Wall clock time and date at job start Tue Mar 31 2020 06:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38288 * 119.97183 * 2 1 4 4 C 1.38239 * 120.11363 * 180.02562 * 3 2 1 5 5 C 1.38170 * 120.05480 * 359.68420 * 4 3 2 6 6 C 1.38710 * 119.94238 * 0.56933 * 5 4 3 7 7 O 1.35894 * 120.05627 * 179.72550 * 6 5 4 8 8 C 1.42896 * 117.00341 * 359.72524 * 7 6 5 9 9 C 1.52993 * 109.47471 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47077 * 304.99620 * 9 8 7 11 11 O 1.42898 * 109.47526 * 64.99886 * 9 8 7 12 12 C 1.53004 * 109.47311 * 184.99980 * 9 8 7 13 13 N 1.46496 * 109.47182 * 179.97438 * 12 9 8 14 14 C 1.36943 * 119.99574 * 90.00334 * 13 12 9 15 15 H 1.08004 * 119.99684 * 217.92141 * 14 13 12 16 16 C 1.38805 * 120.00295 * 37.92551 * 14 13 12 17 17 N 1.31619 * 120.00226 * 20.53958 * 16 14 13 18 18 Si 1.86798 * 120.00025 * 200.54473 * 16 14 13 19 19 H 1.48502 * 109.47364 * 59.99664 * 18 16 14 20 20 H 1.48498 * 109.47439 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47094 * 299.99544 * 18 16 14 22 22 C 1.46492 * 120.00295 * 269.99893 * 13 12 9 23 23 C 1.53007 * 117.50228 * 194.21826 * 22 13 12 24 24 C 1.53004 * 60.00118 * 252.50956 * 23 22 13 25 25 C 1.38115 * 119.97183 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47288 * 270.02081 * 1 2 3 27 27 H 1.09006 * 109.47151 * 30.01940 * 1 2 3 28 28 H 1.08996 * 109.47178 * 150.02024 * 1 2 3 29 29 H 1.08007 * 119.94198 * 0.02562 * 3 2 1 30 30 H 1.08000 * 119.97400 * 179.97438 * 4 3 2 31 31 H 1.07998 * 120.02716 * 180.29238 * 5 4 3 32 32 H 1.09005 * 109.47286 * 59.99727 * 8 7 6 33 33 H 1.09004 * 109.46903 * 300.00287 * 8 7 6 34 34 H 0.96703 * 113.99561 * 59.99657 * 11 9 8 35 35 H 1.08999 * 109.46907 * 59.99716 * 12 9 8 36 36 H 1.09000 * 109.47188 * 300.00099 * 12 9 8 37 37 H 0.97003 * 120.00449 * 174.92903 * 17 16 14 38 38 H 1.09002 * 115.55507 * 339.92645 * 22 13 12 39 39 H 1.09002 * 117.49469 * 0.02562 * 23 22 13 40 40 H 1.08995 * 117.50262 * 145.02243 * 23 22 13 41 41 H 1.08994 * 117.49836 * 252.51251 * 24 23 22 42 42 H 1.08997 * 117.51817 * 107.47209 * 24 23 22 43 43 H 1.07995 * 120.02984 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5802 1.2014 -0.0005 5 6 4.2752 0.0072 0.0055 6 6 3.5846 -1.1958 0.0002 7 8 4.2658 -2.3717 0.0005 8 6 5.6927 -2.2949 0.0003 9 6 6.2795 -3.7078 0.0001 10 1 5.8747 -4.2695 0.8419 11 8 5.9363 -4.3660 -1.2210 12 6 7.8023 -3.6276 0.1256 13 7 8.3642 -4.9805 0.1260 14 6 8.7222 -5.5735 -1.0553 15 1 8.5498 -6.6294 -1.2035 16 6 9.3065 -4.8176 -2.0623 17 7 9.8828 -3.6701 -1.7736 18 14 9.2749 -5.4290 -3.8271 19 1 7.8667 -5.5895 -4.2702 20 1 9.9602 -4.4458 -4.7039 21 1 9.9722 -6.7375 -3.9102 22 6 8.5431 -5.6990 1.3900 23 6 9.4260 -6.9486 1.3736 24 6 7.9083 -7.0860 1.5103 25 6 2.1970 -1.1964 0.0005 26 1 -0.3634 0.0004 1.0276 27 1 -0.3634 0.8899 -0.5142 28 1 -0.3633 -0.8901 -0.5135 29 1 1.6564 2.1325 0.0004 30 1 4.1175 2.1383 -0.0010 31 1 5.3551 0.0104 0.0099 32 1 6.0280 -1.7619 0.8901 33 1 6.0278 -1.7624 -0.8898 34 1 6.2649 -3.9203 -2.0138 35 1 8.0641 -3.1256 1.0570 36 1 8.2072 -3.0658 -0.7161 37 1 10.3549 -3.1774 -2.4631 38 1 8.5672 -5.0773 2.2850 39 1 9.8739 -7.2358 0.4222 40 1 10.0311 -7.1490 2.2576 41 1 7.5150 -7.3766 2.4844 42 1 7.3571 -7.4635 0.6491 43 1 1.6570 -2.1317 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264307999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:19 Heat of formation + Delta-G solvation = -19.624040 kcal Electronic energy + Delta-G solvation = -23190.978984 eV Core-core repulsion = 19816.972061 eV Total energy + Delta-G solvation = -3374.006923 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.05709 -38.01204 -37.13371 -35.77298 -33.20372 -32.54169 -31.13325 -30.36621 -28.86380 -27.04455 -25.54611 -23.68352 -22.53504 -21.36708 -21.34493 -20.60546 -19.85517 -17.68177 -16.81253 -16.09994 -15.91034 -15.90270 -15.42181 -14.82441 -14.44157 -14.29358 -14.18811 -13.85141 -13.58996 -13.37157 -13.23045 -12.72790 -12.47099 -12.18493 -11.96113 -11.82637 -11.55888 -11.18736 -10.93236 -10.87604 -10.82134 -10.65277 -10.58030 -10.52514 -10.06421 -9.99919 -9.68959 -9.32595 -9.15567 -8.80883 -8.48455 -8.09530 -6.50237 -5.87539 -3.41589 1.30504 1.48323 3.31132 3.38263 3.39593 3.44416 3.75803 4.40027 4.75101 4.80071 4.93701 5.01971 5.08515 5.15588 5.18855 5.30468 5.32340 5.36820 5.44229 5.47531 5.56662 5.66303 5.72508 5.83640 5.89493 6.04316 6.06863 6.16781 6.26762 6.33607 6.36592 6.45247 6.50621 6.55095 6.61264 6.71310 6.82417 7.00792 7.18607 7.38718 7.60771 7.79410 8.43709 8.53062 9.09793 9.71218 10.28070 11.14044 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018836 B = 0.003731 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.171901 B = 7501.889241 C = 8155.041938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.052 4.052 3 C -0.169 4.169 4 C -0.077 4.077 5 C -0.218 4.218 6 C 0.141 3.859 7 O -0.304 6.304 8 C 0.028 3.972 9 C 0.092 3.908 10 H 0.089 0.911 11 O -0.538 6.538 12 C 0.123 3.877 13 N -0.539 5.539 14 C -0.239 4.239 15 H 0.060 0.940 16 C 0.011 3.989 17 N -0.896 5.896 18 Si 0.898 3.102 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.125 3.875 23 C -0.195 4.195 24 C -0.225 4.225 25 C -0.159 4.159 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.366 0.634 35 H 0.036 0.964 36 H 0.104 0.896 37 H 0.257 0.743 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.279 8.675 4.605 15.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.052 4.052 3 C -0.187 4.187 4 C -0.095 4.095 5 C -0.237 4.237 6 C 0.095 3.905 7 O -0.216 6.216 8 C -0.048 4.048 9 C 0.030 3.970 10 H 0.107 0.893 11 O -0.341 6.341 12 C -0.005 4.005 13 N -0.254 5.254 14 C -0.369 4.369 15 H 0.078 0.922 16 C -0.188 4.188 17 N -0.540 5.540 18 Si 0.727 3.273 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.015 3.985 23 C -0.234 4.234 24 C -0.266 4.266 25 C -0.178 4.178 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.212 0.788 35 H 0.055 0.945 36 H 0.121 0.879 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.563 8.227 4.865 15.785 hybrid contribution 0.601 0.278 -1.230 1.397 sum -11.961 8.505 3.634 15.120 Atomic orbital electron populations 1.20790 0.90995 1.02820 1.02376 1.19670 0.95866 0.92361 0.97280 1.20862 0.94148 0.97323 1.06399 1.20908 0.94127 0.97354 0.97085 1.21333 1.00573 0.92307 1.09449 1.19166 0.91900 0.85376 0.94063 1.86211 1.20741 1.27180 1.87514 1.23896 0.77510 1.02003 1.01425 1.22887 0.97456 0.88092 0.88581 0.89306 1.86551 1.78791 1.53988 1.14799 1.21511 0.88239 0.88401 1.02322 1.43131 1.67964 1.13658 1.00660 1.18838 1.33748 0.94295 0.90003 0.92188 1.25150 0.97065 0.97451 0.99136 1.69875 1.34857 1.16340 1.32878 0.86439 0.78167 0.78089 0.84569 1.20445 1.21730 1.20744 1.21134 1.00571 0.86600 0.90165 1.23068 0.92545 1.05774 1.02026 1.23361 0.95658 1.06794 1.00820 1.20309 0.91113 0.98519 1.07847 0.91055 0.91481 0.91381 0.86299 0.86006 0.85372 0.91768 0.91906 0.78781 0.94540 0.87884 0.93312 0.89504 0.88319 0.90841 0.90994 0.89512 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.00 0.36 -0.58 16 2 C -0.05 -0.60 5.88 -104.65 -0.62 -1.21 16 3 C -0.17 -1.87 9.70 -39.56 -0.38 -2.26 16 4 C -0.08 -0.90 10.04 -39.61 -0.40 -1.30 16 5 C -0.22 -2.97 9.04 -39.43 -0.36 -3.33 16 6 C 0.14 2.16 6.69 -39.21 -0.26 1.90 16 7 O -0.30 -5.23 10.10 -24.26 -0.25 -5.47 16 8 C 0.03 0.45 4.37 37.15 0.16 0.62 16 9 C 0.09 1.78 3.52 -26.73 -0.09 1.69 16 10 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 11 O -0.54 -11.55 12.58 -40.08 -0.50 -12.06 16 12 C 0.12 2.63 5.05 -4.04 -0.02 2.61 16 13 N -0.54 -12.80 2.73 -165.66 -0.45 -13.25 16 14 C -0.24 -6.21 7.39 -15.06 -0.11 -6.32 16 15 H 0.06 1.63 7.21 -52.48 -0.38 1.25 16 16 C 0.01 0.29 4.97 -17.43 -0.09 0.20 16 17 N -0.90 -24.14 11.44 55.49 0.63 -23.51 16 18 Si 0.90 20.87 29.60 -169.99 -5.03 15.84 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C 0.12 2.64 6.62 -67.93 -0.45 2.19 16 23 C -0.20 -3.92 9.81 -26.73 -0.26 -4.18 16 24 C -0.23 -4.40 10.08 -26.73 -0.27 -4.67 16 25 C -0.16 -2.18 9.64 -39.43 -0.38 -2.56 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.07 0.53 8.08 -51.93 -0.42 0.12 16 29 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.13 1.65 6.30 -52.49 -0.33 1.32 16 32 H 0.06 0.94 7.65 -51.93 -0.40 0.54 16 33 H 0.06 0.99 7.67 -51.93 -0.40 0.60 16 34 H 0.37 7.37 9.05 45.56 0.41 7.78 16 35 H 0.04 0.73 8.04 -51.93 -0.42 0.31 16 36 H 0.10 2.45 5.51 -51.93 -0.29 2.16 16 37 H 0.26 6.75 8.32 -40.82 -0.34 6.41 16 38 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 39 H 0.10 2.19 6.96 -51.93 -0.36 1.83 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.09 1.85 7.99 -51.93 -0.41 1.44 16 43 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -28.91 356.28 -9.32 -38.23 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -5.93 Total: 12.06 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: -3.17 Total: -17.22 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.18 Total: -36.76 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.75 Total: -17.53 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.91 -9.32 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264307999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.610 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds