Wall clock time and date at job start Tue Mar 31 2020 06:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38291 * 119.94636 * 2 1 4 4 C 1.38123 * 120.05427 * 180.25404 * 3 2 1 5 5 C 1.38746 * 119.94546 * 359.49604 * 4 3 2 6 6 O 1.35899 * 120.05727 * 180.27584 * 5 4 3 7 7 C 1.42897 * 116.99910 * 359.97438 * 6 5 4 8 8 C 1.53005 * 109.47191 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46888 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46919 * 180.02562 * 9 8 7 11 11 O 1.21295 * 120.00466 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00095 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00213 * 359.97438 * 12 10 9 14 14 C 1.37096 * 120.00020 * 179.97438 * 12 10 9 15 15 H 1.08006 * 120.00338 * 22.40535 * 14 12 10 16 16 C 1.38954 * 120.00060 * 202.40207 * 14 12 10 17 17 N 1.31417 * 119.99851 * 11.60663 * 16 14 12 18 18 Si 1.86802 * 120.00082 * 191.60809 * 16 14 12 19 19 H 1.48495 * 109.47020 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47198 * 119.99968 * 18 16 14 21 21 H 1.48497 * 109.47173 * 240.00033 * 18 16 14 22 22 C 1.38709 * 119.88969 * 0.25277 * 5 4 3 23 23 C 1.38162 * 119.94486 * 0.02562 * 22 5 4 24 24 C 1.50700 * 119.97582 * 180.02562 * 23 22 5 25 25 H 1.08997 * 109.46985 * 270.24943 * 1 2 3 26 26 H 1.09002 * 109.47285 * 30.25041 * 1 2 3 27 27 H 1.09005 * 109.47444 * 150.24677 * 1 2 3 28 28 H 1.07995 * 119.97150 * 0.03092 * 3 2 1 29 29 H 1.08006 * 120.02445 * 179.77341 * 4 3 2 30 30 H 1.08996 * 109.47862 * 300.00358 * 7 6 5 31 31 H 1.09008 * 109.46742 * 60.00350 * 7 6 5 32 32 H 1.09002 * 109.47057 * 300.00119 * 8 7 6 33 33 H 1.08994 * 109.46885 * 60.00321 * 8 7 6 34 34 H 1.09004 * 109.47387 * 299.99578 * 9 8 7 35 35 H 1.08994 * 109.47584 * 60.00150 * 9 8 7 36 36 H 1.08999 * 109.47154 * 92.15608 * 13 12 10 37 37 H 1.09000 * 109.47097 * 212.16129 * 13 12 10 38 38 H 1.09000 * 109.46771 * 332.15661 * 13 12 10 39 39 H 0.97000 * 119.99414 * 179.97438 * 17 16 14 40 40 H 1.08006 * 120.02725 * 180.02562 * 22 5 4 41 41 H 1.09003 * 109.47403 * 89.99346 * 24 23 22 42 42 H 1.08998 * 109.47376 * 209.99368 * 24 23 22 43 43 H 1.09000 * 109.47093 * 329.99981 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5785 1.2009 -0.0053 5 6 4.2734 0.0000 -0.0001 6 8 5.6324 -0.0001 0.0004 7 6 6.2811 1.2731 -0.0052 8 6 7.7980 1.0726 -0.0044 9 6 8.4926 2.4359 -0.0099 10 6 9.9865 2.2384 -0.0097 11 8 10.4502 1.1176 -0.0052 12 7 10.8076 3.3072 -0.0135 13 6 10.2477 4.6610 -0.0184 14 6 12.1667 3.1276 -0.0129 15 1 12.5888 2.1983 -0.3660 16 6 13.0013 4.1411 0.4421 17 7 12.4949 5.1728 1.0794 18 14 14.8431 4.0372 0.1479 19 1 15.1570 2.7858 -0.5873 20 1 15.2828 5.2062 -0.6555 21 1 15.5535 4.0373 1.4519 22 6 3.5787 -1.2006 0.0052 23 6 2.1970 -1.1979 0.0047 24 6 1.4416 -2.5019 0.0110 25 1 -0.3633 0.0045 1.0276 26 1 -0.3634 0.8877 -0.5177 27 1 -0.3634 -0.8922 -0.5100 28 1 1.6560 2.1328 0.0005 29 1 4.1171 2.1370 -0.0090 30 1 5.9886 1.8261 -0.8978 31 1 5.9880 1.8342 0.8822 32 1 8.0909 0.5195 0.8880 33 1 8.0908 0.5118 -0.8920 34 1 8.1997 2.9894 -0.9021 35 1 8.1998 2.9964 0.8778 36 1 10.1446 5.0153 1.0072 37 1 10.9128 5.3273 -0.5678 38 1 9.2692 4.6477 -0.4984 39 1 13.0776 5.8802 1.3973 40 1 4.1173 -2.1367 0.0097 41 1 1.2591 -2.8112 1.0401 42 1 0.4895 -2.3727 -0.5038 43 1 2.0297 -3.2650 -0.4988 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266949213.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:32 Heat of formation + Delta-G solvation = -77.582355 kcal Electronic energy + Delta-G solvation = -22097.893635 eV Core-core repulsion = 18721.373451 eV Total energy + Delta-G solvation = -3376.520184 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.20844 -40.41033 -38.99624 -36.76592 -34.87372 -33.64389 -33.46607 -32.67968 -29.30827 -28.32258 -27.59400 -26.77844 -26.00020 -23.58155 -22.74506 -21.35039 -20.51661 -18.91113 -18.63755 -17.92834 -17.39557 -17.09446 -16.51207 -16.25880 -16.14273 -15.87912 -15.20331 -15.11204 -14.66417 -14.55788 -14.25428 -14.05535 -13.61923 -13.54682 -13.36654 -13.23525 -13.13411 -12.97246 -12.81177 -12.74747 -12.65603 -12.39922 -12.20883 -12.12616 -12.03737 -11.97647 -11.60479 -11.43266 -11.03590 -10.37837 -9.72634 -9.69834 -8.94694 -8.34152 -5.99528 0.38015 0.48121 1.34530 1.39497 1.53449 2.02334 2.13500 2.30379 2.77442 3.08118 3.14095 3.78914 3.91674 3.92351 3.93758 4.08956 4.11746 4.23412 4.35923 4.38096 4.42092 4.44315 4.53603 4.57920 4.75721 4.80933 4.83425 4.86490 4.97286 5.03389 5.04907 5.12034 5.20666 5.24145 5.29896 5.41167 5.43745 5.44006 5.47300 5.75304 5.94431 6.09032 6.47892 6.50522 7.16432 7.47635 8.03242 8.67529 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.048267 B = 0.002278 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.969075 B =12286.699512 C =12777.914006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.137 4.137 3 C -0.082 4.082 4 C -0.220 4.220 5 C 0.106 3.894 6 O -0.338 6.338 7 C 0.069 3.931 8 C -0.091 4.091 9 C -0.111 4.111 10 C 0.432 3.568 11 O -0.638 6.638 12 N -0.467 5.467 13 C 0.120 3.880 14 C -0.344 4.344 15 H 0.068 0.932 16 C -0.005 4.005 17 N -0.897 5.897 18 Si 0.989 3.011 19 H -0.276 1.276 20 H -0.264 1.264 21 H -0.275 1.275 22 C -0.174 4.174 23 C -0.057 4.057 24 C -0.116 4.116 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.147 0.853 29 H 0.141 0.859 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.112 0.888 35 H 0.105 0.895 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.075 0.925 39 H 0.273 0.727 40 H 0.126 0.874 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.332 -4.018 -2.255 25.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.137 4.137 3 C -0.100 4.100 4 C -0.239 4.239 5 C 0.061 3.939 6 O -0.252 6.252 7 C -0.006 4.006 8 C -0.129 4.129 9 C -0.151 4.151 10 C 0.223 3.777 11 O -0.527 6.527 12 N -0.185 5.185 13 C -0.022 4.022 14 C -0.473 4.473 15 H 0.086 0.914 16 C -0.206 4.206 17 N -0.535 5.535 18 Si 0.813 3.187 19 H -0.200 1.200 20 H -0.189 1.189 21 H -0.201 1.201 22 C -0.192 4.192 23 C -0.057 4.057 24 C -0.172 4.172 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.164 0.836 29 H 0.159 0.841 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.144 0.856 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.892 -4.488 -2.170 25.386 hybrid contribution 1.609 0.244 0.096 1.631 sum -23.283 -4.244 -2.074 23.757 Atomic orbital electron populations 1.20827 0.89061 1.03709 1.02932 1.20066 0.97726 0.92181 1.03729 1.21151 0.92941 0.98818 0.97101 1.21487 0.96138 0.97106 1.09128 1.19305 0.82138 0.95201 0.97211 1.86034 1.17057 1.33373 1.88763 1.22837 0.91338 0.83398 1.02977 1.21046 0.92083 0.96884 1.02881 1.21336 0.89827 0.98380 1.05521 1.21136 0.90293 0.84286 0.82020 1.90484 1.79053 1.25639 1.57493 1.43922 1.05602 1.06111 1.62914 1.21491 0.96686 0.82762 1.01309 1.19636 0.82168 1.02813 1.42641 0.91378 1.26092 1.04501 0.95404 0.94616 1.70073 1.37320 1.10681 1.35467 0.84937 0.77112 0.78423 0.78224 1.20043 1.18867 1.20077 1.20506 0.94122 0.96272 1.08322 1.19877 0.91987 0.96748 0.97061 1.20934 1.00433 0.92492 1.03374 0.90643 0.90815 0.90246 0.83555 0.84147 0.89986 0.90289 0.92745 0.92329 0.87000 0.87695 0.93447 0.93045 0.90690 0.91700 0.85643 0.90030 0.89267 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 9.60 71.23 0.68 -0.45 16 2 C -0.14 -2.36 5.88 -19.85 -0.12 -2.47 16 3 C -0.08 -1.48 9.70 22.26 0.22 -1.27 16 4 C -0.22 -4.76 9.04 22.36 0.20 -4.56 16 5 C 0.11 2.80 6.69 22.50 0.15 2.95 16 6 O -0.34 -10.07 10.14 -92.42 -0.94 -11.01 16 7 C 0.07 1.76 4.74 71.98 0.34 2.10 16 8 C -0.09 -3.00 4.87 30.60 0.15 -2.85 16 9 C -0.11 -3.74 4.22 29.85 0.13 -3.62 16 10 C 0.43 21.39 7.63 87.66 0.67 22.06 16 11 O -0.64 -37.33 15.67 -3.08 -0.05 -37.38 16 12 N -0.47 -24.39 3.02 -658.88 -1.99 -26.38 16 13 C 0.12 5.20 8.52 127.77 1.09 6.29 16 14 C -0.34 -20.03 9.29 84.04 0.78 -19.25 16 15 H 0.07 4.27 7.41 -2.91 -0.02 4.25 16 16 C 0.00 -0.25 5.11 84.93 0.43 0.19 16 17 N -0.90 -47.76 10.62 21.67 0.23 -47.53 16 18 Si 0.99 43.19 29.57 68.60 2.03 45.22 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 20 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 21 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 22 C -0.17 -4.18 9.64 22.36 0.22 -3.96 16 23 C -0.06 -1.08 5.88 -19.88 -0.12 -1.20 16 24 C -0.12 -1.46 9.60 71.24 0.68 -0.77 16 25 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.07 0.62 8.09 -2.39 -0.02 0.61 16 27 H 0.08 0.65 5.94 -2.38 -0.01 0.63 16 28 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 29 H 0.14 2.56 6.30 -2.91 -0.02 2.54 16 30 H 0.08 1.73 7.66 -2.39 -0.02 1.72 16 31 H 0.08 1.73 7.66 -2.38 -0.02 1.71 16 32 H 0.05 2.03 8.10 -2.39 -0.02 2.02 16 33 H 0.06 2.14 8.10 -2.39 -0.02 2.12 16 34 H 0.11 3.06 7.41 -2.38 -0.02 3.05 16 35 H 0.10 3.08 8.11 -2.39 -0.02 3.06 16 36 H 0.05 2.12 7.54 -2.39 -0.02 2.11 16 37 H 0.05 2.37 7.06 -2.39 -0.02 2.35 16 38 H 0.07 2.46 6.36 -2.39 -0.02 2.44 16 39 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 40 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.09 0.80 5.94 -2.39 -0.01 0.78 16 43 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 Total: -1.00 -73.04 351.20 5.79 -67.25 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.00 Total: 16.66 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 5.51 Total: -6.83 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -1.76 Total: -73.91 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -0.98 Total: -48.38 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -73.04 5.79 -67.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266949213.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.334 kcal (2) G-P(sol) polarization free energy of solvation -73.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds