Wall clock time and date at job start Tue Mar 31 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38283 * 119.94199 * 2 1 4 4 C 1.38126 * 120.05798 * 179.97438 * 3 2 1 5 5 C 1.38752 * 119.93951 * 0.02562 * 4 3 2 6 6 O 1.35904 * 120.05419 * 180.02562 * 5 4 3 7 7 C 1.42901 * 116.99921 * 359.97438 * 6 5 4 8 8 C 1.53000 * 109.46872 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46820 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47071 * 180.02562 * 9 8 7 11 11 O 1.21290 * 120.00028 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99767 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00303 * 0.02562 * 12 10 9 14 14 C 1.37100 * 120.00044 * 180.02562 * 12 10 9 15 15 H 1.08003 * 119.99784 * 22.41027 * 14 12 10 16 16 C 1.38946 * 120.00504 * 202.41471 * 14 12 10 17 17 N 1.31414 * 120.00094 * 11.58807 * 16 14 12 18 18 Si 1.86798 * 120.00166 * 191.59287 * 16 14 12 19 19 H 1.48502 * 109.47397 * 89.99621 * 18 16 14 20 20 H 1.48498 * 109.47218 * 209.99246 * 18 16 14 21 21 H 1.48500 * 109.46992 * 329.99711 * 18 16 14 22 22 C 1.38713 * 119.88969 * 0.27242 * 5 4 3 23 23 C 1.50700 * 120.02617 * 179.72619 * 22 5 4 24 24 C 1.38168 * 119.94348 * 359.45489 * 22 5 4 25 25 H 1.09002 * 109.47575 * 90.00251 * 1 2 3 26 26 H 1.09008 * 109.46644 * 209.99558 * 1 2 3 27 27 H 1.08999 * 109.46941 * 329.99557 * 1 2 3 28 28 H 1.08004 * 119.97525 * 0.02562 * 3 2 1 29 29 H 1.07991 * 120.03068 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.46971 * 59.99993 * 7 6 5 31 31 H 1.09001 * 109.46935 * 300.00301 * 7 6 5 32 32 H 1.08997 * 109.47235 * 299.99945 * 8 7 6 33 33 H 1.08999 * 109.46703 * 60.00323 * 8 7 6 34 34 H 1.09005 * 109.47545 * 300.00675 * 9 8 7 35 35 H 1.09003 * 109.46875 * 60.00259 * 9 8 7 36 36 H 1.08999 * 109.47283 * 92.15752 * 13 12 10 37 37 H 1.08998 * 109.47040 * 212.15648 * 13 12 10 38 38 H 1.08995 * 109.46809 * 332.15309 * 13 12 10 39 39 H 0.97001 * 120.00454 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.47510 * 90.00235 * 23 22 5 41 41 H 1.08998 * 109.47177 * 210.00194 * 23 22 5 42 42 H 1.08997 * 109.47450 * 330.00032 * 23 22 5 43 43 H 1.07999 * 119.97229 * 180.27547 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5785 1.2011 0.0005 5 6 4.2734 0.0001 0.0005 6 8 5.6325 0.0001 0.0016 7 6 6.2812 1.2734 0.0021 8 6 7.7980 1.0729 0.0039 9 6 8.4925 2.4362 0.0038 10 6 9.9866 2.2388 0.0050 11 8 10.4502 1.1180 0.0053 12 7 10.8075 3.3077 0.0045 13 6 10.2475 4.6615 0.0035 14 6 12.1667 3.1282 0.0051 15 1 12.5889 2.2000 -0.3508 16 6 13.0010 4.1402 0.4635 17 7 12.4944 5.1701 1.1036 18 14 14.8429 4.0371 0.1699 19 1 15.1754 4.6883 -1.1227 20 1 15.5593 4.7291 1.2713 21 1 15.2583 2.6120 0.1275 22 6 3.5787 -1.2005 -0.0057 23 6 4.3304 -2.5066 -0.0120 24 6 2.1971 -1.1979 -0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6559 2.1328 0.0004 29 1 4.1171 2.1371 0.0001 30 1 5.9876 1.8304 0.8919 31 1 5.9889 1.8304 -0.8881 32 1 8.0898 0.5161 0.8943 33 1 8.0918 0.5158 -0.8857 34 1 8.2006 2.9928 -0.8868 35 1 8.1986 2.9937 0.8932 36 1 10.1440 5.0126 1.0302 37 1 10.9127 5.3294 -0.5436 38 1 9.2691 4.6495 -0.4768 39 1 13.0768 5.8768 1.4234 40 1 4.5112 -2.8268 1.0141 41 1 3.7405 -3.2629 -0.5298 42 1 5.2832 -2.3751 -0.5248 43 1 1.6557 -2.1324 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268783739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:35 Heat of formation + Delta-G solvation = -61.730251 kcal Electronic energy + Delta-G solvation = -22258.623793 eV Core-core repulsion = 18882.791008 eV Total energy + Delta-G solvation = -3375.832785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.35403 -38.57120 -37.79850 -34.82350 -33.73811 -32.82444 -31.69979 -31.49930 -27.71904 -27.32436 -26.26759 -25.80757 -24.30595 -22.69599 -21.02703 -20.78851 -18.82917 -17.88627 -16.87582 -16.42242 -16.26431 -15.77123 -15.09012 -14.82645 -14.57229 -14.45456 -14.02339 -13.98743 -13.48571 -13.36521 -13.31414 -12.94689 -12.68524 -12.34112 -12.07091 -11.97012 -11.84570 -11.58963 -11.41871 -11.39447 -11.18516 -11.14771 -10.91080 -10.86892 -10.66318 -10.36186 -10.33876 -10.19470 -9.02418 -8.94952 -8.39433 -8.04765 -7.68066 -6.30616 -3.87269 1.18920 1.30152 3.16480 3.17446 3.25452 3.31539 3.58047 3.90589 4.15036 4.60266 4.64831 4.74566 4.86214 5.02360 5.05321 5.12071 5.14420 5.19273 5.31038 5.34881 5.37358 5.47634 5.54980 5.63151 5.65071 5.72383 5.73587 5.77158 5.90079 6.06797 6.11757 6.22729 6.33294 6.37193 6.45398 6.45727 6.60128 6.73422 6.87752 7.21998 7.42466 7.57357 8.14046 8.49443 9.19920 9.43866 9.99486 10.73160 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040412 B = 0.002431 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.689422 B =11513.406949 C =12117.512735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.129 4.129 3 C -0.086 4.086 4 C -0.203 4.203 5 C 0.130 3.870 6 O -0.309 6.309 7 C 0.060 3.940 8 C -0.097 4.097 9 C -0.126 4.126 10 C 0.446 3.554 11 O -0.590 6.590 12 N -0.449 5.449 13 C 0.113 3.887 14 C -0.305 4.305 15 H 0.098 0.902 16 C 0.028 3.972 17 N -0.885 5.885 18 Si 0.927 3.073 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.269 1.269 22 C -0.117 4.117 23 C -0.106 4.106 24 C -0.085 4.085 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.122 0.878 29 H 0.129 0.871 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.026 0.974 39 H 0.267 0.733 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.753 -5.328 -2.135 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.130 4.130 3 C -0.104 4.104 4 C -0.222 4.222 5 C 0.084 3.916 6 O -0.222 6.222 7 C -0.015 4.015 8 C -0.135 4.135 9 C -0.166 4.166 10 C 0.234 3.766 11 O -0.475 6.475 12 N -0.168 5.168 13 C -0.031 4.031 14 C -0.433 4.433 15 H 0.116 0.884 16 C -0.174 4.174 17 N -0.525 5.525 18 Si 0.754 3.246 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.117 4.117 23 C -0.162 4.162 24 C -0.103 4.103 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.140 0.860 29 H 0.147 0.853 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.045 0.955 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.276 -5.832 -2.046 22.156 hybrid contribution 0.829 0.709 -0.009 1.091 sum -20.448 -5.123 -2.055 21.180 Atomic orbital electron populations 1.20695 0.91253 1.02454 1.01977 1.19768 0.96037 0.93036 1.04115 1.20789 0.93296 0.97571 0.98781 1.21288 0.95335 0.97252 1.08317 1.18888 0.82852 0.93551 0.96277 1.86088 1.15667 1.32495 1.87989 1.22969 0.93989 0.83443 1.01097 1.21191 0.89444 0.97914 1.04971 1.21406 0.95176 0.97179 1.02859 1.19950 0.87522 0.85303 0.83804 1.90521 1.77450 1.23729 1.55798 1.43613 1.05999 1.04388 1.62801 1.21505 0.94967 0.84969 1.01690 1.19675 0.80183 1.03144 1.40289 0.88376 1.25348 1.00537 0.96123 0.95430 1.69997 1.35959 1.10672 1.35854 0.85907 0.82185 0.78695 0.77815 1.20404 1.20959 1.19363 1.19288 0.93245 0.93693 1.05518 1.20613 1.00279 0.92996 1.02361 1.20725 0.92378 0.97690 0.99507 0.91590 0.91829 0.91831 0.86023 0.85285 0.92075 0.92146 0.90281 0.90374 0.90385 0.90171 0.92412 0.91330 0.95532 0.92303 0.91392 0.91904 0.90840 0.85671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.13 -1.26 5.88 -104.60 -0.62 -1.87 16 3 C -0.09 -0.88 9.69 -39.61 -0.38 -1.26 16 4 C -0.20 -2.35 9.04 -39.43 -0.36 -2.71 16 5 C 0.13 1.71 6.66 -39.22 -0.26 1.45 16 6 O -0.31 -4.46 9.18 -19.44 -0.18 -4.64 16 7 C 0.06 0.79 4.74 37.16 0.18 0.97 16 8 C -0.10 -1.59 4.87 -26.73 -0.13 -1.72 16 9 C -0.13 -2.21 4.22 -27.88 -0.12 -2.33 16 10 C 0.45 10.83 7.63 -10.99 -0.08 10.75 16 11 O -0.59 -16.44 15.67 5.55 0.09 -16.35 16 12 N -0.45 -11.57 3.02 -122.19 -0.37 -11.94 16 13 C 0.11 2.49 8.52 59.85 0.51 3.00 16 14 C -0.30 -8.59 9.29 -14.93 -0.14 -8.73 16 15 H 0.10 2.90 7.41 -52.48 -0.39 2.51 16 16 C 0.03 0.76 5.11 -17.47 -0.09 0.67 16 17 N -0.89 -23.69 10.62 55.50 0.59 -23.10 16 18 Si 0.93 20.94 29.57 -169.99 -5.03 15.91 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 C -0.12 -1.39 5.89 -104.47 -0.62 -2.01 16 23 C -0.11 -1.11 9.79 36.01 0.35 -0.76 16 24 C -0.08 -0.86 9.35 -39.61 -0.37 -1.23 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.38 8.08 -51.92 -0.42 -0.04 16 27 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 28 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 29 H 0.13 1.32 6.30 -52.49 -0.33 0.99 16 30 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 31 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 32 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 33 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 34 H 0.08 1.20 7.41 -51.93 -0.38 0.81 16 35 H 0.08 1.28 8.11 -51.93 -0.42 0.86 16 36 H 0.06 1.32 7.54 -51.93 -0.39 0.93 16 37 H 0.07 1.60 7.06 -51.93 -0.37 1.23 16 38 H 0.03 0.47 6.36 -51.93 -0.33 0.14 16 39 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.07 0.86 7.53 -51.93 -0.39 0.46 16 43 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 354.28 15.07 5.34 5.34 Total: -1.00 -31.93 354.28 -8.05 -39.98 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.73 Total: 0.95 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -1.76 Total: -6.15 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.22 Total: -35.04 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.09 Total: -20.99 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.93 -8.05 -39.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268783739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.750 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds