Wall clock time and date at job start Tue Mar 31 2020 06:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38288 * 119.97183 * 2 1 4 4 C 1.38239 * 120.11363 * 180.02562 * 3 2 1 5 5 C 1.38170 * 120.05480 * 359.68420 * 4 3 2 6 6 C 1.38710 * 119.94238 * 0.56933 * 5 4 3 7 7 O 1.35894 * 120.05627 * 179.72550 * 6 5 4 8 8 C 1.42896 * 117.00341 * 359.72524 * 7 6 5 9 9 C 1.52993 * 109.47471 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47077 * 304.99620 * 9 8 7 11 11 O 1.42898 * 109.47526 * 64.99886 * 9 8 7 12 12 C 1.53004 * 109.47311 * 184.99980 * 9 8 7 13 13 N 1.46496 * 109.47182 * 179.97438 * 12 9 8 14 14 C 1.36943 * 119.99574 * 90.00334 * 13 12 9 15 15 H 1.08004 * 119.99684 * 217.92141 * 14 13 12 16 16 C 1.38805 * 120.00295 * 37.92551 * 14 13 12 17 17 N 1.31619 * 120.00226 * 20.53958 * 16 14 13 18 18 Si 1.86798 * 120.00025 * 200.54473 * 16 14 13 19 19 H 1.48502 * 109.47364 * 59.99664 * 18 16 14 20 20 H 1.48498 * 109.47439 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47094 * 299.99544 * 18 16 14 22 22 C 1.46492 * 120.00295 * 269.99893 * 13 12 9 23 23 C 1.53007 * 117.50228 * 194.21826 * 22 13 12 24 24 C 1.53004 * 60.00118 * 252.50956 * 23 22 13 25 25 C 1.38115 * 119.97183 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47288 * 270.02081 * 1 2 3 27 27 H 1.09006 * 109.47151 * 30.01940 * 1 2 3 28 28 H 1.08996 * 109.47178 * 150.02024 * 1 2 3 29 29 H 1.08007 * 119.94198 * 0.02562 * 3 2 1 30 30 H 1.08000 * 119.97400 * 179.97438 * 4 3 2 31 31 H 1.07998 * 120.02716 * 180.29238 * 5 4 3 32 32 H 1.09005 * 109.47286 * 59.99727 * 8 7 6 33 33 H 1.09004 * 109.46903 * 300.00287 * 8 7 6 34 34 H 0.96703 * 113.99561 * 59.99657 * 11 9 8 35 35 H 1.08999 * 109.46907 * 59.99716 * 12 9 8 36 36 H 1.09000 * 109.47188 * 300.00099 * 12 9 8 37 37 H 0.97003 * 120.00449 * 174.92903 * 17 16 14 38 38 H 1.09002 * 115.55507 * 339.92645 * 22 13 12 39 39 H 1.09002 * 117.49469 * 0.02562 * 23 22 13 40 40 H 1.08995 * 117.50262 * 145.02243 * 23 22 13 41 41 H 1.08994 * 117.49836 * 252.51251 * 24 23 22 42 42 H 1.08997 * 117.51817 * 107.47209 * 24 23 22 43 43 H 1.07995 * 120.02984 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5802 1.2014 -0.0005 5 6 4.2752 0.0072 0.0055 6 6 3.5846 -1.1958 0.0002 7 8 4.2658 -2.3717 0.0005 8 6 5.6927 -2.2949 0.0003 9 6 6.2795 -3.7078 0.0001 10 1 5.8747 -4.2695 0.8419 11 8 5.9363 -4.3660 -1.2210 12 6 7.8023 -3.6276 0.1256 13 7 8.3642 -4.9805 0.1260 14 6 8.7222 -5.5735 -1.0553 15 1 8.5498 -6.6294 -1.2035 16 6 9.3065 -4.8176 -2.0623 17 7 9.8828 -3.6701 -1.7736 18 14 9.2749 -5.4290 -3.8271 19 1 7.8667 -5.5895 -4.2702 20 1 9.9602 -4.4458 -4.7039 21 1 9.9722 -6.7375 -3.9102 22 6 8.5431 -5.6990 1.3900 23 6 9.4260 -6.9486 1.3736 24 6 7.9083 -7.0860 1.5103 25 6 2.1970 -1.1964 0.0005 26 1 -0.3634 0.0004 1.0276 27 1 -0.3634 0.8899 -0.5142 28 1 -0.3633 -0.8901 -0.5135 29 1 1.6564 2.1325 0.0004 30 1 4.1175 2.1383 -0.0010 31 1 5.3551 0.0104 0.0099 32 1 6.0280 -1.7619 0.8901 33 1 6.0278 -1.7624 -0.8898 34 1 6.2649 -3.9203 -2.0138 35 1 8.0641 -3.1256 1.0570 36 1 8.2072 -3.0658 -0.7161 37 1 10.3549 -3.1774 -2.4631 38 1 8.5672 -5.0773 2.2850 39 1 9.8739 -7.2358 0.4222 40 1 10.0311 -7.1490 2.2576 41 1 7.5150 -7.3766 2.4844 42 1 7.3571 -7.4635 0.6491 43 1 1.6570 -2.1317 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264307999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:18 Heat of formation + Delta-G solvation = -35.923771 kcal Electronic energy + Delta-G solvation = -23191.685793 eV Core-core repulsion = 19816.972061 eV Total energy + Delta-G solvation = -3374.713732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15391 -39.41133 -38.54850 -37.33159 -35.03858 -33.40465 -32.86450 -31.66150 -30.29033 -27.92565 -27.19468 -25.35762 -23.52545 -22.94853 -22.74796 -21.80435 -21.62876 -18.89915 -18.36684 -17.64777 -17.36291 -17.00618 -16.86003 -16.29608 -16.18868 -15.83790 -15.20887 -15.19276 -15.09343 -14.40299 -14.22958 -14.20269 -13.79672 -13.57662 -13.05822 -12.96460 -12.91949 -12.68723 -12.66918 -12.43642 -12.36107 -12.16963 -11.96244 -11.87444 -11.82073 -11.60434 -11.40927 -10.98035 -10.77117 -10.42119 -9.74301 -9.13410 -8.39117 -7.83078 -5.41056 0.36003 0.49833 1.45012 1.49089 1.55901 2.14748 2.50386 2.80029 3.16662 3.39036 3.49359 3.67272 3.84734 3.91542 4.00935 4.11586 4.16622 4.29496 4.31415 4.41841 4.43130 4.48531 4.52326 4.57074 4.64403 4.71424 4.84588 4.87530 4.95120 5.02276 5.03915 5.10425 5.24827 5.35498 5.39393 5.50272 5.55166 5.61715 5.64786 5.73303 5.89642 6.46156 6.49734 6.89097 7.17434 7.83533 8.35168 9.13599 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018836 B = 0.003731 C = 0.003433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.171901 B = 7501.889241 C = 8155.041938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.053 4.053 3 C -0.166 4.166 4 C -0.079 4.079 5 C -0.231 4.231 6 C 0.110 3.890 7 O -0.327 6.327 8 C 0.041 3.959 9 C 0.102 3.898 10 H 0.082 0.918 11 O -0.557 6.557 12 C 0.127 3.873 13 N -0.558 5.558 14 C -0.240 4.240 15 H 0.041 0.959 16 C -0.024 4.024 17 N -0.917 5.917 18 Si 0.948 3.052 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.102 3.898 23 C -0.192 4.192 24 C -0.209 4.209 25 C -0.178 4.178 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.069 0.931 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.369 0.631 35 H 0.050 0.950 36 H 0.081 0.919 37 H 0.254 0.746 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.616 10.126 5.491 17.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.053 4.053 3 C -0.184 4.184 4 C -0.097 4.097 5 C -0.249 4.249 6 C 0.065 3.935 7 O -0.241 6.241 8 C -0.035 4.035 9 C 0.040 3.960 10 H 0.100 0.900 11 O -0.362 6.362 12 C 0.000 4.000 13 N -0.274 5.274 14 C -0.370 4.370 15 H 0.059 0.941 16 C -0.221 4.221 17 N -0.562 5.562 18 Si 0.777 3.223 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.211 1.211 22 C -0.007 4.007 23 C -0.231 4.231 24 C -0.249 4.249 25 C -0.196 4.196 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.168 0.832 30 H 0.166 0.834 31 H 0.148 0.852 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.215 0.785 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.127 0.873 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.080 0.920 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.916 9.677 5.766 17.904 hybrid contribution 0.929 -0.146 -1.443 1.722 sum -12.987 9.532 4.323 16.679 Atomic orbital electron populations 1.20864 0.88614 1.03888 1.03481 1.20081 0.97639 0.91731 0.95846 1.21292 0.94121 0.98370 1.04605 1.21278 0.94775 0.97633 0.95996 1.21477 1.00873 0.92573 1.10026 1.19453 0.92543 0.85207 0.96275 1.86129 1.20711 1.28802 1.88414 1.23589 0.77712 0.99810 1.02358 1.22652 0.96225 0.89627 0.87473 0.90037 1.86512 1.79021 1.55007 1.15628 1.21433 0.89281 0.87330 1.01985 1.43313 1.68678 1.14400 1.00970 1.18782 1.33249 0.93630 0.91349 0.94112 1.25588 0.97230 0.97772 1.01502 1.69971 1.35753 1.17102 1.33347 0.85658 0.77835 0.77335 0.81473 1.20447 1.21633 1.21052 1.21454 1.01917 0.87369 0.89937 1.23052 0.93176 1.04954 1.01918 1.23283 0.95079 1.05106 1.01442 1.20527 0.90780 0.99584 1.08745 0.89795 0.89587 0.91200 0.83217 0.83399 0.85206 0.90003 0.91758 0.78480 0.93151 0.90089 0.93652 0.87271 0.91176 0.87802 0.87744 0.91965 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 10.01 71.24 0.71 -0.85 16 2 C -0.05 -1.12 5.88 -19.88 -0.12 -1.23 16 3 C -0.17 -3.19 9.70 22.28 0.22 -2.97 16 4 C -0.08 -1.67 10.04 22.25 0.22 -1.45 16 5 C -0.23 -6.10 9.04 22.37 0.20 -5.90 16 6 C 0.11 3.37 6.69 22.51 0.15 3.52 16 7 O -0.33 -11.43 10.10 -87.72 -0.89 -12.31 16 8 C 0.04 1.35 4.37 71.98 0.31 1.67 16 9 C 0.10 3.98 3.52 30.59 0.11 4.09 16 10 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 11 O -0.56 -24.55 12.58 -144.34 -1.82 -26.36 16 12 C 0.13 5.46 5.05 86.38 0.44 5.89 16 13 N -0.56 -26.70 2.73 -678.03 -1.85 -28.55 16 14 C -0.24 -12.71 7.39 84.03 0.62 -12.09 16 15 H 0.04 2.29 7.21 -2.91 -0.02 2.27 16 16 C -0.02 -1.27 4.97 84.86 0.42 -0.84 16 17 N -0.92 -50.10 11.44 21.65 0.25 -49.85 16 18 Si 0.95 43.68 29.60 68.60 2.03 45.71 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 22 C 0.10 4.22 6.62 45.00 0.30 4.51 16 23 C -0.19 -7.54 9.81 30.60 0.30 -7.24 16 24 C -0.21 -7.91 10.08 30.60 0.31 -7.60 16 25 C -0.18 -4.80 9.64 22.37 0.22 -4.59 16 26 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.09 0.89 8.09 -2.38 -0.02 0.87 16 28 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 29 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.13 3.26 6.30 -2.91 -0.02 3.24 16 32 H 0.08 2.35 7.65 -2.38 -0.02 2.34 16 33 H 0.06 2.06 7.67 -2.39 -0.02 2.05 16 34 H 0.37 15.37 9.05 -74.06 -0.67 14.70 16 35 H 0.05 1.99 8.04 -2.39 -0.02 1.97 16 36 H 0.08 3.92 5.51 -2.39 -0.01 3.90 16 37 H 0.25 13.53 8.32 -92.71 -0.77 12.76 16 38 H 0.11 4.00 8.10 -2.39 -0.02 3.98 16 39 H 0.07 3.16 6.96 -2.39 -0.02 3.14 16 40 H 0.10 3.40 8.14 -2.39 -0.02 3.39 16 41 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.06 2.67 7.99 -2.39 -0.02 2.65 16 43 H 0.13 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -62.73 356.28 2.47 -60.26 By element: Atomic # 1 Polarization: 35.85 SS G_CDS: 0.33 Total: 36.18 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 4.41 Total: -25.07 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -1.60 Total: -78.41 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -2.70 Total: -38.67 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -62.73 2.47 -60.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264307999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.340 kcal (2) G-P(sol) polarization free energy of solvation -62.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds