Wall clock time and date at job start Tue Mar 31 2020 06:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38286 * 119.97163 * 2 1 4 4 C 1.38246 * 120.10838 * 179.72962 * 3 2 1 5 5 C 1.38164 * 120.05483 * 0.54869 * 4 3 2 6 6 C 1.38704 * 119.94394 * 359.72272 * 5 4 3 7 7 O 1.35908 * 120.05440 * 179.97438 * 6 5 4 8 8 C 1.42903 * 117.00023 * 0.02562 * 7 6 5 9 9 C 1.52994 * 109.47313 * 179.97438 * 8 7 6 10 10 C 1.52992 * 109.47240 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.47231 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00029 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00203 * 179.97438 * 11 10 9 14 14 C 1.46491 * 120.00062 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47112 * 180.02562 * 14 13 11 16 16 C 1.50704 * 109.47253 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99673 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00035 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00246 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99893 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47501 * 60.00041 * 20 18 16 22 22 H 1.48504 * 109.47239 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47222 * 299.99549 * 20 18 16 24 24 C 1.38123 * 119.96761 * 180.27598 * 2 1 3 25 25 H 1.09001 * 109.46953 * 269.72253 * 1 2 3 26 26 H 1.09000 * 109.47318 * 29.71851 * 1 2 3 27 27 H 1.09000 * 109.47161 * 149.72481 * 1 2 3 28 28 H 1.08000 * 119.94258 * 359.97438 * 3 2 1 29 29 H 1.08003 * 119.97108 * 180.25440 * 4 3 2 30 30 H 1.08004 * 120.02622 * 179.75128 * 5 4 3 31 31 H 1.09000 * 109.46823 * 300.00313 * 8 7 6 32 32 H 1.09008 * 109.46511 * 59.99921 * 8 7 6 33 33 H 1.09003 * 109.47171 * 300.00390 * 9 8 7 34 34 H 1.09002 * 109.47269 * 59.99750 * 9 8 7 35 35 H 1.08998 * 109.47132 * 299.99619 * 10 9 8 36 36 H 1.08997 * 109.47536 * 60.00010 * 10 9 8 37 37 H 0.97003 * 119.99353 * 0.02562 * 13 11 10 38 38 H 1.09000 * 109.47483 * 299.99781 * 14 13 11 39 39 H 1.09000 * 109.47654 * 60.00122 * 14 13 11 40 40 H 1.08998 * 109.47125 * 299.99582 * 15 14 13 41 41 H 1.08997 * 109.47520 * 59.99959 * 15 14 13 42 42 H 0.97001 * 120.00124 * 180.02562 * 19 18 16 43 43 H 1.07997 * 120.03255 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 -0.0002 6 6 3.5846 -1.1958 -0.0058 7 8 4.2658 -2.3718 -0.0121 8 6 5.6928 -2.2950 -0.0118 9 6 6.2796 -3.7078 -0.0186 10 6 7.8073 -3.6256 -0.0178 11 6 8.3854 -5.0173 -0.0238 12 8 7.6480 -5.9802 -0.0289 13 7 9.7218 -5.1920 -0.0247 14 6 10.2837 -6.5448 -0.0312 15 6 11.8115 -6.4625 -0.0301 16 6 12.3896 -7.8543 -0.0362 17 1 11.7329 -8.7117 -0.0407 18 6 13.7566 -8.0329 -0.0369 19 7 14.5562 -6.9889 -0.0329 20 14 14.4731 -9.7581 -0.0451 21 1 14.0166 -10.4780 -1.2611 22 1 15.9560 -9.6782 -0.0453 23 1 14.0165 -10.4895 1.1639 24 6 2.1970 -1.1966 -0.0058 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3634 0.8925 -0.5094 27 1 -0.3633 -0.8875 -0.5181 28 1 1.6565 2.1324 -0.0004 29 1 4.1176 2.1381 0.0098 30 1 5.3552 0.0102 0.0002 31 1 6.0278 -1.7576 -0.8990 32 1 6.0280 -1.7669 0.8810 33 1 5.9445 -4.2448 0.8688 34 1 5.9443 -4.2363 -0.9111 35 1 8.1428 -3.0886 -0.9050 36 1 8.1423 -3.0974 0.8749 37 1 10.3115 -4.4218 -0.0210 38 1 9.9486 -7.0818 0.8563 39 1 9.9486 -7.0733 -0.9237 40 1 12.1470 -5.9256 -0.9174 41 1 12.1464 -5.9343 0.8626 42 1 15.5181 -7.1146 -0.0338 43 1 1.6570 -2.1318 -0.0099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272975136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:45 Heat of formation + Delta-G solvation = -101.894240 kcal Electronic energy + Delta-G solvation = -21211.508971 eV Core-core repulsion = 17833.934544 eV Total energy + Delta-G solvation = -3377.574426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.15033 -40.66153 -38.69836 -36.65879 -34.87782 -34.80056 -33.38611 -31.76473 -31.01270 -28.47593 -27.76394 -26.43231 -23.73241 -23.42153 -22.68384 -21.70203 -21.26035 -18.76994 -18.58468 -17.95974 -17.44848 -16.93582 -16.78689 -16.61076 -16.55570 -16.37606 -15.40740 -15.17622 -14.80192 -14.62346 -14.34218 -14.20103 -14.11928 -14.00773 -13.25959 -13.15869 -13.01734 -12.94426 -12.87617 -12.54342 -12.43676 -12.37981 -12.24799 -12.15201 -11.67578 -11.66382 -11.53889 -11.48480 -10.84075 -10.60579 -10.00719 -9.72752 -9.13127 -8.24750 -6.35265 0.37779 0.50494 1.41444 1.43417 1.51486 1.68428 2.02269 2.37282 2.56029 2.81425 3.09916 3.68887 3.89101 3.91494 3.92200 4.05783 4.18650 4.23578 4.38624 4.42137 4.42866 4.47855 4.50256 4.53560 4.59583 4.68544 4.83584 4.85198 4.88927 5.02557 5.04575 5.20085 5.25829 5.31268 5.39272 5.50099 5.51506 5.57936 5.67172 5.78304 5.89946 6.15958 6.49127 6.65778 6.77608 7.32009 7.34077 8.86628 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.060512 B = 0.001769 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.606794 B =15820.307677 C =16241.258649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.055 4.055 3 C -0.168 4.168 4 C -0.080 4.080 5 C -0.225 4.225 6 C 0.114 3.886 7 O -0.338 6.338 8 C 0.063 3.937 9 C -0.099 4.099 10 C -0.123 4.123 11 C 0.501 3.499 12 O -0.597 6.597 13 N -0.718 5.718 14 C 0.139 3.861 15 C 0.022 3.978 16 C -0.551 4.551 17 H 0.057 0.943 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.964 3.036 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.269 1.269 24 C -0.179 4.179 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.413 0.587 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.010 0.990 41 H 0.010 0.990 42 H 0.266 0.734 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.251 21.019 0.118 31.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.055 4.055 3 C -0.186 4.186 4 C -0.098 4.098 5 C -0.243 4.243 6 C 0.069 3.931 7 O -0.252 6.252 8 C -0.011 4.011 9 C -0.137 4.137 10 C -0.163 4.163 11 C 0.290 3.710 12 O -0.478 6.478 13 N -0.369 5.369 14 C 0.015 3.985 15 C -0.015 4.015 16 C -0.589 4.589 17 H 0.075 0.925 18 C -0.190 4.190 19 N -0.564 5.564 20 Si 0.788 3.212 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.194 1.194 24 C -0.198 4.198 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.162 0.838 29 H 0.166 0.834 30 H 0.162 0.838 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.249 0.751 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.075 0.925 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -23.637 20.182 0.111 31.082 hybrid contribution 1.183 -0.813 0.005 1.435 sum -22.455 19.369 0.116 29.655 Atomic orbital electron populations 1.20870 0.89074 1.03821 1.03327 1.20049 0.97435 0.91969 0.96092 1.21300 0.94520 0.98211 1.04611 1.21302 0.94523 0.98055 0.95940 1.21523 1.01345 0.92023 1.09441 1.19283 0.92195 0.85088 0.96541 1.86035 1.21484 1.29018 1.88704 1.22901 0.77107 0.97910 1.03231 1.21123 0.93645 0.95459 1.03471 1.21523 0.94734 0.92342 1.07682 1.21429 0.81883 0.92837 0.74892 1.90674 1.60221 1.44782 1.52117 1.46166 1.07055 1.09725 1.73996 1.21192 0.94784 0.82981 0.99555 1.19138 0.89231 0.96674 0.96475 1.21455 0.92312 0.93343 1.51797 0.92499 1.25844 0.97519 1.01292 0.94362 1.70039 1.04038 1.31482 1.50835 0.85517 0.77153 0.79420 0.79066 1.19444 1.20464 1.19430 1.20533 0.91210 0.99379 1.08647 0.90070 0.89820 0.91166 0.83775 0.83352 0.83850 0.89974 0.89981 0.92011 0.92006 0.85480 0.85487 0.75058 0.93859 0.93852 0.97146 0.97146 0.92516 0.85662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.01 71.24 0.71 -0.40 16 2 C -0.06 -0.86 5.88 -19.88 -0.12 -0.97 16 3 C -0.17 -2.27 9.70 22.28 0.22 -2.05 16 4 C -0.08 -1.09 10.04 22.25 0.22 -0.87 16 5 C -0.22 -3.70 9.04 22.36 0.20 -3.50 16 6 C 0.11 2.39 6.69 22.51 0.15 2.54 16 7 O -0.34 -7.80 10.14 -92.52 -0.94 -8.74 16 8 C 0.06 1.06 4.74 71.98 0.34 1.40 16 9 C -0.10 -2.12 4.87 30.59 0.15 -1.97 16 10 C -0.12 -2.30 5.70 29.85 0.17 -2.13 16 11 C 0.50 15.76 7.83 87.66 0.69 16.45 16 12 O -0.60 -24.58 15.98 -3.03 -0.05 -24.63 16 13 N -0.72 -23.73 5.56 -463.07 -2.57 -26.30 16 14 C 0.14 5.96 5.61 86.38 0.48 6.45 16 15 C 0.02 1.11 5.09 29.85 0.15 1.27 16 16 C -0.55 -30.83 9.11 25.60 0.23 -30.60 16 17 H 0.06 3.13 7.74 -2.91 -0.02 3.10 16 18 C 0.01 0.49 5.46 84.65 0.46 0.96 16 19 N -0.92 -53.82 13.29 21.44 0.28 -53.53 16 20 Si 0.96 43.56 29.54 68.60 2.03 45.58 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 24 C -0.18 -3.53 9.64 22.37 0.22 -3.32 16 25 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 27 H 0.07 0.66 8.08 -2.39 -0.02 0.64 16 28 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 29 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 30 H 0.14 1.77 6.30 -2.91 -0.02 1.75 16 31 H 0.08 1.07 7.66 -2.39 -0.02 1.05 16 32 H 0.08 1.07 7.66 -2.38 -0.02 1.05 16 33 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 34 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 35 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.41 11.12 8.47 -92.71 -0.79 10.33 16 38 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -72.45 364.90 3.24 -69.21 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.20 Total: 15.16 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 4.28 Total: -16.76 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -2.29 Total: -79.83 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.99 Total: -33.37 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -72.45 3.24 -69.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272975136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.682 kcal (2) G-P(sol) polarization free energy of solvation -72.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds