Wall clock time and date at job start Tue Mar 31 2020 06:48:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38284 * 119.97297 * 2 1
4 4 C 1.38249 * 120.11508 * 180.02562 * 3 2 1
5 5 C 1.38167 * 120.05014 * 359.67919 * 4 3 2
6 6 C 1.38710 * 119.94552 * 0.57370 * 5 4 3
7 7 O 1.35898 * 120.05428 * 179.72407 * 6 5 4
8 8 C 1.42899 * 117.00405 * 359.72382 * 7 6 5
9 9 C 1.52996 * 109.47231 * 179.97438 * 8 7 6
10 10 H 1.08999 * 109.47515 * 55.00349 * 9 8 7
11 11 O 1.42896 * 109.47525 * 294.99759 * 9 8 7
12 12 C 1.53009 * 109.47117 * 174.99948 * 9 8 7
13 13 N 1.46495 * 109.47201 * 184.99969 * 12 9 8
14 14 C 1.36939 * 119.99832 * 90.00390 * 13 12 9
15 15 H 1.07999 * 120.00095 * 304.51469 * 14 13 12
16 16 C 1.38805 * 119.99966 * 124.51130 * 14 13 12
17 17 N 1.31619 * 119.99984 * 164.63314 * 16 14 13
18 18 Si 1.86803 * 120.00365 * 344.63648 * 16 14 13
19 19 H 1.48500 * 109.47312 * 91.86390 * 18 16 14
20 20 H 1.48497 * 109.46973 * 211.86703 * 18 16 14
21 21 H 1.48506 * 109.46604 * 331.86408 * 18 16 14
22 22 C 1.46492 * 120.00100 * 270.00015 * 13 12 9
23 23 C 1.53001 * 117.49832 * 183.08683 * 22 13 12
24 24 C 1.53004 * 117.49700 * 114.42771 * 22 13 12
25 25 C 1.38123 * 119.97344 * 179.97438 * 2 1 3
26 26 H 1.09000 * 109.47369 * 270.02337 * 1 2 3
27 27 H 1.08996 * 109.47088 * 30.02453 * 1 2 3
28 28 H 1.09001 * 109.47250 * 150.02311 * 1 2 3
29 29 H 1.08000 * 119.94152 * 359.97438 * 3 2 1
30 30 H 1.07994 * 119.97438 * 179.97438 * 4 3 2
31 31 H 1.08006 * 120.02733 * 180.29856 * 5 4 3
32 32 H 1.09003 * 109.46814 * 59.99899 * 8 7 6
33 33 H 1.09002 * 109.47187 * 300.00130 * 8 7 6
34 34 H 0.96693 * 114.00421 * 300.00567 * 11 9 8
35 35 H 1.09000 * 109.47095 * 305.00791 * 12 9 8
36 36 H 1.09007 * 109.46629 * 65.00081 * 12 9 8
37 37 H 0.97002 * 120.00637 * 180.02562 * 17 16 14
38 38 H 1.09001 * 115.55647 * 328.75625 * 22 13 12
39 39 H 1.08994 * 117.49861 * 359.97438 * 23 22 13
40 40 H 1.08998 * 117.50305 * 145.02550 * 23 22 13
41 41 H 1.09009 * 117.49711 * 214.97733 * 24 22 13
42 42 H 1.08994 * 117.49987 * 359.97438 * 24 22 13
43 43 H 1.07998 * 120.02741 * 0.02813 * 25 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1978 1.1979 0.0000
4 6 3.5803 1.2013 -0.0005
5 6 4.2752 0.0071 0.0056
6 6 3.5846 -1.1958 0.0003
7 8 4.2658 -2.3717 0.0007
8 6 5.6927 -2.2949 0.0006
9 6 6.2795 -3.7079 0.0017
10 1 5.8746 -4.2702 -0.8397
11 8 5.9366 -4.3652 1.2232
12 6 7.8023 -3.6278 -0.1242
13 7 8.3543 -4.9796 -0.2432
14 6 8.5114 -5.5486 -1.4788
15 1 7.6671 -5.6297 -2.1473
16 6 9.7559 -6.0211 -1.8720
17 7 9.8566 -6.8273 -2.9075
18 14 11.2879 -5.5130 -0.9316
19 1 11.5671 -6.5081 0.1347
20 1 12.4423 -5.4490 -1.8635
21 1 11.0720 -4.1777 -0.3184
22 6 8.7381 -5.7226 0.9596
23 6 9.3751 -7.1001 0.7658
24 6 7.9426 -6.9863 1.2932
25 6 2.1970 -1.1965 0.0005
26 1 -0.3634 0.0004 1.0277
27 1 -0.3633 0.8897 -0.5142
28 1 -0.3634 -0.8902 -0.5135
29 1 1.6564 2.1324 -0.0004
30 1 4.1175 2.1382 -0.0010
31 1 5.3552 0.0102 0.0101
32 1 6.0279 -1.7619 0.8904
33 1 6.0279 -1.7626 -0.8896
34 1 6.2652 -3.9192 2.0157
35 1 8.0637 -3.0492 -1.0102
36 1 8.2150 -3.1434 0.7609
37 1 10.7262 -7.1579 -3.1822
38 1 9.0932 -5.1167 1.7932
39 1 9.5082 -7.4536 -0.2566
40 1 10.1490 -7.4006 1.4721
41 1 7.7747 -7.2119 2.3464
42 1 7.1335 -7.2645 0.6180
43 1 1.6571 -2.1318 0.0005
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000264308002.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 06:48:21
Heat of formation + Delta-G solvation = -34.663129 kcal
Electronic energy + Delta-G solvation = -23082.379677 eV
Core-core repulsion = 19707.720610 eV
Total energy + Delta-G solvation = -3374.659067 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 291.162 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.15796 -39.55635 -38.66762 -37.43114 -34.73204 -33.68358 -33.39793 -31.79635
-30.36585 -27.93993 -27.29224 -25.24509 -23.52344 -23.18533 -22.77665 -21.88067
-21.59277 -18.91933 -18.65089 -17.87699 -17.37677 -16.87877 -16.76072 -16.53637
-16.28073 -15.69760 -15.34476 -15.16790 -15.11851 -14.60595 -14.39727 -14.20614
-13.89954 -13.73974 -13.47551 -13.01359 -12.93003 -12.90741 -12.54883 -12.43179
-12.15668 -12.13192 -12.02490 -11.83893 -11.79205 -11.63671 -11.26988 -11.01040
-10.83497 -10.46377 -9.73620 -9.12572 -8.37820 -8.12842 -5.88718 0.36951
0.50622 1.44852 1.45901 1.58810 2.15834 2.46684 2.80911 3.01459
3.18429 3.43293 3.60635 3.81155 3.91770 3.99788 4.07053 4.17632
4.27488 4.28862 4.35227 4.42413 4.43699 4.46890 4.51341 4.55728
4.59475 4.83562 4.88158 4.94956 4.98658 5.01878 5.03612 5.20373
5.25039 5.38420 5.39578 5.50621 5.59061 5.65820 5.90171 5.97445
6.26059 6.49499 7.00416 7.10358 7.56833 8.07094 8.94882
Molecular weight = 291.16amu
Principal moments of inertia in cm(-1)
A = 0.028779 B = 0.003215 C = 0.003112
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 972.704634 B = 8706.598621 C = 8994.559270
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.054 4.054
3 C -0.167 4.167
4 C -0.079 4.079
5 C -0.227 4.227
6 C 0.112 3.888
7 O -0.331 6.331
8 C 0.038 3.962
9 C 0.104 3.896
10 H 0.060 0.940
11 O -0.557 6.557
12 C 0.124 3.876
13 N -0.576 5.576
14 C -0.281 4.281
15 H 0.015 0.985
16 C 0.011 3.989
17 N -0.948 5.948
18 Si 0.951 3.049
19 H -0.251 1.251
20 H -0.315 1.315
21 H -0.255 1.255
22 C 0.114 3.886
23 C -0.219 4.219
24 C -0.184 4.184
25 C -0.181 4.181
26 H 0.083 0.917
27 H 0.085 0.915
28 H 0.067 0.933
29 H 0.148 0.852
30 H 0.150 0.850
31 H 0.138 0.862
32 H 0.090 0.910
33 H 0.076 0.924
34 H 0.379 0.621
35 H 0.062 0.938
36 H 0.084 0.916
37 H 0.265 0.735
38 H 0.125 0.875
39 H 0.076 0.924
40 H 0.099 0.901
41 H 0.106 0.894
42 H 0.053 0.947
43 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.461 17.671 11.235 23.872
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.054 4.054
3 C -0.185 4.185
4 C -0.096 4.096
5 C -0.246 4.246
6 C 0.067 3.933
7 O -0.245 6.245
8 C -0.037 4.037
9 C 0.042 3.958
10 H 0.078 0.922
11 O -0.363 6.363
12 C -0.002 4.002
13 N -0.296 5.296
14 C -0.410 4.410
15 H 0.032 0.968
16 C -0.187 4.187
17 N -0.589 5.589
18 Si 0.776 3.224
19 H -0.175 1.175
20 H -0.244 1.244
21 H -0.178 1.178
22 C 0.007 3.993
23 C -0.257 4.257
24 C -0.225 4.225
25 C -0.200 4.200
26 H 0.101 0.899
27 H 0.104 0.896
28 H 0.086 0.914
29 H 0.166 0.834
30 H 0.168 0.832
31 H 0.156 0.844
32 H 0.108 0.892
33 H 0.094 0.906
34 H 0.227 0.773
35 H 0.081 0.919
36 H 0.102 0.898
37 H 0.074 0.926
38 H 0.142 0.858
39 H 0.094 0.906
40 H 0.118 0.882
41 H 0.124 0.876
42 H 0.072 0.928
43 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -11.709 16.981 10.699 23.236
hybrid contribution 1.119 -0.200 -0.225 1.159
sum -10.589 16.781 10.475 22.438
Atomic orbital electron populations
1.20866 0.88873 1.03808 1.03424 1.20061 0.97531 0.91836 0.95974
1.21293 0.94358 0.98212 1.04645 1.21301 0.94618 0.97848 0.95883
1.21496 1.01124 0.92192 1.09778 1.19402 0.92376 0.85263 0.96277
1.86141 1.20992 1.28855 1.88473 1.23630 0.77755 0.99150 1.03192
1.22421 0.95956 0.90059 0.87407 0.92205 1.86646 1.79678 1.54526
1.15471 1.21614 0.90574 0.86141 1.01821 1.43453 1.72944 1.12585
1.00625 1.18229 0.92582 1.37567 0.92651 0.96754 1.26492 1.01327
0.95213 0.95679 1.70009 1.25445 1.33375 1.30046 0.85746 0.77702
0.80617 0.78291 1.17514 1.24400 1.17829 1.21530 1.00486 0.86572
0.90711 1.23481 0.96845 1.03335 1.02032 1.23137 0.92887 1.06355
1.00071 1.20528 0.91126 0.99431 1.08899 0.89863 0.89614 0.91362
0.83393 0.83194 0.84392 0.89209 0.90625 0.77277 0.91928 0.89839
0.92598 0.85806 0.90560 0.88227 0.87609 0.92846 0.86009
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.51 10.01 71.24 0.71 -0.80 16
2 C -0.05 -1.07 5.88 -19.88 -0.12 -1.19 16
3 C -0.17 -2.90 9.70 22.28 0.22 -2.68 16
4 C -0.08 -1.43 10.04 22.26 0.22 -1.21 16
5 C -0.23 -5.11 9.04 22.37 0.20 -4.91 16
6 C 0.11 3.09 6.69 22.51 0.15 3.24 16
7 O -0.33 -10.48 10.10 -87.76 -0.89 -11.37 16
8 C 0.04 1.03 4.37 71.98 0.31 1.35 16
9 C 0.10 3.51 3.49 30.60 0.11 3.61 16
10 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16
11 O -0.56 -18.55 12.86 -144.35 -1.86 -20.40 16
12 C 0.12 4.36 5.37 86.38 0.46 4.83 16
13 N -0.58 -25.91 2.01 -678.03 -1.37 -27.28 16
14 C -0.28 -15.80 9.17 84.03 0.77 -15.03 16
15 H 0.01 0.96 8.06 -2.91 -0.02 0.94 16
16 C 0.01 0.65 3.73 84.86 0.32 0.96 16
17 N -0.95 -58.73 13.97 21.65 0.30 -58.42 16
18 Si 0.95 44.51 24.88 68.60 1.71 46.22 16
19 H -0.25 -10.90 5.79 99.48 0.58 -10.32 16
20 H -0.32 -15.22 7.11 99.48 0.71 -14.51 16
21 H -0.25 -11.10 7.11 99.48 0.71 -10.39 16
22 C 0.11 4.52 4.76 44.99 0.21 4.73 16
23 C -0.22 -9.35 6.69 30.62 0.20 -9.15 16
24 C -0.18 -7.31 10.36 30.62 0.32 -6.99 16
25 C -0.18 -4.62 9.64 22.37 0.22 -4.41 16
26 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16
27 H 0.09 0.84 8.08 -2.39 -0.02 0.82 16
28 H 0.07 0.91 8.08 -2.39 -0.02 0.90 16
29 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16
30 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16
31 H 0.14 2.66 6.30 -2.91 -0.02 2.65 16
32 H 0.09 1.85 7.65 -2.39 -0.02 1.84 16
33 H 0.08 1.90 7.67 -2.39 -0.02 1.88 16
34 H 0.38 8.96 9.04 -74.06 -0.67 8.29 16
35 H 0.06 2.26 8.04 -2.39 -0.02 2.24 16
36 H 0.08 2.28 8.07 -2.38 -0.02 2.26 16
37 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16
38 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16
39 H 0.08 3.98 5.08 -2.39 -0.01 3.96 16
40 H 0.10 3.69 7.85 -2.39 -0.02 3.67 16
41 H 0.11 3.42 8.14 -2.38 -0.02 3.40 16
42 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16
43 H 0.12 3.11 8.06 -2.91 -0.02 3.08 16
Total: -1.00 -72.43 349.90 2.41 -70.02
By element:
Atomic # 1 Polarization: 28.67 SS G_CDS: 0.20 Total: 28.87 kcal
Atomic # 6 Polarization: -31.94 SS G_CDS: 4.31 Total: -27.62 kcal
Atomic # 7 Polarization: -84.64 SS G_CDS: -1.06 Total: -85.70 kcal
Atomic # 8 Polarization: -29.03 SS G_CDS: -2.74 Total: -31.77 kcal
Atomic # 14 Polarization: 44.51 SS G_CDS: 1.71 Total: 46.22 kcal
Total: -72.43 2.41 -70.02 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000264308002.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.354 kcal
(2) G-P(sol) polarization free energy of solvation -72.426 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.072 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.017 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.663 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds