011 3.0606 20 6 -2.9178 -7.1808 2.5016 21 7 -4.1079 -7.0934 3.0545 22 14 -2.4030 -8.7545 1.6369 23 1 -1.7435 -9.6614 2.6105 24 1 -3.6019 -9.4234 1.0710 25 1 -1.4541 -8.4297 0.5417 26 1 -0.3633 0.0002 -1.0277 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5139 29 1 1.6584 2.1313 -0.0004 30 1 4.1197 2.1327 0.0107 31 1 5.3552 0.0039 0.0106 32 1 4.5238 -2.8172 1.0286 33 1 3.7611 -3.2610 -0.5173 34 1 5.3001 -2.3666 -0.5085 35 1 2.1104 -3.1353 1.8209 36 1 0.5677 -2.2476 1.8171 37 1 -0.5110 -3.8380 3.8139 38 1 0.4137 -5.3205 4.1537 39 1 1.2364 -3.8933 3.4796 40 1 0.2033 -7.1624 3.6417 41 1 -0.4438 -8.2918 2.4272 42 1 1.0807 -7.4278 2.1158 43 1 -4.7181 -7.8463 3.0136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264108812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:53 Heat of formation + Delta-G solvation = -62.891552 kcal Electronic energy + Delta-G solvation = -23544.347405 eV Core-core repulsion = 20168.464262 eV Total energy + Delta-G solvation = -3375.883143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.47823 -40.58885 -38.23739 -37.19385 -34.84144 -34.53559 -32.71783 -32.02435 -29.51706 -27.77671 -27.54783 -27.52154 -27.12374 -23.35944 -22.61273 -21.83747 -20.18240 -19.09151 -18.81159 -17.76479 -17.60375 -17.50651 -16.72021 -16.30441 -16.11662 -15.49565 -15.03244 -14.88082 -14.69036 -14.56297 -14.12378 -14.08129 -13.88349 -13.84950 -13.80280 -13.60704 -13.57035 -13.14363 -13.03245 -12.86660 -12.58783 -12.47250 -12.28286 -12.12473 -12.06487 -11.60071 -11.38155 -10.93474 -10.81610 -10.71074 -9.53561 -9.49737 -9.47801 -8.36872 -6.41700 0.18669 0.37623 1.24657 1.35076 1.43511 1.58103 1.83522 2.26333 2.61339 2.98193 3.02431 3.58475 3.81278 3.88264 3.96868 4.08036 4.11069 4.34598 4.39327 4.42923 4.46582 4.52581 4.56606 4.58807 4.61073 4.69886 4.72372 4.75694 4.86168 4.92526 4.93433 5.05767 5.16407 5.28643 5.31830 5.45461 5.51829 5.52680 5.62607 5.65095 5.85681 6.16646 6.49799 6.59146 6.65798 7.16285 7.29504 8.79095 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028166 B = 0.003681 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.872929 B = 7605.261387 C = 8002.016589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.111 4.111 3 C -0.118 4.118 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.108 4.108 7 C -0.114 4.114 8 C 0.059 3.941 9 O -0.333 6.333 10 C 0.065 3.935 11 C 0.500 3.500 12 O -0.585 6.585 13 N -0.591 5.591 14 C 0.078 3.922 15 C 0.232 3.768 16 H 0.029 0.971 17 C -0.154 4.154 18 C -0.527 4.527 19 H 0.046 0.954 20 C 0.024 3.976 21 N -0.938 5.938 22 Si 0.940 3.060 23 H -0.250 1.250 24 H -0.296 1.296 25 H -0.265 1.265 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.148 0.852 30 H 0.156 0.844 31 H 0.152 0.848 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.043 0.957 42 H 0.057 0.943 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.604 15.828 -0.539 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.112 4.112 3 C -0.136 4.136 4 C -0.130 4.130 5 C -0.134 4.134 6 C -0.109 4.109 7 C -0.170 4.170 8 C 0.016 3.984 9 O -0.250 6.250 10 C -0.012 4.012 11 C 0.288 3.712 12 O -0.466 6.466 13 N -0.323 5.323 14 C -0.064 4.064 15 C 0.129 3.871 16 H 0.047 0.953 17 C -0.212 4.212 18 C -0.566 4.566 19 H 0.065 0.935 20 C -0.175 4.175 21 N -0.577 5.577 22 Si 0.767 3.233 23 H -0.175 1.175 24 H -0.223 1.223 25 H -0.189 1.189 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.108 0.892 29 H 0.166 0.834 30 H 0.174 0.826 31 H 0.170 0.830 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.128 0.872 36 H 0.114 0.886 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 19.259 15.414 -1.203 24.697 hybrid contribution -0.797 -0.964 -0.235 1.273 sum 18.461 14.450 -1.438 23.488 Atomic orbital electron populations 1.20722 0.90781 1.02819 1.02592 1.20453 0.97013 0.92998 1.00706 1.21241 0.94933 0.97020 1.00387 1.21556 0.93960 0.99185 0.98316 1.21267 1.01153 0.90781 1.00210 1.20468 0.92357 0.97630 1.00420 1.20743 0.99939 0.93311 1.03053 1.18766 0.90390 0.84571 1.04668 1.86088 1.75195 1.35863 1.27824 1.22405 1.00586 0.92185 0.86040 1.20782 0.79814 0.86104 0.84451 1.90649 1.58763 1.71714 1.25446 1.47863 1.54523 1.22937 1.06935 1.21937 1.01331 1.01073 0.82076 1.18993 0.90062 0.81595 0.96498 0.95349 1.22317 0.99026 0.97510 1.02316 1.21345 0.98569 1.00731 1.35946 0.93544 1.25629 0.94578 1.01897 0.95385 1.69994 1.08533 1.33145 1.46068 0.85996 0.77234 0.80196 0.79881 1.17521 1.22314 1.18948 0.91373 0.93418 0.89175 0.83393 0.82593 0.83028 0.90085 0.93263 0.89376 0.87246 0.88640 0.93021 0.89930 0.88235 0.90599 0.93902 0.92413 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.66 9.79 71.24 0.70 -1.96 16 2 C -0.11 -2.64 5.89 -19.77 -0.12 -2.76 16 3 C -0.12 -2.06 9.70 22.26 0.22 -1.85 16 4 C -0.11 -1.64 10.04 22.28 0.22 -1.41 16 5 C -0.12 -1.89 9.70 22.25 0.22 -1.68 16 6 C -0.11 -2.39 5.89 -19.77 -0.12 -2.51 16 7 C -0.11 -2.26 9.79 71.24 0.70 -1.56 16 8 C 0.06 1.61 5.67 22.51 0.13 1.74 16 9 O -0.33 -11.23 7.86 -73.35 -0.58 -11.80 16 10 C 0.06 1.95 4.72 71.23 0.34 2.29 16 11 C 0.50 20.64 7.75 87.66 0.68 21.32 16 12 O -0.59 -30.23 15.83 16.00 0.25 -29.98 16 13 N -0.59 -23.97 2.75 -826.79 -2.28 -26.24 16 14 C 0.08 2.30 9.48 127.77 1.21 3.51 16 15 C 0.23 11.25 2.23 44.24 0.10 11.35 16 16 H 0.03 1.59 5.96 -2.38 -0.01 1.57 16 17 C -0.15 -6.29 8.65 71.98 0.62 -5.67 16 18 C -0.53 -29.80 8.95 25.60 0.23 -29.57 16 19 H 0.05 2.85 7.89 -2.91 -0.02 2.83 16 20 C 0.02 1.39 5.45 84.65 0.46 1.85 16 21 N -0.94 -57.71 13.96 21.45 0.30 -57.41 16 22 Si 0.94 45.36 24.37 68.60 1.67 47.03 16 23 H -0.25 -10.94 6.87 99.48 0.68 -10.25 16 24 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 25 H -0.26 -12.76 6.53 99.48 0.65 -12.11 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.05 1.32 6.30 -2.39 -0.02 1.31 16 28 H 0.09 1.61 8.09 -2.39 -0.02 1.59 16 29 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 30 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 31 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.26 7.53 -2.38 -0.02 1.24 16 34 H 0.09 1.32 8.09 -2.39 -0.02 1.30 16 35 H 0.11 2.52 7.40 -2.39 -0.02 2.50 16 36 H 0.10 2.54 7.20 -2.39 -0.02 2.53 16 37 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.08 2.37 6.43 -2.39 -0.02 2.36 16 39 H 0.10 2.01 6.44 -2.38 -0.02 1.99 16 40 H 0.08 2.78 6.66 -2.38 -0.02 2.77 16 41 H 0.04 1.82 3.27 -2.39 -0.01 1.81 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -77.40 345.28 5.88 -71.53 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.92 Total: 13.79 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: 5.58 Total: -6.90 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -1.98 Total: -83.65 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -0.32 Total: -41.78 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.67 Total: 47.03 kcal Total: -77.40 5.88 -71.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264108812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.634 kcal (2) G-P(sol) polarization free energy of solvation -77.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds