Wall clock time and date at job start Tue Mar 31 2020 07:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00342 * 2 1 4 4 C 1.52997 * 109.47282 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47069 * 300.00255 * 3 2 1 6 6 O 1.21281 * 120.00276 * 145.17703 * 5 3 2 7 7 N 1.34775 * 119.99723 * 325.16885 * 5 3 2 8 8 C 1.46506 * 119.99816 * 179.72783 * 7 5 3 9 9 C 1.53001 * 109.47148 * 180.27943 * 8 7 5 10 10 C 1.52991 * 109.47285 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.47250 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99820 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99734 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99399 * 180.02562 * 13 11 10 15 15 Si 1.86790 * 120.00318 * 359.97438 * 13 11 10 16 16 H 1.48509 * 109.46959 * 90.00107 * 15 13 11 17 17 H 1.48503 * 109.47493 * 210.00023 * 15 13 11 18 18 H 1.48498 * 109.47470 * 330.00418 * 15 13 11 19 19 C 1.50709 * 109.46661 * 59.99509 * 3 2 1 20 20 C 1.38230 * 120.00263 * 281.64660 * 19 3 2 21 21 C 1.38236 * 119.99798 * 179.79396 * 20 19 3 22 22 C 1.38234 * 120.00128 * 0.43172 * 21 20 19 23 23 C 1.38229 * 120.00018 * 359.81871 * 22 21 20 24 24 C 1.38238 * 119.99620 * 101.91737 * 19 3 2 25 25 H 1.09003 * 109.46893 * 60.00132 * 1 2 3 26 26 H 1.08999 * 109.47267 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47680 * 300.00054 * 1 2 3 28 28 H 1.09003 * 109.46835 * 179.97438 * 4 3 2 29 29 H 1.08994 * 109.47350 * 300.00015 * 4 3 2 30 30 H 1.09002 * 109.47005 * 60.00766 * 4 3 2 31 31 H 0.96997 * 120.00208 * 0.02562 * 7 5 3 32 32 H 1.09000 * 109.46930 * 300.27885 * 8 7 5 33 33 H 1.08992 * 109.47220 * 60.28151 * 8 7 5 34 34 H 1.09001 * 109.46709 * 300.00092 * 9 8 7 35 35 H 1.09006 * 109.47028 * 59.99786 * 9 8 7 36 36 H 1.09001 * 109.47423 * 299.99778 * 10 9 8 37 37 H 1.09006 * 109.47160 * 59.99992 * 10 9 8 38 38 H 0.96999 * 119.99913 * 180.02562 * 14 13 11 39 39 H 1.07997 * 119.99926 * 359.97438 * 20 19 3 40 40 H 1.07998 * 119.99815 * 180.27344 * 21 20 19 41 41 H 1.07996 * 120.00028 * 179.83777 * 22 21 20 42 42 H 1.07998 * 120.00085 * 179.97438 * 23 22 21 43 43 H 1.08006 * 120.00189 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 1.5656 2.0533 -1.2304 6 8 1.3741 3.2497 -1.1768 7 7 1.3808 1.3926 -2.3905 8 6 0.9428 2.1187 -3.5852 9 6 0.8042 1.1410 -4.7539 10 6 0.3461 1.8991 -6.0014 11 6 0.2103 0.9362 -7.1528 12 1 0.4284 -0.1117 -7.0089 13 6 -0.1925 1.3932 -8.3897 14 7 -0.3115 0.5528 -9.3943 15 14 -0.5705 3.2055 -8.6383 16 1 0.6653 3.9164 -9.0540 17 1 -1.6060 3.3553 -9.6921 18 1 -1.0712 3.7858 -7.3663 19 6 1.5654 2.0533 1.2305 20 6 0.3045 2.6176 1.2783 21 6 -0.1050 3.2999 2.4087 22 6 0.7498 3.4255 3.4877 23 6 2.0126 2.8657 3.4379 24 6 2.4206 2.1798 2.3092 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.9788 2.1804 0.0002 29 1 3.8567 0.6438 0.8908 30 1 3.8574 0.6436 -0.8892 31 1 1.5337 0.4357 -2.4333 32 1 -0.0201 2.5911 -3.3906 33 1 1.6783 2.8828 -3.8360 34 1 1.7671 0.6686 -4.9485 35 1 0.0686 0.3767 -4.5031 36 1 -0.6168 2.3712 -5.8066 37 1 1.0815 2.6636 -6.2524 38 1 -0.5945 0.8743 -10.2646 39 1 -0.3619 2.5228 0.4337 40 1 -1.0918 3.7369 2.4477 41 1 0.4308 3.9608 4.3698 42 1 2.6806 2.9643 4.2808 43 1 3.4073 1.7423 2.2704 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264386738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:46 Heat of formation + Delta-G solvation = -60.833141 kcal Electronic energy + Delta-G solvation = -23264.735384 eV Core-core repulsion = 19888.941500 eV Total energy + Delta-G solvation = -3375.793884 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.09822 -38.84625 -37.53182 -35.62170 -33.31358 -33.21184 -31.46389 -31.19408 -29.76198 -27.40194 -26.56719 -25.02271 -23.12219 -22.57078 -21.50644 -20.65085 -19.72891 -17.94412 -17.60393 -16.79869 -16.38352 -15.79583 -15.61254 -15.24737 -14.78977 -14.61886 -14.48401 -14.12341 -13.94454 -13.79931 -13.21640 -12.89285 -12.72650 -12.69918 -12.59966 -12.13392 -12.06054 -11.98760 -11.90508 -11.29475 -11.16613 -11.10462 -10.91252 -10.48006 -10.14573 -9.96323 -9.77547 -9.37308 -9.24514 -9.08037 -9.04727 -8.88562 -8.57306 -6.07997 -4.06811 1.05868 1.21361 2.51173 3.08339 3.29604 3.37239 3.41162 3.42536 3.69708 4.24186 4.42633 4.49190 4.72494 4.78107 4.85330 4.89890 5.15531 5.18926 5.22118 5.25957 5.32027 5.40441 5.42256 5.51168 5.55449 5.60802 5.71388 5.79956 5.81123 5.96980 6.22115 6.28245 6.30518 6.33133 6.40608 6.59051 6.72418 6.75438 6.76298 7.20006 7.33338 7.56460 7.74376 8.20113 8.48630 8.95964 9.54149 11.05268 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.003064 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.992268 B = 9136.131086 C = 9464.851352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.362 6.362 3 C 0.142 3.858 4 C -0.139 4.139 5 C 0.490 3.510 6 O -0.530 6.530 7 N -0.716 5.716 8 C 0.112 3.888 9 C -0.113 4.113 10 C -0.011 4.011 11 C -0.522 4.522 12 H 0.072 0.928 13 C 0.067 3.933 14 N -0.903 5.903 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.101 4.101 20 C -0.084 4.084 21 C -0.124 4.124 22 C -0.113 4.113 23 C -0.127 4.127 24 C -0.099 4.099 25 H 0.050 0.950 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.405 0.595 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.018 0.982 37 H 0.014 0.986 38 H 0.263 0.737 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.323 1.551 26.644 27.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.280 6.280 3 C 0.099 3.901 4 C -0.196 4.196 5 C 0.273 3.727 6 O -0.406 6.406 7 N -0.368 5.368 8 C -0.010 4.010 9 C -0.151 4.151 10 C -0.049 4.049 11 C -0.560 4.560 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.541 5.541 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.189 1.189 19 C -0.102 4.102 20 C -0.102 4.102 21 C -0.142 4.142 22 C -0.131 4.131 23 C -0.145 4.145 24 C -0.117 4.117 25 H 0.068 0.932 26 H 0.113 0.887 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.240 0.760 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.032 0.968 38 H 0.073 0.927 39 H 0.137 0.863 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.239 2.237 26.456 26.887 hybrid contribution -0.435 0.703 -0.429 0.931 sum 3.804 2.940 26.027 26.468 Atomic orbital electron populations 1.23128 0.80605 1.03640 1.01150 1.88029 1.20426 1.24921 1.94652 1.20574 0.96152 0.83187 0.90165 1.21838 0.89843 1.03671 1.04227 1.20995 0.78150 0.88296 0.85215 1.90731 1.50268 1.14528 1.85102 1.46235 1.67883 1.12721 1.09947 1.21700 0.99746 0.95782 0.83796 1.21706 1.01647 0.97742 0.93997 1.19500 0.96119 0.96321 0.92910 1.21095 1.45897 0.95950 0.93083 0.90975 1.25028 0.94829 0.97667 0.95944 1.69913 1.47835 1.34725 1.01675 0.86777 0.78457 0.85867 0.78193 1.20230 1.21352 1.18947 1.19806 0.95212 0.99926 0.95210 1.21077 0.95549 0.95856 0.97699 1.21125 1.00048 0.99492 0.93579 1.21188 0.94184 0.99293 0.98464 1.21114 0.96515 0.98754 0.98108 1.21099 0.99454 0.98403 0.92735 0.93171 0.88719 0.92907 0.90038 0.90098 0.90632 0.75992 0.91800 0.91658 0.92011 0.92070 0.96361 0.96758 0.92680 0.86278 0.85926 0.86061 0.85889 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.53 101.05 0.96 1.07 16 2 O -0.36 -4.10 9.67 -35.23 -0.34 -4.45 16 3 C 0.14 1.67 1.00 -92.92 -0.09 1.58 16 4 C -0.14 -1.32 7.73 37.16 0.29 -1.04 16 5 C 0.49 7.09 4.83 -10.99 -0.05 7.04 16 6 O -0.53 -9.43 15.14 5.56 0.08 -9.35 16 7 N -0.72 -10.04 4.68 -60.29 -0.28 -10.32 16 8 C 0.11 1.85 5.67 -4.04 -0.02 1.82 16 9 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 10 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 11 C -0.52 -14.66 9.66 -34.44 -0.33 -15.00 16 12 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 13 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 14 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 15 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 18 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 19 C -0.10 -1.19 4.34 -104.62 -0.45 -1.65 16 20 C -0.08 -1.01 6.26 -39.59 -0.25 -1.26 16 21 C -0.12 -1.29 10.05 -39.58 -0.40 -1.68 16 22 C -0.11 -1.03 10.05 -39.59 -0.40 -1.43 16 23 C -0.13 -1.13 10.05 -39.58 -0.40 -1.53 16 24 C -0.10 -0.99 9.12 -39.58 -0.36 -1.35 16 25 H 0.05 0.55 6.62 -51.93 -0.34 0.21 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.52 5.57 -51.93 -0.29 0.24 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.62 6.74 -51.93 -0.35 0.27 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.40 4.99 7.90 -40.82 -0.32 4.67 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 37 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.12 1.52 6.42 -52.49 -0.34 1.18 16 40 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 43 H 0.13 1.01 5.96 -52.48 -0.31 0.70 16 LS Contribution 346.21 15.07 5.22 5.22 Total: -1.00 -32.91 346.21 -7.61 -40.53 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.54 Total: 2.44 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -1.86 Total: -14.18 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.49 Total: -37.23 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.26 Total: -13.79 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.91 -7.61 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264386738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.308 kcal (2) G-P(sol) polarization free energy of solvation -32.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds