Wall clock time and date at job start Tue Mar 31 2020 06:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38284 * 119.97297 * 2 1 4 4 C 1.38249 * 120.11508 * 180.02562 * 3 2 1 5 5 C 1.38167 * 120.05014 * 359.67919 * 4 3 2 6 6 C 1.38710 * 119.94552 * 0.57370 * 5 4 3 7 7 O 1.35898 * 120.05428 * 179.72407 * 6 5 4 8 8 C 1.42899 * 117.00405 * 359.72382 * 7 6 5 9 9 C 1.52996 * 109.47231 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47515 * 55.00349 * 9 8 7 11 11 O 1.42896 * 109.47525 * 294.99759 * 9 8 7 12 12 C 1.53009 * 109.47117 * 174.99948 * 9 8 7 13 13 N 1.46495 * 109.47201 * 184.99969 * 12 9 8 14 14 C 1.36939 * 119.99832 * 90.00390 * 13 12 9 15 15 H 1.07999 * 120.00095 * 304.51469 * 14 13 12 16 16 C 1.38805 * 119.99966 * 124.51130 * 14 13 12 17 17 N 1.31619 * 119.99984 * 164.63314 * 16 14 13 18 18 Si 1.86803 * 120.00365 * 344.63648 * 16 14 13 19 19 H 1.48500 * 109.47312 * 91.86390 * 18 16 14 20 20 H 1.48497 * 109.46973 * 211.86703 * 18 16 14 21 21 H 1.48506 * 109.46604 * 331.86408 * 18 16 14 22 22 C 1.46492 * 120.00100 * 270.00015 * 13 12 9 23 23 C 1.53001 * 117.49832 * 183.08683 * 22 13 12 24 24 C 1.53004 * 117.49700 * 114.42771 * 22 13 12 25 25 C 1.38123 * 119.97344 * 179.97438 * 2 1 3 26 26 H 1.09000 * 109.47369 * 270.02337 * 1 2 3 27 27 H 1.08996 * 109.47088 * 30.02453 * 1 2 3 28 28 H 1.09001 * 109.47250 * 150.02311 * 1 2 3 29 29 H 1.08000 * 119.94152 * 359.97438 * 3 2 1 30 30 H 1.07994 * 119.97438 * 179.97438 * 4 3 2 31 31 H 1.08006 * 120.02733 * 180.29856 * 5 4 3 32 32 H 1.09003 * 109.46814 * 59.99899 * 8 7 6 33 33 H 1.09002 * 109.47187 * 300.00130 * 8 7 6 34 34 H 0.96693 * 114.00421 * 300.00567 * 11 9 8 35 35 H 1.09000 * 109.47095 * 305.00791 * 12 9 8 36 36 H 1.09007 * 109.46629 * 65.00081 * 12 9 8 37 37 H 0.97002 * 120.00637 * 180.02562 * 17 16 14 38 38 H 1.09001 * 115.55647 * 328.75625 * 22 13 12 39 39 H 1.08994 * 117.49861 * 359.97438 * 23 22 13 40 40 H 1.08998 * 117.50305 * 145.02550 * 23 22 13 41 41 H 1.09009 * 117.49711 * 214.97733 * 24 22 13 42 42 H 1.08994 * 117.49987 * 359.97438 * 24 22 13 43 43 H 1.07998 * 120.02741 * 0.02813 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0071 0.0056 6 6 3.5846 -1.1958 0.0003 7 8 4.2658 -2.3717 0.0007 8 6 5.6927 -2.2949 0.0006 9 6 6.2795 -3.7079 0.0017 10 1 5.8746 -4.2702 -0.8397 11 8 5.9366 -4.3652 1.2232 12 6 7.8023 -3.6278 -0.1242 13 7 8.3543 -4.9796 -0.2432 14 6 8.5114 -5.5486 -1.4788 15 1 7.6671 -5.6297 -2.1473 16 6 9.7559 -6.0211 -1.8720 17 7 9.8566 -6.8273 -2.9075 18 14 11.2879 -5.5130 -0.9316 19 1 11.5671 -6.5081 0.1347 20 1 12.4423 -5.4490 -1.8635 21 1 11.0720 -4.1777 -0.3184 22 6 8.7381 -5.7226 0.9596 23 6 9.3751 -7.1001 0.7658 24 6 7.9426 -6.9863 1.2932 25 6 2.1970 -1.1965 0.0005 26 1 -0.3634 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5142 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6564 2.1324 -0.0004 30 1 4.1175 2.1382 -0.0010 31 1 5.3552 0.0102 0.0101 32 1 6.0279 -1.7619 0.8904 33 1 6.0279 -1.7626 -0.8896 34 1 6.2652 -3.9192 2.0157 35 1 8.0637 -3.0492 -1.0102 36 1 8.2150 -3.1434 0.7609 37 1 10.7262 -7.1579 -3.1822 38 1 9.0932 -5.1167 1.7932 39 1 9.5082 -7.4536 -0.2566 40 1 10.1490 -7.4006 1.4721 41 1 7.7747 -7.2119 2.3464 42 1 7.1335 -7.2645 0.6180 43 1 1.6571 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264308002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:21 Heat of formation + Delta-G solvation = -34.663129 kcal Electronic energy + Delta-G solvation = -23082.379677 eV Core-core repulsion = 19707.720610 eV Total energy + Delta-G solvation = -3374.659067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15796 -39.55635 -38.66762 -37.43114 -34.73204 -33.68358 -33.39793 -31.79635 -30.36585 -27.93993 -27.29224 -25.24509 -23.52344 -23.18533 -22.77665 -21.88067 -21.59277 -18.91933 -18.65089 -17.87699 -17.37677 -16.87877 -16.76072 -16.53637 -16.28073 -15.69760 -15.34476 -15.16790 -15.11851 -14.60595 -14.39727 -14.20614 -13.89954 -13.73974 -13.47551 -13.01359 -12.93003 -12.90741 -12.54883 -12.43179 -12.15668 -12.13192 -12.02490 -11.83893 -11.79205 -11.63671 -11.26988 -11.01040 -10.83497 -10.46377 -9.73620 -9.12572 -8.37820 -8.12842 -5.88718 0.36951 0.50622 1.44852 1.45901 1.58810 2.15834 2.46684 2.80911 3.01459 3.18429 3.43293 3.60635 3.81155 3.91770 3.99788 4.07053 4.17632 4.27488 4.28862 4.35227 4.42413 4.43699 4.46890 4.51341 4.55728 4.59475 4.83562 4.88158 4.94956 4.98658 5.01878 5.03612 5.20373 5.25039 5.38420 5.39578 5.50621 5.59061 5.65820 5.90171 5.97445 6.26059 6.49499 7.00416 7.10358 7.56833 8.07094 8.94882 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.028779 B = 0.003215 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.704634 B = 8706.598621 C = 8994.559270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.054 4.054 3 C -0.167 4.167 4 C -0.079 4.079 5 C -0.227 4.227 6 C 0.112 3.888 7 O -0.331 6.331 8 C 0.038 3.962 9 C 0.104 3.896 10 H 0.060 0.940 11 O -0.557 6.557 12 C 0.124 3.876 13 N -0.576 5.576 14 C -0.281 4.281 15 H 0.015 0.985 16 C 0.011 3.989 17 N -0.948 5.948 18 Si 0.951 3.049 19 H -0.251 1.251 20 H -0.315 1.315 21 H -0.255 1.255 22 C 0.114 3.886 23 C -0.219 4.219 24 C -0.184 4.184 25 C -0.181 4.181 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.138 0.862 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.379 0.621 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.265 0.735 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.053 0.947 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.461 17.671 11.235 23.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.054 4.054 3 C -0.185 4.185 4 C -0.096 4.096 5 C -0.246 4.246 6 C 0.067 3.933 7 O -0.245 6.245 8 C -0.037 4.037 9 C 0.042 3.958 10 H 0.078 0.922 11 O -0.363 6.363 12 C -0.002 4.002 13 N -0.296 5.296 14 C -0.410 4.410 15 H 0.032 0.968 16 C -0.187 4.187 17 N -0.589 5.589 18 Si 0.776 3.224 19 H -0.175 1.175 20 H -0.244 1.244 21 H -0.178 1.178 22 C 0.007 3.993 23 C -0.257 4.257 24 C -0.225 4.225 25 C -0.200 4.200 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.166 0.834 30 H 0.168 0.832 31 H 0.156 0.844 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.227 0.773 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.142 0.858 39 H 0.094 0.906 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.072 0.928 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.709 16.981 10.699 23.236 hybrid contribution 1.119 -0.200 -0.225 1.159 sum -10.589 16.781 10.475 22.438 Atomic orbital electron populations 1.20866 0.88873 1.03808 1.03424 1.20061 0.97531 0.91836 0.95974 1.21293 0.94358 0.98212 1.04645 1.21301 0.94618 0.97848 0.95883 1.21496 1.01124 0.92192 1.09778 1.19402 0.92376 0.85263 0.96277 1.86141 1.20992 1.28855 1.88473 1.23630 0.77755 0.99150 1.03192 1.22421 0.95956 0.90059 0.87407 0.92205 1.86646 1.79678 1.54526 1.15471 1.21614 0.90574 0.86141 1.01821 1.43453 1.72944 1.12585 1.00625 1.18229 0.92582 1.37567 0.92651 0.96754 1.26492 1.01327 0.95213 0.95679 1.70009 1.25445 1.33375 1.30046 0.85746 0.77702 0.80617 0.78291 1.17514 1.24400 1.17829 1.21530 1.00486 0.86572 0.90711 1.23481 0.96845 1.03335 1.02032 1.23137 0.92887 1.06355 1.00071 1.20528 0.91126 0.99431 1.08899 0.89863 0.89614 0.91362 0.83393 0.83194 0.84392 0.89209 0.90625 0.77277 0.91928 0.89839 0.92598 0.85806 0.90560 0.88227 0.87609 0.92846 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.01 71.24 0.71 -0.80 16 2 C -0.05 -1.07 5.88 -19.88 -0.12 -1.19 16 3 C -0.17 -2.90 9.70 22.28 0.22 -2.68 16 4 C -0.08 -1.43 10.04 22.26 0.22 -1.21 16 5 C -0.23 -5.11 9.04 22.37 0.20 -4.91 16 6 C 0.11 3.09 6.69 22.51 0.15 3.24 16 7 O -0.33 -10.48 10.10 -87.76 -0.89 -11.37 16 8 C 0.04 1.03 4.37 71.98 0.31 1.35 16 9 C 0.10 3.51 3.49 30.60 0.11 3.61 16 10 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 11 O -0.56 -18.55 12.86 -144.35 -1.86 -20.40 16 12 C 0.12 4.36 5.37 86.38 0.46 4.83 16 13 N -0.58 -25.91 2.01 -678.03 -1.37 -27.28 16 14 C -0.28 -15.80 9.17 84.03 0.77 -15.03 16 15 H 0.01 0.96 8.06 -2.91 -0.02 0.94 16 16 C 0.01 0.65 3.73 84.86 0.32 0.96 16 17 N -0.95 -58.73 13.97 21.65 0.30 -58.42 16 18 Si 0.95 44.51 24.88 68.60 1.71 46.22 16 19 H -0.25 -10.90 5.79 99.48 0.58 -10.32 16 20 H -0.32 -15.22 7.11 99.48 0.71 -14.51 16 21 H -0.25 -11.10 7.11 99.48 0.71 -10.39 16 22 C 0.11 4.52 4.76 44.99 0.21 4.73 16 23 C -0.22 -9.35 6.69 30.62 0.20 -9.15 16 24 C -0.18 -7.31 10.36 30.62 0.32 -6.99 16 25 C -0.18 -4.62 9.64 22.37 0.22 -4.41 16 26 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.09 0.84 8.08 -2.39 -0.02 0.82 16 28 H 0.07 0.91 8.08 -2.39 -0.02 0.90 16 29 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 30 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 31 H 0.14 2.66 6.30 -2.91 -0.02 2.65 16 32 H 0.09 1.85 7.65 -2.39 -0.02 1.84 16 33 H 0.08 1.90 7.67 -2.39 -0.02 1.88 16 34 H 0.38 8.96 9.04 -74.06 -0.67 8.29 16 35 H 0.06 2.26 8.04 -2.39 -0.02 2.24 16 36 H 0.08 2.28 8.07 -2.38 -0.02 2.26 16 37 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 39 H 0.08 3.98 5.08 -2.39 -0.01 3.96 16 40 H 0.10 3.69 7.85 -2.39 -0.02 3.67 16 41 H 0.11 3.42 8.14 -2.38 -0.02 3.40 16 42 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.12 3.11 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -72.43 349.90 2.41 -70.02 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: 0.20 Total: 28.87 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 4.31 Total: -27.62 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -1.06 Total: -85.70 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -2.74 Total: -31.77 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.71 Total: 46.22 kcal Total: -72.43 2.41 -70.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264308002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.354 kcal (2) G-P(sol) polarization free energy of solvation -72.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds