Wall clock time and date at job start Tue Mar 31 2020 06:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38284 * 119.97297 * 2 1 4 4 C 1.38249 * 120.11508 * 180.02562 * 3 2 1 5 5 C 1.38167 * 120.05014 * 359.67919 * 4 3 2 6 6 C 1.38710 * 119.94552 * 0.57370 * 5 4 3 7 7 O 1.35898 * 120.05428 * 179.72407 * 6 5 4 8 8 C 1.42899 * 117.00405 * 359.72382 * 7 6 5 9 9 C 1.52996 * 109.47231 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47515 * 55.00349 * 9 8 7 11 11 O 1.42896 * 109.47525 * 294.99759 * 9 8 7 12 12 C 1.53009 * 109.47117 * 174.99948 * 9 8 7 13 13 N 1.46495 * 109.47201 * 184.99969 * 12 9 8 14 14 C 1.36939 * 119.99832 * 90.00390 * 13 12 9 15 15 H 1.07999 * 120.00095 * 304.51469 * 14 13 12 16 16 C 1.38805 * 119.99966 * 124.51130 * 14 13 12 17 17 N 1.31619 * 119.99984 * 164.63314 * 16 14 13 18 18 Si 1.86803 * 120.00365 * 344.63648 * 16 14 13 19 19 H 1.48500 * 109.47312 * 91.86390 * 18 16 14 20 20 H 1.48497 * 109.46973 * 211.86703 * 18 16 14 21 21 H 1.48506 * 109.46604 * 331.86408 * 18 16 14 22 22 C 1.46492 * 120.00100 * 270.00015 * 13 12 9 23 23 C 1.53001 * 117.49832 * 183.08683 * 22 13 12 24 24 C 1.53004 * 117.49700 * 114.42771 * 22 13 12 25 25 C 1.38123 * 119.97344 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47369 * 270.02337 * 1 2 3 27 27 H 1.08996 * 109.47088 * 30.02453 * 1 2 3 28 28 H 1.09001 * 109.47250 * 150.02311 * 1 2 3 29 29 H 1.08000 * 119.94152 * 359.97438 * 3 2 1 30 30 H 1.07994 * 119.97438 * 179.97438 * 4 3 2 31 31 H 1.08006 * 120.02733 * 180.29856 * 5 4 3 32 32 H 1.09003 * 109.46814 * 59.99899 * 8 7 6 33 33 H 1.09002 * 109.47187 * 300.00130 * 8 7 6 34 34 H 0.96693 * 114.00421 * 300.00567 * 11 9 8 35 35 H 1.09000 * 109.47095 * 305.00791 * 12 9 8 36 36 H 1.09007 * 109.46629 * 65.00081 * 12 9 8 37 37 H 0.97002 * 120.00637 * 180.02562 * 17 16 14 38 38 H 1.09001 * 115.55647 * 328.75625 * 22 13 12 39 39 H 1.08994 * 117.49861 * 359.97438 * 23 22 13 40 40 H 1.08998 * 117.50305 * 145.02550 * 23 22 13 41 41 H 1.09009 * 117.49711 * 214.97733 * 24 22 13 42 42 H 1.08994 * 117.49987 * 359.97438 * 24 22 13 43 43 H 1.07998 * 120.02741 * 0.02813 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0071 0.0056 6 6 3.5846 -1.1958 0.0003 7 8 4.2658 -2.3717 0.0007 8 6 5.6927 -2.2949 0.0006 9 6 6.2795 -3.7079 0.0017 10 1 5.8746 -4.2702 -0.8397 11 8 5.9366 -4.3652 1.2232 12 6 7.8023 -3.6278 -0.1242 13 7 8.3543 -4.9796 -0.2432 14 6 8.5114 -5.5486 -1.4788 15 1 7.6671 -5.6297 -2.1473 16 6 9.7559 -6.0211 -1.8720 17 7 9.8566 -6.8273 -2.9075 18 14 11.2879 -5.5130 -0.9316 19 1 11.5671 -6.5081 0.1347 20 1 12.4423 -5.4490 -1.8635 21 1 11.0720 -4.1777 -0.3184 22 6 8.7381 -5.7226 0.9596 23 6 9.3751 -7.1001 0.7658 24 6 7.9426 -6.9863 1.2932 25 6 2.1970 -1.1965 0.0005 26 1 -0.3634 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6564 2.1324 -0.0004 30 1 4.1175 2.1382 -0.0010 31 1 5.3552 0.0102 0.0101 32 1 6.0279 -1.7619 0.8904 33 1 6.0279 -1.7626 -0.8896 34 1 6.2652 -3.9192 2.0157 35 1 8.0637 -3.0492 -1.0102 36 1 8.2150 -3.1434 0.7609 37 1 10.7262 -7.1579 -3.1822 38 1 9.0932 -5.1167 1.7932 39 1 9.5082 -7.4536 -0.2566 40 1 10.1490 -7.4006 1.4721 41 1 7.7747 -7.2119 2.3464 42 1 7.1335 -7.2645 0.6180 43 1 1.6571 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264308002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:22 Heat of formation + Delta-G solvation = -14.296616 kcal Electronic energy + Delta-G solvation = -23081.496518 eV Core-core repulsion = 19707.720610 eV Total energy + Delta-G solvation = -3373.775908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.18430 -38.22908 -37.33824 -36.05287 -32.92343 -32.62823 -31.80398 -30.68212 -29.10401 -27.13312 -25.72331 -23.59600 -22.63615 -21.52674 -21.44899 -20.81206 -19.82874 -17.76698 -16.97676 -16.55926 -16.15250 -16.00850 -15.42832 -14.88290 -14.67463 -14.38820 -14.33926 -13.84214 -13.73384 -13.37957 -13.32535 -12.93831 -12.70707 -12.28015 -12.10640 -12.00152 -11.70397 -11.64826 -11.21572 -11.02461 -10.84615 -10.71937 -10.55760 -10.37764 -10.31972 -9.90358 -9.63608 -9.45556 -9.08518 -8.89749 -8.42914 -8.20439 -6.46953 -6.05078 -3.75600 1.21275 1.38748 3.21030 3.36680 3.44970 3.50927 3.66392 4.48772 4.64249 4.68768 4.77415 4.83780 4.94939 4.96641 5.08249 5.13773 5.22544 5.27228 5.31310 5.38813 5.39803 5.51690 5.57803 5.71503 5.80042 5.87581 5.91320 5.96855 6.13107 6.21072 6.25696 6.34029 6.45850 6.47054 6.57201 6.62337 6.66623 6.71905 7.13302 7.36759 7.47593 8.05711 8.12722 8.47214 8.96568 9.58964 10.08422 11.04134 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028779 B = 0.003215 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.704634 B = 8706.598621 C = 8994.559270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.050 4.050 3 C -0.168 4.168 4 C -0.077 4.077 5 C -0.218 4.218 6 C 0.140 3.860 7 O -0.302 6.302 8 C 0.028 3.972 9 C 0.090 3.910 10 H 0.108 0.892 11 O -0.540 6.540 12 C 0.127 3.873 13 N -0.563 5.563 14 C -0.288 4.288 15 H 0.069 0.931 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.887 3.113 19 H -0.269 1.269 20 H -0.304 1.304 21 H -0.272 1.272 22 C 0.114 3.886 23 C -0.204 4.204 24 C -0.196 4.196 25 C -0.158 4.158 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.359 0.641 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.266 0.734 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.754 14.598 8.245 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.050 4.050 3 C -0.186 4.186 4 C -0.095 4.095 5 C -0.237 4.237 6 C 0.094 3.906 7 O -0.215 6.215 8 C -0.048 4.048 9 C 0.028 3.972 10 H 0.126 0.874 11 O -0.343 6.343 12 C 0.000 4.000 13 N -0.282 5.282 14 C -0.417 4.417 15 H 0.087 0.913 16 C -0.145 4.145 17 N -0.534 5.534 18 Si 0.716 3.284 19 H -0.195 1.195 20 H -0.232 1.232 21 H -0.197 1.197 22 C 0.007 3.993 23 C -0.242 4.242 24 C -0.237 4.237 25 C -0.176 4.176 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.204 0.796 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.971 13.876 7.670 19.866 hybrid contribution 1.409 0.749 0.720 1.751 sum -10.562 14.625 8.390 19.896 Atomic orbital electron populations 1.20800 0.90907 1.02907 1.02452 1.19689 0.95945 0.92326 0.97079 1.20880 0.94151 0.97383 1.06164 1.20907 0.94156 0.97338 0.97108 1.21295 1.00418 0.92312 1.09693 1.19134 0.91903 0.85216 0.94320 1.86214 1.20360 1.27253 1.87657 1.23820 0.78109 1.01412 1.01462 1.22889 0.96820 0.88865 0.88637 0.87426 1.86691 1.79311 1.53624 1.14699 1.21458 0.90061 0.88314 1.00167 1.43340 1.72411 1.10838 1.01618 1.18533 0.94148 1.37661 0.91361 0.91307 1.25852 0.98289 0.95548 0.94772 1.69867 1.24855 1.31314 1.27398 0.86765 0.82324 0.79977 0.79380 1.19476 1.23246 1.19708 1.21191 1.01001 0.86481 0.90630 1.23557 0.95127 1.01987 1.03552 1.23232 0.94860 1.06627 0.98973 1.20326 0.91101 0.98607 1.07601 0.90990 0.91424 0.91306 0.86228 0.85984 0.85488 0.92231 0.91252 0.79582 0.91410 0.94027 0.92462 0.89953 0.86388 0.90904 0.91296 0.89221 0.85282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.00 0.36 -0.51 16 2 C -0.05 -0.54 5.88 -104.65 -0.62 -1.15 16 3 C -0.17 -1.69 9.70 -39.56 -0.38 -2.07 16 4 C -0.08 -0.81 10.04 -39.60 -0.40 -1.21 16 5 C -0.22 -2.64 9.04 -39.43 -0.36 -3.00 16 6 C 0.14 1.95 6.69 -39.22 -0.26 1.69 16 7 O -0.30 -4.72 10.10 -24.26 -0.25 -4.96 16 8 C 0.03 0.39 4.37 37.16 0.16 0.55 16 9 C 0.09 1.52 3.49 -26.73 -0.09 1.43 16 10 H 0.11 2.16 8.14 -51.93 -0.42 1.73 16 11 O -0.54 -9.26 12.86 -40.08 -0.52 -9.78 16 12 C 0.13 2.33 5.37 -4.04 -0.02 2.31 16 13 N -0.56 -12.80 2.01 -165.66 -0.33 -13.14 16 14 C -0.29 -7.79 9.17 -15.06 -0.14 -7.93 16 15 H 0.07 2.07 8.06 -52.49 -0.42 1.64 16 16 C 0.06 1.62 3.73 -17.43 -0.07 1.55 16 17 N -0.90 -26.46 13.97 55.49 0.78 -25.69 16 18 Si 0.89 21.71 24.88 -169.99 -4.23 17.48 16 19 H -0.27 -6.33 5.79 56.52 0.33 -6.00 16 20 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.11 2.42 4.76 -67.93 -0.32 2.10 16 23 C -0.20 -4.53 6.69 -26.69 -0.18 -4.71 16 24 C -0.20 -4.04 10.36 -26.69 -0.28 -4.32 16 25 C -0.16 -2.00 9.64 -39.43 -0.38 -2.38 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 28 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 29 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.13 1.37 6.30 -52.48 -0.33 1.04 16 32 H 0.06 0.70 7.65 -51.93 -0.40 0.30 16 33 H 0.07 0.90 7.67 -51.93 -0.40 0.50 16 34 H 0.36 4.77 9.04 45.56 0.41 5.18 16 35 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 36 H 0.04 0.66 8.07 -51.92 -0.42 0.24 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.12 3.04 5.08 -51.93 -0.26 2.77 16 40 H 0.07 1.47 7.85 -51.93 -0.41 1.07 16 41 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 42 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 43 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -31.17 349.90 -8.32 -39.49 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.08 Total: 8.98 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -2.97 Total: -17.65 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.44 Total: -38.83 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.76 Total: -14.74 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.23 Total: 17.48 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.17 -8.32 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264308002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.192 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds