Wall clock time and date at job start Tue Mar 31 2020 06:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38291 * 119.94636 * 2 1 4 4 C 1.38123 * 120.05427 * 180.25404 * 3 2 1 5 5 C 1.38746 * 119.94546 * 359.49604 * 4 3 2 6 6 O 1.35899 * 120.05727 * 180.27584 * 5 4 3 7 7 C 1.42897 * 116.99910 * 359.97438 * 6 5 4 8 8 C 1.53005 * 109.47191 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46888 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46919 * 180.02562 * 9 8 7 11 11 O 1.21295 * 120.00466 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00095 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00213 * 359.97438 * 12 10 9 14 14 C 1.37096 * 120.00020 * 179.97438 * 12 10 9 15 15 H 1.08006 * 120.00338 * 22.40535 * 14 12 10 16 16 C 1.38954 * 120.00060 * 202.40207 * 14 12 10 17 17 N 1.31417 * 119.99851 * 11.60663 * 16 14 12 18 18 Si 1.86802 * 120.00082 * 191.60809 * 16 14 12 19 19 H 1.48495 * 109.47020 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47198 * 119.99968 * 18 16 14 21 21 H 1.48497 * 109.47173 * 240.00033 * 18 16 14 22 22 C 1.38709 * 119.88969 * 0.25277 * 5 4 3 23 23 C 1.38162 * 119.94486 * 0.02562 * 22 5 4 24 24 C 1.50700 * 119.97582 * 180.02562 * 23 22 5 25 25 H 1.08997 * 109.46985 * 270.24943 * 1 2 3 26 26 H 1.09002 * 109.47285 * 30.25041 * 1 2 3 27 27 H 1.09005 * 109.47444 * 150.24677 * 1 2 3 28 28 H 1.07995 * 119.97150 * 0.03092 * 3 2 1 29 29 H 1.08006 * 120.02445 * 179.77341 * 4 3 2 30 30 H 1.08996 * 109.47862 * 300.00358 * 7 6 5 31 31 H 1.09008 * 109.46742 * 60.00350 * 7 6 5 32 32 H 1.09002 * 109.47057 * 300.00119 * 8 7 6 33 33 H 1.08994 * 109.46885 * 60.00321 * 8 7 6 34 34 H 1.09004 * 109.47387 * 299.99578 * 9 8 7 35 35 H 1.08994 * 109.47584 * 60.00150 * 9 8 7 36 36 H 1.08999 * 109.47154 * 92.15608 * 13 12 10 37 37 H 1.09000 * 109.47097 * 212.16129 * 13 12 10 38 38 H 1.09000 * 109.46771 * 332.15661 * 13 12 10 39 39 H 0.97000 * 119.99414 * 179.97438 * 17 16 14 40 40 H 1.08006 * 120.02725 * 180.02562 * 22 5 4 41 41 H 1.09003 * 109.47403 * 89.99346 * 24 23 22 42 42 H 1.08998 * 109.47376 * 209.99368 * 24 23 22 43 43 H 1.09000 * 109.47093 * 329.99981 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2009 -0.0053 5 6 4.2734 0.0000 -0.0001 6 8 5.6324 -0.0001 0.0004 7 6 6.2811 1.2731 -0.0052 8 6 7.7980 1.0726 -0.0044 9 6 8.4926 2.4359 -0.0099 10 6 9.9865 2.2384 -0.0097 11 8 10.4502 1.1176 -0.0052 12 7 10.8076 3.3072 -0.0135 13 6 10.2477 4.6610 -0.0184 14 6 12.1667 3.1276 -0.0129 15 1 12.5888 2.1983 -0.3660 16 6 13.0013 4.1411 0.4421 17 7 12.4949 5.1728 1.0794 18 14 14.8431 4.0372 0.1479 19 1 15.1570 2.7858 -0.5873 20 1 15.2828 5.2062 -0.6555 21 1 15.5535 4.0373 1.4519 22 6 3.5787 -1.2006 0.0052 23 6 2.1970 -1.1979 0.0047 24 6 1.4416 -2.5019 0.0110 25 1 -0.3633 0.0045 1.0276 26 1 -0.3634 0.8877 -0.5177 27 1 -0.3634 -0.8922 -0.5100 28 1 1.6560 2.1328 0.0005 29 1 4.1171 2.1370 -0.0090 30 1 5.9886 1.8261 -0.8978 31 1 5.9880 1.8342 0.8822 32 1 8.0909 0.5195 0.8880 33 1 8.0908 0.5118 -0.8920 34 1 8.1997 2.9894 -0.9021 35 1 8.1998 2.9964 0.8778 36 1 10.1446 5.0153 1.0072 37 1 10.9128 5.3273 -0.5678 38 1 9.2692 4.6477 -0.4984 39 1 13.0776 5.8802 1.3973 40 1 4.1173 -2.1367 0.0097 41 1 1.2591 -2.8112 1.0401 42 1 0.4895 -2.3727 -0.5038 43 1 2.0297 -3.2650 -0.4988 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266949213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:32 Heat of formation + Delta-G solvation = -59.391764 kcal Electronic energy + Delta-G solvation = -22097.104831 eV Core-core repulsion = 18721.373451 eV Total energy + Delta-G solvation = -3375.731381 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.32068 -38.60135 -38.02100 -34.82187 -33.51713 -32.73860 -31.94412 -31.49629 -28.20794 -27.04280 -26.16984 -25.85932 -24.22627 -22.55843 -21.65203 -20.46062 -18.78436 -17.67032 -16.87877 -16.46884 -16.24786 -15.79807 -15.41944 -14.82179 -14.63847 -14.34857 -14.29009 -13.98033 -13.67183 -13.34594 -13.18263 -13.03779 -12.62713 -12.27089 -12.16805 -12.09529 -11.85151 -11.58905 -11.40681 -11.38134 -11.17219 -11.15021 -10.88737 -10.86311 -10.67319 -10.35094 -10.30978 -10.19178 -9.03083 -8.93432 -8.39208 -8.10570 -7.67615 -6.30643 -3.87003 1.17746 1.30775 3.15342 3.16114 3.25833 3.33260 3.57983 3.90643 4.15150 4.58976 4.62139 4.79797 4.86168 4.95503 4.99669 5.05550 5.14562 5.15532 5.23931 5.26166 5.35877 5.41826 5.50634 5.57224 5.59465 5.65025 5.72901 5.81530 5.91115 5.94361 6.07341 6.20067 6.28365 6.37303 6.46016 6.48878 6.60023 6.71843 6.87982 7.22215 7.43389 7.57614 8.14376 8.49640 9.20156 9.44077 9.99683 10.73213 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.048267 B = 0.002278 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.969075 B =12286.699512 C =12777.914006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.134 4.134 3 C -0.076 4.076 4 C -0.212 4.212 5 C 0.136 3.864 6 O -0.312 6.312 7 C 0.060 3.940 8 C -0.098 4.098 9 C -0.126 4.126 10 C 0.446 3.554 11 O -0.590 6.590 12 N -0.449 5.449 13 C 0.113 3.887 14 C -0.304 4.304 15 H 0.099 0.901 16 C 0.028 3.972 17 N -0.885 5.885 18 Si 0.926 3.074 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.154 4.154 23 C -0.050 4.050 24 C -0.117 4.117 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.026 0.974 39 H 0.266 0.734 40 H 0.130 0.870 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.949 -5.360 -2.075 23.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.134 4.134 3 C -0.094 4.094 4 C -0.231 4.231 5 C 0.090 3.910 6 O -0.226 6.226 7 C -0.015 4.015 8 C -0.136 4.136 9 C -0.166 4.166 10 C 0.234 3.766 11 O -0.475 6.475 12 N -0.168 5.168 13 C -0.031 4.031 14 C -0.432 4.432 15 H 0.117 0.883 16 C -0.175 4.175 17 N -0.525 5.525 18 Si 0.753 3.247 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.172 4.172 23 C -0.050 4.050 24 C -0.173 4.173 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.141 0.859 29 H 0.147 0.853 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.148 0.852 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.478 -5.865 -1.994 23.316 hybrid contribution 0.943 0.702 0.017 1.176 sum -21.535 -5.163 -1.977 22.233 Atomic orbital electron populations 1.20760 0.91356 1.02520 1.02000 1.19624 0.95974 0.92540 1.05284 1.20790 0.93299 0.97499 0.97859 1.21287 0.95323 0.97328 1.09142 1.19041 0.82806 0.93989 0.95183 1.86098 1.15780 1.32692 1.87990 1.22970 0.93979 0.83367 1.01134 1.21199 0.89450 0.97931 1.04999 1.21403 0.95165 0.97167 1.02872 1.19955 0.87530 0.85314 0.83786 1.90522 1.77452 1.23739 1.55779 1.43619 1.06005 1.04395 1.62806 1.21505 0.94969 0.84959 1.01697 1.19716 0.80172 1.02995 1.40327 0.88342 1.25353 1.00538 0.96106 0.95481 1.70010 1.35834 1.10575 1.36064 0.85854 0.82311 0.78361 0.78138 1.19231 1.20702 1.20750 1.20292 0.93030 0.96516 1.07399 1.19509 0.92540 0.95056 0.97898 1.20869 1.00031 0.93924 1.02518 0.91589 0.91930 0.91418 0.85948 0.85328 0.92096 0.92035 0.90280 0.90348 0.90370 0.90151 0.92411 0.91327 0.95525 0.92361 0.85248 0.90944 0.91007 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 9.60 36.00 0.35 -0.40 16 2 C -0.13 -1.31 5.88 -104.60 -0.62 -1.92 16 3 C -0.08 -0.78 9.70 -39.60 -0.38 -1.16 16 4 C -0.21 -2.46 9.04 -39.44 -0.36 -2.82 16 5 C 0.14 1.80 6.69 -39.22 -0.26 1.54 16 6 O -0.31 -4.62 10.14 -19.42 -0.20 -4.81 16 7 C 0.06 0.81 4.74 37.16 0.18 0.98 16 8 C -0.10 -1.62 4.87 -26.73 -0.13 -1.75 16 9 C -0.13 -2.22 4.22 -27.88 -0.12 -2.33 16 10 C 0.45 10.87 7.63 -10.99 -0.08 10.79 16 11 O -0.59 -16.50 15.67 5.54 0.09 -16.42 16 12 N -0.45 -11.61 3.02 -122.19 -0.37 -11.97 16 13 C 0.11 2.49 8.52 59.85 0.51 3.00 16 14 C -0.30 -8.59 9.29 -14.93 -0.14 -8.72 16 15 H 0.10 2.92 7.41 -52.48 -0.39 2.53 16 16 C 0.03 0.74 5.11 -17.46 -0.09 0.65 16 17 N -0.88 -23.72 10.62 55.50 0.59 -23.13 16 18 Si 0.93 20.97 29.57 -169.99 -5.03 15.94 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 C -0.15 -1.84 9.64 -39.44 -0.38 -2.22 16 23 C -0.05 -0.51 5.88 -104.65 -0.62 -1.12 16 24 C -0.12 -0.84 9.60 36.01 0.35 -0.49 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 27 H 0.07 0.39 5.94 -51.93 -0.31 0.08 16 28 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.13 1.33 6.30 -52.48 -0.33 0.99 16 30 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 31 H 0.06 0.74 7.66 -51.92 -0.40 0.34 16 32 H 0.08 1.43 8.10 -51.93 -0.42 1.00 16 33 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 34 H 0.08 1.20 7.41 -51.93 -0.38 0.82 16 35 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 36 H 0.06 1.33 7.54 -51.93 -0.39 0.93 16 37 H 0.07 1.60 7.06 -51.93 -0.37 1.24 16 38 H 0.03 0.47 6.36 -51.93 -0.33 0.14 16 39 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 40 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.42 5.94 -51.93 -0.31 0.11 16 43 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -32.22 351.20 -7.95 -40.17 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.53 Total: 0.93 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: -1.80 Total: -5.99 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.22 Total: -35.11 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.11 Total: -21.23 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.22 -7.95 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266949213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.225 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds