Wall clock time and date at job start Tue Mar 31 2020 07:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.50222 * 2 1 4 4 C 1.53119 * 109.53763 * 239.90044 * 2 1 3 5 5 C 1.53120 * 109.15861 * 182.38742 * 4 2 1 6 6 C 1.53033 * 109.28027 * 57.65126 * 5 4 2 7 7 N 1.46851 * 109.52632 * 300.82218 * 6 5 4 8 8 C 1.46894 * 111.00121 * 185.83801 * 7 6 5 9 9 C 1.50706 * 109.47133 * 45.78806 * 8 7 6 10 10 C 1.38304 * 119.92743 * 90.00030 * 9 8 7 11 11 C 1.38097 * 120.06541 * 179.97438 * 10 9 8 12 12 C 1.38883 * 119.93296 * 0.02562 * 11 10 9 13 13 O 1.35755 * 120.06887 * 180.02562 * 12 11 10 14 14 C 1.34833 * 117.00015 * 5.52430 * 13 12 11 15 15 H 1.08002 * 119.99700 * 354.64210 * 14 13 12 16 16 C 1.38650 * 119.99870 * 174.92275 * 14 13 12 17 17 N 1.31563 * 120.00075 * 359.72497 * 16 14 13 18 18 Si 1.86794 * 120.00095 * 179.72377 * 16 14 13 19 19 H 1.48496 * 109.47215 * 59.99628 * 18 16 14 20 20 H 1.48500 * 109.47244 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47070 * 299.99941 * 18 16 14 22 22 C 1.38875 * 119.86251 * 0.26747 * 12 11 10 23 23 C 1.38107 * 119.92796 * 359.47662 * 22 12 11 24 24 C 1.46849 * 111.19685 * 61.74153 * 7 6 5 25 25 H 1.08996 * 109.47236 * 299.92350 * 1 2 3 26 26 H 1.09002 * 109.46439 * 59.92382 * 1 2 3 27 27 H 1.09000 * 109.46829 * 179.97438 * 1 2 3 28 28 H 0.96702 * 113.99715 * 300.07737 * 3 2 1 29 29 H 1.09000 * 109.52182 * 302.29162 * 4 2 1 30 30 H 1.08994 * 109.52244 * 62.48115 * 4 2 1 31 31 H 1.08991 * 109.50179 * 177.59651 * 5 4 2 32 32 H 1.09005 * 109.50094 * 297.67032 * 5 4 2 33 33 H 1.09003 * 109.46214 * 180.80419 * 6 5 4 34 34 H 1.09004 * 109.46312 * 60.83968 * 6 5 4 35 35 H 1.09001 * 109.47555 * 285.78894 * 8 7 6 36 36 H 1.08999 * 109.47501 * 165.78554 * 8 7 6 37 37 H 1.07996 * 119.96494 * 359.97438 * 10 9 8 38 38 H 1.08001 * 120.03673 * 179.97438 * 11 10 9 39 39 H 0.96999 * 120.00012 * 180.02562 * 17 16 14 40 40 H 1.07997 * 120.03846 * 179.72323 * 22 12 11 41 41 H 1.07997 * 119.96532 * 180.27158 * 23 22 12 42 42 H 1.08995 * 109.46453 * 58.27497 * 24 7 6 43 43 H 1.08995 * 109.45819 * 178.24680 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0071 1.3470 0.0000 4 6 2.0421 -0.7237 -1.2484 5 6 3.5721 -0.7709 -1.2098 6 6 4.0238 -1.4715 0.0736 7 7 3.5092 -0.7407 1.2388 8 6 4.0370 -1.3040 2.4886 9 6 5.5198 -1.5343 2.3490 10 6 6.4092 -0.5333 2.6949 11 6 7.7685 -0.7415 2.5687 12 6 8.2422 -1.9574 2.0933 13 8 9.5779 -2.1652 1.9685 14 6 10.3939 -1.1960 2.4298 15 1 9.9781 -0.2683 2.7945 16 6 11.7670 -1.3880 2.4305 17 7 12.2735 -2.5181 1.9862 18 14 12.8980 -0.0423 3.0624 19 1 12.5757 0.2489 4.4824 20 1 14.3094 -0.4917 2.9567 21 1 12.7080 1.1860 2.2497 22 6 7.3464 -2.9584 1.7410 23 6 5.9883 -2.7460 1.8746 24 6 2.0409 -0.7230 1.2484 25 1 -0.3633 0.5126 0.8906 26 1 -0.3632 0.5150 -0.8894 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7211 1.8656 -0.7645 29 1 1.6467 -1.7392 -1.2687 30 1 1.7166 -0.1872 -2.1396 31 1 3.9410 -1.3223 -2.0746 32 1 3.9681 0.2444 -1.2296 33 1 5.1129 -1.4941 0.1110 34 1 3.6389 -2.4913 0.0855 35 1 3.5404 -2.2513 2.6985 36 1 3.8530 -0.6081 3.3071 37 1 6.0402 0.4122 3.0641 38 1 8.4626 0.0407 2.8385 39 1 13.2341 -2.6525 1.9871 40 1 7.7114 -3.9034 1.3668 41 1 5.2913 -3.5256 1.6050 42 1 1.6653 -1.7461 1.2548 43 1 1.6899 -0.2018 2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271018297.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:11 Heat of formation + Delta-G solvation = -75.061467 kcal Electronic energy + Delta-G solvation = -23322.257529 eV Core-core repulsion = 19945.846659 eV Total energy + Delta-G solvation = -3376.410870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.09963 -40.37781 -38.60702 -36.79322 -34.39971 -33.82899 -32.34015 -31.81126 -31.05517 -27.74320 -27.49862 -26.57528 -23.96118 -23.69105 -22.88630 -21.52292 -20.67731 -19.83346 -18.81550 -17.29205 -16.97208 -16.60619 -16.47738 -16.27119 -15.67427 -15.51632 -15.44933 -15.32819 -14.92477 -14.69306 -14.41098 -14.18213 -13.98851 -13.58714 -13.47114 -13.07996 -12.84850 -12.81551 -12.78226 -12.70714 -12.41787 -12.31951 -12.15223 -12.01108 -11.77594 -11.71040 -11.17959 -11.10480 -10.78226 -10.59631 -9.76748 -9.19153 -8.82870 -8.47412 -6.15576 0.58718 0.66444 1.34725 1.45353 1.50925 2.17949 2.73221 3.02884 3.26594 3.43100 3.51046 3.82603 3.84631 3.98673 4.03875 4.09614 4.18070 4.24938 4.39615 4.44549 4.57883 4.61538 4.65712 4.68290 4.73627 4.77879 4.84915 4.88804 4.99948 5.05419 5.06308 5.09095 5.15717 5.27898 5.29524 5.36692 5.43972 5.55304 5.71327 5.81413 6.02602 6.16359 6.21652 6.30698 6.97284 7.05731 7.77710 8.75617 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031205 B = 0.003123 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.065795 B = 8964.508744 C = 9111.080953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 O -0.564 6.564 4 C -0.140 4.140 5 C -0.113 4.113 6 C 0.053 3.947 7 N -0.535 5.535 8 C 0.114 3.886 9 C -0.156 4.156 10 C -0.051 4.051 11 C -0.243 4.243 12 C 0.116 3.884 13 O -0.232 6.232 14 C -0.415 4.415 15 H 0.100 0.900 16 C -0.022 4.022 17 N -0.921 5.921 18 Si 1.018 2.982 19 H -0.257 1.257 20 H -0.270 1.270 21 H -0.258 1.258 22 C -0.203 4.203 23 C -0.056 4.056 24 C 0.066 3.934 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.381 0.619 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.035 0.965 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.132 0.868 38 H 0.117 0.883 39 H 0.273 0.727 40 H 0.114 0.886 41 H 0.141 0.859 42 H 0.055 0.945 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.437 4.674 -3.968 25.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.091 3.909 3 O -0.371 6.371 4 C -0.177 4.177 5 C -0.151 4.151 6 C -0.075 4.075 7 N -0.260 5.260 8 C -0.012 4.012 9 C -0.157 4.157 10 C -0.070 4.070 11 C -0.263 4.263 12 C 0.066 3.934 13 O -0.138 6.138 14 C -0.491 4.491 15 H 0.117 0.883 16 C -0.219 4.219 17 N -0.559 5.559 18 Si 0.837 3.163 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.182 1.182 22 C -0.222 4.222 23 C -0.075 4.075 24 C -0.062 4.062 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.230 0.770 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.150 0.850 38 H 0.135 0.865 39 H 0.082 0.918 40 H 0.132 0.868 41 H 0.159 0.841 42 H 0.073 0.927 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.693 4.670 -3.563 24.411 hybrid contribution 0.647 -0.335 -0.258 0.773 sum -23.046 4.335 -3.820 23.760 Atomic orbital electron populations 1.22399 0.93866 1.03420 1.03183 1.21254 0.92851 0.82626 0.94128 1.86670 1.77503 1.23129 1.49786 1.22258 0.95303 1.01779 0.98396 1.21483 0.96407 1.00909 0.96263 1.22146 0.99936 0.94742 0.90663 1.61923 1.07856 1.54404 1.01802 1.20851 0.89405 0.98584 0.92378 1.19541 0.95516 0.94377 1.06311 1.20869 0.91080 0.98662 0.96360 1.21235 0.97090 0.97817 1.10121 1.19910 0.84629 0.94617 0.94251 1.83938 1.12581 1.44877 1.72427 1.21776 0.87918 0.96410 1.42980 0.88269 1.26578 0.97769 1.00667 0.96918 1.70177 1.13581 1.26476 1.45672 0.84664 0.76159 0.76314 0.79190 1.18164 1.19486 1.18222 1.20403 0.93061 0.98616 1.10128 1.20823 0.93013 0.97054 0.96587 1.22158 0.86972 0.98788 0.98291 0.91959 0.90795 0.90790 0.77047 0.90560 0.90092 0.91253 0.92449 0.92213 0.94686 0.93230 0.89795 0.85003 0.86544 0.91806 0.86826 0.84083 0.92661 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 8.82 71.98 0.64 -1.22 16 2 C 0.13 2.15 1.00 -10.74 -0.01 2.14 16 3 O -0.56 -11.18 12.31 -148.98 -1.83 -13.01 16 4 C -0.14 -2.15 4.99 30.67 0.15 -1.99 16 5 C -0.11 -2.43 5.94 30.65 0.18 -2.25 16 6 C 0.05 1.34 4.57 86.32 0.39 1.73 16 7 N -0.54 -13.37 4.68 -900.92 -4.22 -17.59 16 8 C 0.11 2.91 5.43 85.56 0.46 3.37 16 9 C -0.16 -5.11 4.13 -19.83 -0.08 -5.19 16 10 C -0.05 -1.89 9.69 22.25 0.22 -1.68 16 11 C -0.24 -11.07 9.17 22.39 0.21 -10.86 16 12 C 0.12 5.94 6.65 22.58 0.15 6.09 16 13 O -0.23 -14.24 9.76 -22.82 -0.22 -14.47 16 14 C -0.41 -24.70 9.49 67.92 0.64 -24.06 16 15 H 0.10 5.46 5.21 -2.91 -0.02 5.44 16 16 C -0.02 -1.26 5.49 84.83 0.47 -0.80 16 17 N -0.92 -57.31 13.67 21.61 0.30 -57.01 16 18 Si 1.02 43.63 29.55 68.60 2.03 45.66 16 19 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 22 C -0.20 -8.79 9.99 22.39 0.22 -8.56 16 23 C -0.06 -1.92 7.78 22.25 0.17 -1.75 16 24 C 0.07 1.27 4.40 86.33 0.38 1.65 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.38 4.60 9.05 -74.06 -0.67 3.93 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.45 7.80 -2.38 -0.02 1.44 16 33 H 0.06 1.89 5.64 -2.39 -0.01 1.87 16 34 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 1.10 8.02 -2.39 -0.02 1.08 16 36 H 0.08 2.02 8.08 -2.39 -0.02 2.00 16 37 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 38 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 39 H 0.27 15.56 8.31 -92.71 -0.77 14.78 16 40 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 41 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 42 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.08 1.50 8.12 -2.39 -0.02 1.49 16 Total: -1.00 -72.87 344.01 0.57 -72.29 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: 0.33 Total: 27.50 kcal Atomic # 6 Polarization: -47.56 SS G_CDS: 4.19 Total: -43.37 kcal Atomic # 7 Polarization: -70.68 SS G_CDS: -3.92 Total: -74.60 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: -2.06 Total: -27.48 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -72.87 0.57 -72.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271018297.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.769 kcal (2) G-P(sol) polarization free energy of solvation -72.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds