Wall clock time and date at job start Tue Mar 31 2020 07:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00342 * 2 1 4 4 C 1.52997 * 109.47282 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47069 * 300.00255 * 3 2 1 6 6 O 1.21281 * 120.00276 * 145.17703 * 5 3 2 7 7 N 1.34775 * 119.99723 * 325.16885 * 5 3 2 8 8 C 1.46506 * 119.99816 * 179.72783 * 7 5 3 9 9 C 1.53001 * 109.47148 * 180.27943 * 8 7 5 10 10 C 1.52991 * 109.47285 * 179.97438 * 9 8 7 11 11 C 1.50705 * 109.47250 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99820 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99734 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99399 * 180.02562 * 13 11 10 15 15 Si 1.86790 * 120.00318 * 359.97438 * 13 11 10 16 16 H 1.48509 * 109.46959 * 90.00107 * 15 13 11 17 17 H 1.48503 * 109.47493 * 210.00023 * 15 13 11 18 18 H 1.48498 * 109.47470 * 330.00418 * 15 13 11 19 19 C 1.50709 * 109.46661 * 59.99509 * 3 2 1 20 20 C 1.38230 * 120.00263 * 281.64660 * 19 3 2 21 21 C 1.38236 * 119.99798 * 179.79396 * 20 19 3 22 22 C 1.38234 * 120.00128 * 0.43172 * 21 20 19 23 23 C 1.38229 * 120.00018 * 359.81871 * 22 21 20 24 24 C 1.38238 * 119.99620 * 101.91737 * 19 3 2 25 25 H 1.09003 * 109.46893 * 60.00132 * 1 2 3 26 26 H 1.08999 * 109.47267 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47680 * 300.00054 * 1 2 3 28 28 H 1.09003 * 109.46835 * 179.97438 * 4 3 2 29 29 H 1.08994 * 109.47350 * 300.00015 * 4 3 2 30 30 H 1.09002 * 109.47005 * 60.00766 * 4 3 2 31 31 H 0.96997 * 120.00208 * 0.02562 * 7 5 3 32 32 H 1.09000 * 109.46930 * 300.27885 * 8 7 5 33 33 H 1.08992 * 109.47220 * 60.28151 * 8 7 5 34 34 H 1.09001 * 109.46709 * 300.00092 * 9 8 7 35 35 H 1.09006 * 109.47028 * 59.99786 * 9 8 7 36 36 H 1.09001 * 109.47423 * 299.99778 * 10 9 8 37 37 H 1.09006 * 109.47160 * 59.99992 * 10 9 8 38 38 H 0.96999 * 119.99913 * 180.02562 * 14 13 11 39 39 H 1.07997 * 119.99926 * 359.97438 * 20 19 3 40 40 H 1.07998 * 119.99815 * 180.27344 * 21 20 19 41 41 H 1.07996 * 120.00028 * 179.83777 * 22 21 20 42 42 H 1.07998 * 120.00085 * 179.97438 * 23 22 21 43 43 H 1.08006 * 120.00189 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 1.5656 2.0533 -1.2304 6 8 1.3741 3.2497 -1.1768 7 7 1.3808 1.3926 -2.3905 8 6 0.9428 2.1187 -3.5852 9 6 0.8042 1.1410 -4.7539 10 6 0.3461 1.8991 -6.0014 11 6 0.2103 0.9362 -7.1528 12 1 0.4284 -0.1117 -7.0089 13 6 -0.1925 1.3932 -8.3897 14 7 -0.3115 0.5528 -9.3943 15 14 -0.5705 3.2055 -8.6383 16 1 0.6653 3.9164 -9.0540 17 1 -1.6060 3.3553 -9.6921 18 1 -1.0712 3.7858 -7.3663 19 6 1.5654 2.0533 1.2305 20 6 0.3045 2.6176 1.2783 21 6 -0.1050 3.2999 2.4087 22 6 0.7498 3.4255 3.4877 23 6 2.0126 2.8657 3.4379 24 6 2.4206 2.1798 2.3092 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 3.9788 2.1804 0.0002 29 1 3.8567 0.6438 0.8908 30 1 3.8574 0.6436 -0.8892 31 1 1.5337 0.4357 -2.4333 32 1 -0.0201 2.5911 -3.3906 33 1 1.6783 2.8828 -3.8360 34 1 1.7671 0.6686 -4.9485 35 1 0.0686 0.3767 -4.5031 36 1 -0.6168 2.3712 -5.8066 37 1 1.0815 2.6636 -6.2524 38 1 -0.5945 0.8743 -10.2646 39 1 -0.3619 2.5228 0.4337 40 1 -1.0918 3.7369 2.4477 41 1 0.4308 3.9608 4.3698 42 1 2.6806 2.9643 4.2808 43 1 3.4073 1.7423 2.2704 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264386738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:31:45 Heat of formation + Delta-G solvation = -82.077558 kcal Electronic energy + Delta-G solvation = -23265.656611 eV Core-core repulsion = 19888.941500 eV Total energy + Delta-G solvation = -3376.715111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.05736 -39.78743 -38.44437 -37.07643 -35.16649 -34.03660 -33.27600 -31.93813 -30.57516 -29.07426 -27.37681 -26.09476 -24.57037 -23.37422 -22.53043 -22.25412 -20.85928 -19.14808 -18.80517 -18.36115 -17.35029 -16.90498 -16.62390 -16.36160 -16.27256 -15.61805 -15.53143 -15.41172 -15.10773 -14.79854 -14.63161 -14.14300 -13.84337 -13.77327 -13.63718 -13.43952 -13.32901 -12.84707 -12.77947 -12.75056 -12.71323 -12.17122 -11.90862 -11.90347 -11.79339 -11.62677 -11.35759 -11.34204 -10.77669 -10.49954 -10.16905 -9.82564 -9.77913 -8.30709 -6.34758 0.30031 0.46845 1.35633 1.37176 1.38722 1.48858 2.01429 2.34966 2.56120 2.92295 3.04954 3.39843 3.55593 3.86393 4.04705 4.07062 4.11882 4.15308 4.24014 4.35360 4.39816 4.45924 4.53873 4.59552 4.68415 4.71419 4.77515 4.83840 4.85328 4.99014 5.00191 5.08257 5.10790 5.30773 5.44596 5.50464 5.52389 5.55954 5.57657 5.63008 5.80046 6.05236 6.25969 6.45086 6.73290 7.07032 7.30056 8.85804 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.003064 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.992268 B = 9136.131086 C = 9464.851352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.363 6.363 3 C 0.146 3.854 4 C -0.139 4.139 5 C 0.490 3.510 6 O -0.565 6.565 7 N -0.710 5.710 8 C 0.126 3.874 9 C -0.100 4.100 10 C -0.011 4.011 11 C -0.531 4.531 12 H 0.037 0.963 13 C 0.005 3.995 14 N -0.950 5.950 15 Si 0.948 3.052 16 H -0.267 1.267 17 H -0.284 1.284 18 H -0.248 1.248 19 C -0.120 4.120 20 C -0.106 4.106 21 C -0.137 4.137 22 C -0.115 4.115 23 C -0.127 4.127 24 C -0.105 4.105 25 H 0.037 0.963 26 H 0.114 0.886 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.414 0.586 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.266 0.734 39 H 0.101 0.899 40 H 0.134 0.866 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.093 2.580 29.056 29.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.282 6.282 3 C 0.104 3.896 4 C -0.196 4.196 5 C 0.276 3.724 6 O -0.444 6.444 7 N -0.361 5.361 8 C 0.002 3.998 9 C -0.138 4.138 10 C -0.049 4.049 11 C -0.569 4.569 12 H 0.056 0.944 13 C -0.192 4.192 14 N -0.591 5.591 15 Si 0.771 3.229 16 H -0.192 1.192 17 H -0.210 1.210 18 H -0.172 1.172 19 C -0.121 4.121 20 C -0.124 4.124 21 C -0.155 4.155 22 C -0.132 4.132 23 C -0.145 4.145 24 C -0.123 4.123 25 H 0.056 0.944 26 H 0.132 0.868 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.097 0.903 31 H 0.251 0.749 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.119 0.881 40 H 0.152 0.848 41 H 0.166 0.834 42 H 0.171 0.829 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 5.017 3.239 28.891 29.502 hybrid contribution -0.682 0.304 -1.134 1.357 sum 4.335 3.543 27.757 28.316 Atomic orbital electron populations 1.23205 0.80181 1.04693 1.00587 1.88026 1.20909 1.24703 1.94527 1.20579 0.97402 0.82955 0.88713 1.21912 0.88028 1.04108 1.05563 1.21562 0.77034 0.87995 0.85804 1.90706 1.51785 1.16242 1.85688 1.46094 1.67642 1.13080 1.09333 1.21354 0.99448 0.95048 0.83918 1.21479 1.01670 0.97661 0.92964 1.19455 0.96526 0.95773 0.93114 1.21456 1.45145 0.95420 0.94899 0.94441 1.25982 0.94798 1.02750 0.95655 1.70058 1.49415 1.37199 1.02396 0.85696 0.78637 0.79778 0.78780 1.19203 1.20985 1.17192 1.19926 0.95590 1.00771 0.95829 1.21080 0.95909 0.97439 0.97983 1.21367 1.01061 0.99452 0.93617 1.21553 0.94066 0.98850 0.98776 1.21524 0.96839 0.97556 0.98558 1.21408 1.00043 0.98412 0.92455 0.94430 0.86800 0.92854 0.90050 0.87816 0.90311 0.74898 0.92372 0.92137 0.91723 0.91813 0.96108 0.96188 0.92475 0.88123 0.84805 0.83435 0.82944 0.83304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.53 113.37 1.08 1.26 16 2 O -0.36 -7.81 9.67 -148.98 -1.44 -9.25 16 3 C 0.15 3.29 1.00 -12.29 -0.01 3.28 16 4 C -0.14 -2.39 7.73 71.98 0.56 -1.83 16 5 C 0.49 14.03 4.83 87.66 0.42 14.46 16 6 O -0.57 -20.23 15.14 -3.03 -0.05 -20.28 16 7 N -0.71 -19.47 4.68 -463.06 -2.17 -21.64 16 8 C 0.13 4.05 5.67 86.38 0.49 4.54 16 9 C -0.10 -3.65 5.27 30.59 0.16 -3.49 16 10 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 11 C -0.53 -30.25 9.66 25.60 0.25 -30.00 16 12 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 13 C 0.01 0.30 5.47 84.66 0.46 0.76 16 14 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 15 Si 0.95 44.43 27.47 68.60 1.88 46.32 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 17 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 19 C -0.12 -2.72 4.34 -19.86 -0.09 -2.81 16 20 C -0.11 -2.55 6.26 22.27 0.14 -2.41 16 21 C -0.14 -2.71 10.05 22.27 0.22 -2.49 16 22 C -0.11 -1.81 10.05 22.27 0.22 -1.59 16 23 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 24 C -0.11 -1.87 9.12 22.27 0.20 -1.66 16 25 H 0.04 0.83 6.62 -2.39 -0.02 0.81 16 26 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.05 1.05 5.57 -2.39 -0.01 1.04 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.10 1.29 6.74 -2.39 -0.02 1.27 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.41 9.85 7.90 -92.71 -0.73 9.12 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.06 2.28 8.14 -2.38 -0.02 2.27 16 36 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 37 H 0.02 0.89 7.57 -2.38 -0.02 0.87 16 38 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 39 H 0.10 2.69 6.42 -2.91 -0.02 2.67 16 40 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 42 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 43 H 0.15 1.88 5.96 -2.91 -0.02 1.86 16 Total: -1.00 -71.74 346.21 3.20 -68.54 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.22 Total: 19.49 kcal Atomic # 6 Polarization: -28.48 SS G_CDS: 4.46 Total: -24.02 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -1.87 Total: -80.81 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -1.49 Total: -29.53 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.32 kcal Total: -71.74 3.20 -68.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264386738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.535 kcal (2) G-P(sol) polarization free energy of solvation -71.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds