Wall clock time and date at job start Tue Mar 31 2020 06:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 C 1.52992 * 109.47240 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.47231 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00029 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00203 * 179.97438 * 11 10 9 14 14 C 1.46491 * 120.00062 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47112 * 180.02562 * 14 13 11 16 16 C 1.50704 * 109.47253 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99673 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00035 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00246 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99893 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47501 * 60.00041 * 20 18 16 22 22 H 1.48504 * 109.47239 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47222 * 299.99549 * 20 18 16 24 24 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 28 28 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 29 29 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 30 30 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 31 31 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 32 32 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 33 33 H 1.09003 * 109.47171 * 300.00390 * 9 8 7 34 34 H 1.09002 * 109.47269 * 59.99750 * 9 8 7 35 35 H 1.08998 * 109.47132 * 299.99619 * 10 9 8 36 36 H 1.08997 * 109.47536 * 60.00010 * 10 9 8 37 37 H 0.97003 * 119.99353 * 0.02562 * 13 11 10 38 38 H 1.09000 * 109.47483 * 299.99781 * 14 13 11 39 39 H 1.09000 * 109.47654 * 60.00122 * 14 13 11 40 40 H 1.08998 * 109.47125 * 299.99582 * 15 14 13 41 41 H 1.08997 * 109.47520 * 59.99959 * 15 14 13 42 42 H 0.97001 * 120.00124 * 180.02562 * 19 18 16 43 43 H 1.07997 * 120.03255 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 6 7.8073 -3.6256 -0.0178 11 6 8.3854 -5.0173 -0.0238 12 8 7.6480 -5.9802 -0.0289 13 7 9.7218 -5.1920 -0.0247 14 6 10.2837 -6.5448 -0.0312 15 6 11.8115 -6.4625 -0.0301 16 6 12.3896 -7.8543 -0.0362 17 1 11.7329 -8.7117 -0.0407 18 6 13.7566 -8.0329 -0.0369 19 7 14.5562 -6.9889 -0.0329 20 14 14.4731 -9.7581 -0.0451 21 1 14.0166 -10.4780 -1.2611 22 1 15.9560 -9.6782 -0.0453 23 1 14.0165 -10.4895 1.1639 24 6 2.1970 -1.1966 -0.0058 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5181 28 1 1.6565 2.1324 -0.0004 29 1 4.1176 2.1381 0.0098 30 1 5.3552 0.0102 0.0002 31 1 6.0278 -1.7576 -0.8990 32 1 6.0280 -1.7669 0.8810 33 1 5.9445 -4.2448 0.8688 34 1 5.9443 -4.2363 -0.9111 35 1 8.1428 -3.0886 -0.9050 36 1 8.1423 -3.0974 0.8749 37 1 10.3115 -4.4218 -0.0210 38 1 9.9486 -7.0818 0.8563 39 1 9.9486 -7.0733 -0.9237 40 1 12.1470 -5.9256 -0.9174 41 1 12.1464 -5.9343 0.8626 42 1 15.5181 -7.1146 -0.0338 43 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272975136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:45 Heat of formation + Delta-G solvation = -81.934163 kcal Electronic energy + Delta-G solvation = -21210.643437 eV Core-core repulsion = 17833.934544 eV Total energy + Delta-G solvation = -3376.708893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44597 -39.33484 -38.00789 -34.99917 -33.90292 -32.86181 -32.81952 -30.56702 -29.72441 -27.57652 -27.03926 -24.67361 -22.93641 -22.50028 -21.09278 -20.88837 -19.97936 -18.03514 -16.99357 -16.62871 -16.41617 -16.23085 -15.94910 -15.35942 -15.07313 -14.58717 -14.46441 -14.22264 -13.81012 -13.80075 -13.53669 -13.02654 -12.93570 -12.48647 -12.44481 -12.21675 -12.20185 -11.81209 -11.66570 -11.42426 -11.23203 -11.02744 -11.01544 -10.78587 -10.67293 -10.34268 -9.83988 -9.48931 -9.21948 -9.11244 -8.56387 -8.46695 -8.37406 -6.11004 -4.14035 0.99474 1.15338 2.83315 2.97150 3.30269 3.34070 3.37166 3.44002 3.72520 4.40157 4.46684 4.47631 4.68111 4.70996 4.73829 4.83338 4.90766 5.01114 5.09911 5.16927 5.18771 5.23100 5.26022 5.28922 5.39272 5.49185 5.57384 5.75515 5.90671 6.00173 6.11053 6.12582 6.26532 6.32288 6.32735 6.48435 6.71707 6.89407 7.17520 7.49094 7.59173 7.86818 7.98455 8.25770 8.62532 8.91691 9.50931 11.00490 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.060512 B = 0.001769 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.606794 B =15820.307677 C =16241.258649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.049 4.049 3 C -0.164 4.164 4 C -0.076 4.076 5 C -0.217 4.217 6 C 0.138 3.862 7 O -0.313 6.313 8 C 0.060 3.940 9 C -0.103 4.103 10 C -0.138 4.138 11 C 0.505 3.495 12 O -0.550 6.550 13 N -0.723 5.723 14 C 0.121 3.879 15 C 0.012 3.988 16 C -0.523 4.523 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.156 4.156 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.398 0.602 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.263 0.737 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.021 19.190 0.110 29.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.049 4.049 3 C -0.182 4.182 4 C -0.094 4.094 5 C -0.235 4.235 6 C 0.092 3.908 7 O -0.226 6.226 8 C -0.015 4.015 9 C -0.141 4.141 10 C -0.179 4.179 11 C 0.290 3.710 12 O -0.429 6.429 13 N -0.373 5.373 14 C -0.002 4.002 15 C -0.025 4.025 16 C -0.562 4.562 17 H 0.077 0.923 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.175 4.175 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.231 0.769 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -23.403 18.316 0.103 29.718 hybrid contribution 1.171 -0.293 0.006 1.207 sum -22.232 18.023 0.109 28.620 Atomic orbital electron populations 1.20817 0.90761 1.03007 1.02599 1.19714 0.96058 0.92281 0.96859 1.20935 0.94187 0.97515 1.05554 1.20935 0.94177 0.97418 0.96913 1.21285 1.00424 0.92268 1.09549 1.19028 0.91791 0.84810 0.95146 1.86085 1.20382 1.27951 1.88183 1.22888 0.77908 0.99244 1.01460 1.21219 0.93055 0.94378 1.05436 1.21530 0.95740 0.96035 1.04567 1.20442 0.82843 0.90946 0.76758 1.90689 1.59333 1.42582 1.50255 1.46346 1.06183 1.10988 1.73778 1.21724 0.96975 0.80670 1.00789 1.19324 0.87135 0.98219 0.97832 1.21020 0.91640 0.92010 1.51527 0.92298 1.24990 0.97141 0.97170 0.94939 1.69940 1.03678 1.29412 1.50273 0.86565 0.77775 0.84352 0.78794 1.20108 1.21224 1.20101 1.20326 0.90979 0.98697 1.07476 0.90860 0.91310 0.91267 0.86041 0.85800 0.85394 0.91832 0.91841 0.89943 0.89937 0.88769 0.88776 0.76865 0.92577 0.92573 0.95939 0.95940 0.92784 0.85211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.05 -0.40 5.88 -104.64 -0.62 -1.02 16 3 C -0.16 -1.27 9.70 -39.56 -0.38 -1.66 16 4 C -0.08 -0.61 10.04 -39.61 -0.40 -1.01 16 5 C -0.22 -1.97 9.04 -39.44 -0.36 -2.32 16 6 C 0.14 1.47 6.69 -39.22 -0.26 1.21 16 7 O -0.31 -3.61 10.14 -19.45 -0.20 -3.80 16 8 C 0.06 0.55 4.74 37.15 0.18 0.73 16 9 C -0.10 -1.14 4.87 -26.74 -0.13 -1.27 16 10 C -0.14 -1.46 5.70 -27.89 -0.16 -1.62 16 11 C 0.50 8.12 7.83 -10.98 -0.09 8.03 16 12 O -0.55 -11.14 15.98 5.56 0.09 -11.05 16 13 N -0.72 -12.18 5.56 -60.30 -0.33 -12.51 16 14 C 0.12 2.55 5.61 -4.05 -0.02 2.53 16 15 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 16 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 20 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 C -0.16 -1.53 9.64 -39.43 -0.38 -1.91 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 27 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 28 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 29 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 30 H 0.13 0.96 6.30 -52.48 -0.33 0.62 16 31 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 32 H 0.06 0.50 7.66 -51.92 -0.40 0.10 16 33 H 0.08 1.03 8.10 -51.93 -0.42 0.60 16 34 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.40 5.65 8.47 -40.82 -0.35 5.30 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -32.83 364.90 -8.96 -41.79 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -6.92 Total: 0.68 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -2.81 Total: -11.67 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.40 Total: -37.75 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.11 Total: -14.85 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.83 -8.96 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272975136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.145 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds