Wall clock time and date at job start Tue Mar 31 2020 07:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.50222 * 2 1 4 4 C 1.53119 * 109.53763 * 239.90044 * 2 1 3 5 5 C 1.53120 * 109.15861 * 182.38742 * 4 2 1 6 6 C 1.53033 * 109.28027 * 57.65126 * 5 4 2 7 7 N 1.46851 * 109.52632 * 300.82218 * 6 5 4 8 8 C 1.46894 * 111.00121 * 185.83801 * 7 6 5 9 9 C 1.50706 * 109.47133 * 45.78806 * 8 7 6 10 10 C 1.38304 * 119.92743 * 90.00030 * 9 8 7 11 11 C 1.38097 * 120.06541 * 179.97438 * 10 9 8 12 12 C 1.38883 * 119.93296 * 0.02562 * 11 10 9 13 13 O 1.35755 * 120.06887 * 180.02562 * 12 11 10 14 14 C 1.34833 * 117.00015 * 5.52430 * 13 12 11 15 15 H 1.08002 * 119.99700 * 354.64210 * 14 13 12 16 16 C 1.38650 * 119.99870 * 174.92275 * 14 13 12 17 17 N 1.31563 * 120.00075 * 359.72497 * 16 14 13 18 18 Si 1.86794 * 120.00095 * 179.72377 * 16 14 13 19 19 H 1.48496 * 109.47215 * 59.99628 * 18 16 14 20 20 H 1.48500 * 109.47244 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47070 * 299.99941 * 18 16 14 22 22 C 1.38875 * 119.86251 * 0.26747 * 12 11 10 23 23 C 1.38107 * 119.92796 * 359.47662 * 22 12 11 24 24 C 1.46849 * 111.19685 * 61.74153 * 7 6 5 25 25 H 1.08996 * 109.47236 * 299.92350 * 1 2 3 26 26 H 1.09002 * 109.46439 * 59.92382 * 1 2 3 27 27 H 1.09000 * 109.46829 * 179.97438 * 1 2 3 28 28 H 0.96702 * 113.99715 * 300.07737 * 3 2 1 29 29 H 1.09000 * 109.52182 * 302.29162 * 4 2 1 30 30 H 1.08994 * 109.52244 * 62.48115 * 4 2 1 31 31 H 1.08991 * 109.50179 * 177.59651 * 5 4 2 32 32 H 1.09005 * 109.50094 * 297.67032 * 5 4 2 33 33 H 1.09003 * 109.46214 * 180.80419 * 6 5 4 34 34 H 1.09004 * 109.46312 * 60.83968 * 6 5 4 35 35 H 1.09001 * 109.47555 * 285.78894 * 8 7 6 36 36 H 1.08999 * 109.47501 * 165.78554 * 8 7 6 37 37 H 1.07996 * 119.96494 * 359.97438 * 10 9 8 38 38 H 1.08001 * 120.03673 * 179.97438 * 11 10 9 39 39 H 0.96999 * 120.00012 * 180.02562 * 17 16 14 40 40 H 1.07997 * 120.03846 * 179.72323 * 22 12 11 41 41 H 1.07997 * 119.96532 * 180.27158 * 23 22 12 42 42 H 1.08995 * 109.46453 * 58.27497 * 24 7 6 43 43 H 1.08995 * 109.45819 * 178.24680 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0071 1.3470 0.0000 4 6 2.0421 -0.7237 -1.2484 5 6 3.5721 -0.7709 -1.2098 6 6 4.0238 -1.4715 0.0736 7 7 3.5092 -0.7407 1.2388 8 6 4.0370 -1.3040 2.4886 9 6 5.5198 -1.5343 2.3490 10 6 6.4092 -0.5333 2.6949 11 6 7.7685 -0.7415 2.5687 12 6 8.2422 -1.9574 2.0933 13 8 9.5779 -2.1652 1.9685 14 6 10.3939 -1.1960 2.4298 15 1 9.9781 -0.2683 2.7945 16 6 11.7670 -1.3880 2.4305 17 7 12.2735 -2.5181 1.9862 18 14 12.8980 -0.0423 3.0624 19 1 12.5757 0.2489 4.4824 20 1 14.3094 -0.4917 2.9567 21 1 12.7080 1.1860 2.2497 22 6 7.3464 -2.9584 1.7410 23 6 5.9883 -2.7460 1.8746 24 6 2.0409 -0.7230 1.2484 25 1 -0.3633 0.5126 0.8906 26 1 -0.3632 0.5150 -0.8894 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7211 1.8656 -0.7645 29 1 1.6467 -1.7392 -1.2687 30 1 1.7166 -0.1872 -2.1396 31 1 3.9410 -1.3223 -2.0746 32 1 3.9681 0.2444 -1.2296 33 1 5.1129 -1.4941 0.1110 34 1 3.6389 -2.4913 0.0855 35 1 3.5404 -2.2513 2.6985 36 1 3.8530 -0.6081 3.3071 37 1 6.0402 0.4122 3.0641 38 1 8.4626 0.0407 2.8385 39 1 13.2341 -2.6525 1.9871 40 1 7.7114 -3.9034 1.3668 41 1 5.2913 -3.5256 1.6050 42 1 1.6653 -1.7461 1.2548 43 1 1.6899 -0.2018 2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271018297.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:12 Heat of formation + Delta-G solvation = -52.706446 kcal Electronic energy + Delta-G solvation = -23321.288143 eV Core-core repulsion = 19945.846659 eV Total energy + Delta-G solvation = -3375.441484 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.90688 -38.91488 -37.10279 -35.58872 -33.01304 -32.20879 -31.52615 -30.16832 -29.62643 -26.72368 -26.07845 -24.97618 -22.91636 -22.13039 -21.64503 -20.15352 -19.75591 -17.95338 -16.91643 -16.45860 -15.99588 -15.47496 -14.95613 -14.67049 -14.51073 -14.21831 -14.14179 -13.79021 -13.52837 -13.36671 -13.24061 -12.77823 -12.69049 -12.48656 -12.17871 -12.05316 -11.88233 -11.67737 -11.50395 -11.33278 -11.02931 -10.87772 -10.65255 -10.62011 -10.54086 -10.41602 -10.18613 -9.83795 -9.30365 -8.80672 -8.13895 -8.07686 -7.12793 -6.43216 -4.01908 2.23579 2.31777 3.15214 3.15943 3.18801 3.96486 3.98998 4.13578 4.55374 4.65867 4.68738 4.78297 5.03132 5.11606 5.20918 5.27729 5.32095 5.35860 5.39730 5.46534 5.53190 5.60919 5.66477 5.69383 5.78356 5.83268 5.86906 5.90504 5.97698 6.01030 6.24310 6.30333 6.36695 6.47294 6.72521 6.93895 7.07217 7.19625 7.25986 7.35321 7.45173 7.47849 7.65780 7.85286 8.02157 9.02564 9.72710 10.74801 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031205 B = 0.003123 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.065795 B = 8964.508744 C = 9111.080953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.134 3.866 3 O -0.539 6.539 4 C -0.145 4.145 5 C -0.114 4.114 6 C 0.053 3.947 7 N -0.521 5.521 8 C 0.113 3.887 9 C -0.184 4.184 10 C -0.048 4.048 11 C -0.235 4.235 12 C 0.156 3.844 13 O -0.178 6.178 14 C -0.391 4.391 15 H 0.092 0.908 16 C 0.039 3.961 17 N -0.864 5.864 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.194 4.194 23 C -0.069 4.069 24 C 0.071 3.929 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.366 0.634 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.024 0.976 35 H 0.029 0.971 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.270 0.730 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.041 0.959 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.967 3.699 -4.043 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.093 3.907 3 O -0.343 6.343 4 C -0.183 4.183 5 C -0.151 4.151 6 C -0.075 4.075 7 N -0.245 5.245 8 C -0.013 4.013 9 C -0.185 4.185 10 C -0.067 4.067 11 C -0.255 4.255 12 C 0.102 3.898 13 O -0.081 6.081 14 C -0.468 4.468 15 H 0.109 0.891 16 C -0.165 4.165 17 N -0.499 5.499 18 Si 0.765 3.235 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.213 4.213 23 C -0.087 4.087 24 C -0.058 4.058 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.212 0.788 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.144 0.856 39 H 0.080 0.920 40 H 0.133 0.867 41 H 0.124 0.876 42 H 0.059 0.941 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.147 3.681 -3.630 20.800 hybrid contribution -0.047 -0.019 -0.197 0.203 sum -20.194 3.662 -3.827 20.877 Atomic orbital electron populations 1.22479 0.96022 1.02557 1.02553 1.21189 0.91357 0.83285 0.94896 1.86721 1.76826 1.22259 1.48518 1.22288 0.97525 1.00856 0.97673 1.21519 0.94312 1.02285 0.97031 1.22207 1.01932 0.93762 0.89607 1.61954 1.05882 1.54330 1.02376 1.20820 0.92012 0.97053 0.91437 1.19078 0.93542 0.95602 1.10324 1.20586 0.92299 0.97135 0.96653 1.21165 0.95656 0.98725 1.09930 1.19392 0.85391 0.92736 0.92261 1.83975 1.10707 1.43760 1.69703 1.21290 0.87114 0.95869 1.42495 0.89085 1.25283 0.96400 0.97895 0.96915 1.70032 1.13130 1.23765 1.42965 0.85785 0.78678 0.79645 0.79366 1.19484 1.20304 1.19473 1.20154 0.91867 0.99145 1.10183 1.20486 0.94118 0.95927 0.98209 1.22013 0.88934 0.97613 0.97220 0.91709 0.92214 0.91800 0.78799 0.91653 0.91869 0.91858 0.90513 0.88935 0.95784 0.95267 0.90804 0.87351 0.85601 0.91995 0.86653 0.87616 0.94147 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 8.82 37.16 0.33 -0.99 16 2 C 0.13 1.32 1.00 -90.54 -0.09 1.23 16 3 O -0.54 -6.04 12.31 -35.23 -0.43 -6.47 16 4 C -0.15 -1.37 4.99 -26.61 -0.13 -1.51 16 5 C -0.11 -1.34 5.94 -26.65 -0.16 -1.50 16 6 C 0.05 0.73 4.57 -3.83 -0.02 0.71 16 7 N -0.52 -7.29 4.68 -236.11 -1.11 -8.40 16 8 C 0.11 1.64 5.43 -4.98 -0.03 1.61 16 9 C -0.18 -3.21 4.13 -104.57 -0.43 -3.64 16 10 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 11 C -0.24 -5.21 9.17 -39.39 -0.36 -5.57 16 12 C 0.16 3.81 6.65 -39.11 -0.26 3.55 16 13 O -0.18 -5.13 9.76 0.03 0.00 -5.13 16 14 C -0.39 -11.05 9.49 30.88 0.29 -10.75 16 15 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 16 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 17 N -0.86 -25.52 13.67 55.48 0.76 -24.76 16 18 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 22 C -0.19 -4.12 9.99 -39.39 -0.39 -4.51 16 23 C -0.07 -1.23 7.78 -39.61 -0.31 -1.53 16 24 C 0.07 0.81 4.40 -3.83 -0.02 0.79 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.37 2.67 9.05 45.56 0.41 3.08 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.02 7.80 -51.93 -0.40 0.61 16 33 H 0.09 1.52 5.64 -51.93 -0.29 1.23 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.03 0.39 8.02 -51.93 -0.42 -0.02 16 36 H 0.07 1.03 8.08 -51.93 -0.42 0.61 16 37 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 38 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 41 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -31.45 344.01 -8.58 -40.02 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -5.90 Total: 6.29 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: -2.06 Total: -22.42 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: -0.35 Total: -33.16 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.43 Total: -11.60 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.45 -8.58 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271018297.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.684 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds