Wall clock time and date at job start Tue Mar 31 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38283 * 119.94199 * 2 1 4 4 C 1.38126 * 120.05798 * 179.97438 * 3 2 1 5 5 C 1.38752 * 119.93951 * 0.02562 * 4 3 2 6 6 O 1.35904 * 120.05419 * 180.02562 * 5 4 3 7 7 C 1.42901 * 116.99921 * 359.97438 * 6 5 4 8 8 C 1.53000 * 109.46872 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46820 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47071 * 180.02562 * 9 8 7 11 11 O 1.21290 * 120.00028 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99767 * 179.97438 * 10 9 8 13 13 C 1.46503 * 120.00303 * 0.02562 * 12 10 9 14 14 C 1.37100 * 120.00044 * 180.02562 * 12 10 9 15 15 H 1.08003 * 119.99784 * 22.41027 * 14 12 10 16 16 C 1.38946 * 120.00504 * 202.41471 * 14 12 10 17 17 N 1.31414 * 120.00094 * 11.58807 * 16 14 12 18 18 Si 1.86798 * 120.00166 * 191.59287 * 16 14 12 19 19 H 1.48502 * 109.47397 * 89.99621 * 18 16 14 20 20 H 1.48498 * 109.47218 * 209.99246 * 18 16 14 21 21 H 1.48500 * 109.46992 * 329.99711 * 18 16 14 22 22 C 1.38713 * 119.88969 * 0.27242 * 5 4 3 23 23 C 1.50700 * 120.02617 * 179.72619 * 22 5 4 24 24 C 1.38168 * 119.94348 * 359.45489 * 22 5 4 25 25 H 1.09002 * 109.47575 * 90.00251 * 1 2 3 26 26 H 1.09008 * 109.46644 * 209.99558 * 1 2 3 27 27 H 1.08999 * 109.46941 * 329.99557 * 1 2 3 28 28 H 1.08004 * 119.97525 * 0.02562 * 3 2 1 29 29 H 1.07991 * 120.03068 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.46971 * 59.99993 * 7 6 5 31 31 H 1.09001 * 109.46935 * 300.00301 * 7 6 5 32 32 H 1.08997 * 109.47235 * 299.99945 * 8 7 6 33 33 H 1.08999 * 109.46703 * 60.00323 * 8 7 6 34 34 H 1.09005 * 109.47545 * 300.00675 * 9 8 7 35 35 H 1.09003 * 109.46875 * 60.00259 * 9 8 7 36 36 H 1.08999 * 109.47283 * 92.15752 * 13 12 10 37 37 H 1.08998 * 109.47040 * 212.15648 * 13 12 10 38 38 H 1.08995 * 109.46809 * 332.15309 * 13 12 10 39 39 H 0.97001 * 120.00454 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.47510 * 90.00235 * 23 22 5 41 41 H 1.08998 * 109.47177 * 210.00194 * 23 22 5 42 42 H 1.08997 * 109.47450 * 330.00032 * 23 22 5 43 43 H 1.07999 * 119.97229 * 180.27547 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1983 0.0000 4 6 3.5785 1.2011 0.0005 5 6 4.2734 0.0001 0.0005 6 8 5.6325 0.0001 0.0016 7 6 6.2812 1.2734 0.0021 8 6 7.7980 1.0729 0.0039 9 6 8.4925 2.4362 0.0038 10 6 9.9866 2.2388 0.0050 11 8 10.4502 1.1180 0.0053 12 7 10.8075 3.3077 0.0045 13 6 10.2475 4.6615 0.0035 14 6 12.1667 3.1282 0.0051 15 1 12.5889 2.2000 -0.3508 16 6 13.0010 4.1402 0.4635 17 7 12.4944 5.1701 1.1036 18 14 14.8429 4.0371 0.1699 19 1 15.1754 4.6883 -1.1227 20 1 15.5593 4.7291 1.2713 21 1 15.2583 2.6120 0.1275 22 6 3.5787 -1.2005 -0.0057 23 6 4.3304 -2.5066 -0.0120 24 6 2.1971 -1.1979 -0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6559 2.1328 0.0004 29 1 4.1171 2.1371 0.0001 30 1 5.9876 1.8304 0.8919 31 1 5.9889 1.8304 -0.8881 32 1 8.0898 0.5161 0.8943 33 1 8.0918 0.5158 -0.8857 34 1 8.2006 2.9928 -0.8868 35 1 8.1986 2.9937 0.8932 36 1 10.1440 5.0126 1.0302 37 1 10.9127 5.3294 -0.5436 38 1 9.2691 4.6495 -0.4768 39 1 13.0768 5.8768 1.4234 40 1 4.5112 -2.8268 1.0141 41 1 3.7405 -3.2629 -0.5298 42 1 5.2832 -2.3751 -0.5248 43 1 1.6557 -2.1324 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268783739.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:35 Heat of formation + Delta-G solvation = -79.400903 kcal Electronic energy + Delta-G solvation = -22259.390050 eV Core-core repulsion = 18882.791008 eV Total energy + Delta-G solvation = -3376.599042 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.23792 -40.40498 -38.74548 -36.75989 -34.93056 -33.92153 -33.50173 -32.41338 -29.12590 -28.10885 -27.87068 -26.83194 -26.02740 -23.86773 -22.10690 -21.60045 -20.51131 -18.97180 -18.82300 -17.90588 -17.39329 -17.06989 -16.49423 -16.23253 -15.93202 -15.77233 -15.26395 -15.04903 -14.61208 -14.38962 -14.10988 -14.04333 -13.92179 -13.56866 -13.34508 -13.29348 -13.22682 -12.96779 -12.72820 -12.70296 -12.63109 -12.40571 -12.23230 -12.16959 -12.12990 -11.98547 -11.59761 -11.45499 -11.02458 -10.37480 -9.73890 -9.69948 -8.88899 -8.33741 -5.99388 0.39545 0.48610 1.36201 1.39601 1.51854 2.02916 2.15347 2.31023 2.78376 3.08451 3.14643 3.79336 3.88481 3.92746 3.93673 4.06868 4.12425 4.24969 4.40099 4.41349 4.43617 4.48494 4.57909 4.63797 4.72186 4.79970 4.80687 4.84912 4.91569 5.03549 5.03630 5.12460 5.17118 5.27214 5.36177 5.41161 5.42519 5.43745 5.53512 5.71154 5.95061 6.09132 6.48101 6.51104 7.16590 7.47887 8.03495 8.67703 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.040412 B = 0.002431 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.689422 B =11513.406949 C =12117.512735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.130 4.130 3 C -0.093 4.093 4 C -0.211 4.211 5 C 0.099 3.901 6 O -0.332 6.332 7 C 0.069 3.931 8 C -0.090 4.090 9 C -0.111 4.111 10 C 0.433 3.567 11 O -0.638 6.638 12 N -0.467 5.467 13 C 0.120 3.880 14 C -0.345 4.345 15 H 0.068 0.932 16 C -0.004 4.004 17 N -0.897 5.897 18 Si 0.989 3.011 19 H -0.265 1.265 20 H -0.272 1.272 21 H -0.278 1.278 22 C -0.135 4.135 23 C -0.104 4.104 24 C -0.090 4.090 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.145 0.855 29 H 0.140 0.860 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.273 0.727 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.062 -4.110 -2.322 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.130 4.130 3 C -0.111 4.111 4 C -0.229 4.229 5 C 0.054 3.946 6 O -0.246 6.246 7 C -0.006 4.006 8 C -0.128 4.128 9 C -0.151 4.151 10 C 0.223 3.777 11 O -0.526 6.526 12 N -0.186 5.186 13 C -0.022 4.022 14 C -0.473 4.473 15 H 0.086 0.914 16 C -0.206 4.206 17 N -0.535 5.535 18 Si 0.813 3.187 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.203 1.203 22 C -0.136 4.136 23 C -0.160 4.160 24 C -0.108 4.108 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.162 0.838 29 H 0.158 0.842 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.072 0.928 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -23.617 -4.580 -2.231 24.160 hybrid contribution 1.467 0.295 0.067 1.498 sum -22.150 -4.285 -2.164 22.664 Atomic orbital electron populations 1.20753 0.89057 1.03541 1.02898 1.20192 0.97710 0.92698 1.02440 1.21132 0.92944 0.98863 0.98188 1.21501 0.96148 0.97102 1.08187 1.19177 0.82251 0.94787 0.98369 1.86031 1.16859 1.33005 1.88734 1.22824 0.91371 0.83551 1.02851 1.21030 0.92061 0.96809 1.02873 1.21340 0.89850 0.98442 1.05464 1.21130 0.90279 0.84275 0.82018 1.90483 1.79047 1.25613 1.57482 1.43918 1.05603 1.06102 1.62936 1.21488 0.96672 0.82783 1.01294 1.19606 0.82174 1.02974 1.42568 0.91356 1.26085 1.04496 0.95425 0.94577 1.70064 1.37410 1.10770 1.35289 0.84993 0.77024 0.78190 0.78489 1.18958 1.19721 1.20311 1.19589 0.94246 0.93773 1.05975 1.20602 0.99651 0.93370 1.02427 1.21029 0.91759 0.99059 0.98918 0.90624 0.90784 0.90799 0.83763 0.84185 0.90421 0.90122 0.92726 0.92330 0.87061 0.87757 0.93459 0.93052 0.90719 0.91701 0.91323 0.89861 0.92765 0.83514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 71.24 0.71 -0.39 16 2 C -0.13 -2.20 5.88 -19.85 -0.12 -2.32 16 3 C -0.09 -1.67 9.69 22.25 0.22 -1.46 16 4 C -0.21 -4.52 9.04 22.37 0.20 -4.32 16 5 C 0.10 2.55 6.66 22.51 0.15 2.70 16 6 O -0.33 -9.62 9.18 -92.47 -0.85 -10.47 16 7 C 0.07 1.72 4.74 71.98 0.34 2.07 16 8 C -0.09 -2.93 4.87 30.59 0.15 -2.78 16 9 C -0.11 -3.74 4.22 29.85 0.13 -3.61 16 10 C 0.43 21.33 7.63 87.66 0.67 22.00 16 11 O -0.64 -37.15 15.67 -3.06 -0.05 -37.20 16 12 N -0.47 -24.34 3.02 -658.90 -1.99 -26.33 16 13 C 0.12 5.20 8.52 127.77 1.09 6.29 16 14 C -0.35 -20.03 9.29 84.04 0.78 -19.25 16 15 H 0.07 4.27 7.41 -2.91 -0.02 4.25 16 16 C 0.00 -0.23 5.11 84.92 0.43 0.20 16 17 N -0.90 -47.73 10.62 21.66 0.23 -47.50 16 18 Si 0.99 43.12 29.57 68.60 2.03 45.15 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 C -0.14 -3.13 5.89 -19.77 -0.12 -3.25 16 23 C -0.10 -2.18 9.79 71.24 0.70 -1.48 16 24 C -0.09 -1.66 9.35 22.25 0.21 -1.45 16 25 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.07 0.63 8.08 -2.38 -0.02 0.61 16 27 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 28 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 29 H 0.14 2.54 6.30 -2.92 -0.02 2.52 16 30 H 0.08 1.68 7.66 -2.39 -0.02 1.67 16 31 H 0.08 1.69 7.66 -2.39 -0.02 1.67 16 32 H 0.05 2.02 8.10 -2.39 -0.02 2.00 16 33 H 0.06 2.11 8.10 -2.39 -0.02 2.10 16 34 H 0.11 3.04 7.41 -2.38 -0.02 3.02 16 35 H 0.10 3.06 8.11 -2.39 -0.02 3.04 16 36 H 0.05 2.12 7.54 -2.39 -0.02 2.10 16 37 H 0.05 2.36 7.06 -2.39 -0.02 2.34 16 38 H 0.07 2.45 6.36 -2.39 -0.02 2.43 16 39 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 40 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 42 H 0.05 1.32 7.53 -2.39 -0.02 1.30 16 43 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -72.24 354.28 5.90 -66.33 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.99 Total: 17.06 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 5.54 Total: -7.05 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -1.76 Total: -73.83 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -0.90 Total: -47.67 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -72.24 5.90 -66.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268783739.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.066 kcal (2) G-P(sol) polarization free energy of solvation -72.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds