Wall clock time and date at job start Tue Mar 31 2020 06:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38260 * 119.94312 * 2 1 4 4 C 1.38149 * 120.04928 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.02372 * 180.02562 * 4 3 2 6 6 C 1.38730 * 119.94931 * 0.02562 * 4 3 2 7 7 O 1.35896 * 120.05861 * 180.02562 * 6 4 3 8 8 C 1.42905 * 117.00039 * 89.99683 * 7 6 4 9 9 C 1.50699 * 109.46972 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00041 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00169 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47364 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.47232 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99963 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99795 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99974 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99629 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47194 * 89.99658 * 18 16 14 20 20 H 1.48498 * 109.46846 * 209.99659 * 18 16 14 21 21 H 1.48500 * 109.47208 * 329.99114 * 18 16 14 22 22 C 1.38732 * 119.88445 * 0.27184 * 6 4 3 23 23 C 1.50700 * 120.02398 * 179.72122 * 22 6 4 24 24 C 1.38145 * 119.94666 * 359.43105 * 22 6 4 25 25 H 1.08995 * 109.47432 * 89.99450 * 1 2 3 26 26 H 1.08998 * 109.47163 * 209.99925 * 1 2 3 27 27 H 1.08999 * 109.46845 * 329.99414 * 1 2 3 28 28 H 1.08001 * 119.97642 * 0.02813 * 3 2 1 29 29 H 1.09001 * 109.46901 * 269.97262 * 5 4 3 30 30 H 1.09003 * 109.47267 * 29.97904 * 5 4 3 31 31 H 1.09008 * 109.46921 * 149.97760 * 5 4 3 32 32 H 1.09000 * 109.47187 * 300.00222 * 8 7 6 33 33 H 1.09001 * 109.46558 * 60.00270 * 8 7 6 34 34 H 0.96996 * 119.99844 * 359.97438 * 11 9 8 35 35 H 1.09004 * 109.46923 * 300.00119 * 12 11 9 36 36 H 1.09004 * 109.47042 * 59.99705 * 12 11 9 37 37 H 1.08992 * 109.47346 * 300.00533 * 13 12 11 38 38 H 1.09004 * 109.46785 * 60.00155 * 13 12 11 39 39 H 0.97002 * 119.99803 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.46980 * 90.00923 * 23 22 6 41 41 H 1.09006 * 109.47268 * 210.00138 * 23 22 6 42 42 H 1.08999 * 109.47428 * 330.00172 * 23 22 6 43 43 H 1.07997 * 119.97554 * 180.31015 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1980 0.0000 4 6 3.5786 1.2006 -0.0005 5 6 4.3303 2.5068 0.0000 6 6 4.2734 -0.0002 -0.0016 7 8 5.6324 -0.0002 -0.0016 8 6 6.2812 -0.0013 1.2717 9 6 7.7752 -0.0006 1.0742 10 8 8.2387 0.0012 -0.0466 11 7 8.5962 -0.0020 2.1430 12 6 10.0486 -0.0007 1.9510 13 6 10.7433 -0.0020 3.3142 14 6 12.2373 -0.0013 3.1167 15 1 12.6500 -0.0005 2.1187 16 6 13.0772 -0.0028 4.2102 17 7 12.5745 -0.0043 5.4255 18 14 14.9291 -0.0013 3.9653 19 1 15.4189 1.3991 3.9029 20 1 15.5791 -0.7030 5.1012 21 1 15.2613 -0.6990 2.6972 22 6 3.5785 -1.2009 -0.0079 23 6 4.3301 -2.5071 -0.0154 24 6 2.1971 -1.1982 -0.0011 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6558 2.1326 0.0005 29 1 4.5115 2.8222 -1.0275 30 1 3.7401 3.2654 0.5143 31 1 5.2830 2.3776 0.5138 32 1 5.9883 0.8882 1.8295 33 1 5.9882 -0.8918 1.8278 34 1 8.2255 -0.0030 3.0393 35 1 10.3420 -0.8896 1.3924 36 1 10.3409 0.8905 1.3955 37 1 10.4498 0.8869 3.8724 38 1 10.4510 -0.8930 3.8700 39 1 13.1654 -0.0050 6.1947 40 1 4.5117 -2.8277 1.0104 41 1 3.7397 -3.2631 -0.5331 42 1 5.2825 -2.3753 -0.5289 43 1 1.6557 -2.1327 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273003334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:49 Heat of formation + Delta-G solvation = -75.871489 kcal Electronic energy + Delta-G solvation = -22335.724972 eV Core-core repulsion = 18959.278977 eV Total energy + Delta-G solvation = -3376.445995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56647 -39.18778 -37.43221 -34.86605 -33.80180 -32.97962 -32.87101 -30.22843 -28.39712 -28.06880 -26.92275 -25.91800 -24.43895 -21.17832 -21.15747 -20.84461 -20.30029 -17.95215 -16.97397 -16.92590 -16.40691 -15.47161 -15.34647 -14.74526 -14.62570 -14.41514 -14.18952 -14.00104 -13.74060 -13.32792 -13.30489 -13.20948 -12.91726 -12.83000 -12.69598 -12.54306 -12.31661 -11.98755 -11.50312 -11.40931 -11.25960 -11.23101 -11.04787 -10.66028 -10.36191 -10.02383 -9.81372 -9.48520 -9.21140 -8.81412 -8.58879 -8.53717 -8.39095 -6.11447 -4.14302 0.92794 1.10527 2.90176 2.91591 3.28589 3.34748 3.38820 3.46927 4.12029 4.40912 4.50995 4.53115 4.57870 4.95602 4.99362 5.00314 5.06943 5.11250 5.23150 5.24383 5.25744 5.27857 5.40134 5.44365 5.50075 5.55447 5.62063 5.65362 5.93617 6.08701 6.19272 6.28698 6.29095 6.31473 6.38120 6.55951 6.70057 6.84207 7.38400 7.49646 7.58360 7.86652 7.93355 8.25109 8.57919 8.91610 9.50669 11.00117 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035713 B = 0.002436 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.849946 B =11490.764326 C =11661.235075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 C -0.117 4.117 4 C -0.091 4.091 5 C -0.113 4.113 6 C 0.085 3.915 7 O -0.304 6.304 8 C 0.047 3.953 9 C 0.507 3.493 10 O -0.528 6.528 11 N -0.720 5.720 12 C 0.124 3.876 13 C 0.013 3.987 14 C -0.522 4.522 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.090 4.090 23 C -0.117 4.117 24 C -0.117 4.117 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.125 0.875 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.398 0.602 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.127 0.003 -7.321 26.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 C -0.135 4.135 4 C -0.091 4.091 5 C -0.169 4.169 6 C 0.041 3.959 7 O -0.220 6.220 8 C -0.031 4.031 9 C 0.291 3.709 10 O -0.404 6.404 11 N -0.372 5.372 12 C 0.002 3.998 13 C -0.025 4.025 14 C -0.561 4.561 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.091 4.091 23 C -0.174 4.174 24 C -0.135 4.135 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.232 0.768 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -24.585 -0.001 -8.112 25.889 hybrid contribution 0.706 0.006 0.668 0.972 sum -23.879 0.005 -7.444 25.013 Atomic orbital electron populations 1.20778 0.91035 1.02786 1.02343 1.19912 0.96124 0.92999 0.99518 1.20785 0.92742 0.97745 1.02271 1.20246 0.93978 0.95221 0.99665 1.20732 1.00020 0.93187 1.02976 1.18380 0.82839 0.91575 1.03056 1.86122 1.14781 1.94265 1.26828 1.22483 0.91728 1.02851 0.86033 1.20035 0.87520 0.77751 0.85623 1.90717 1.77343 1.48615 1.23687 1.46219 1.08494 1.74272 1.08220 1.21760 0.75647 1.00980 1.01444 1.19330 0.95363 0.97899 0.89894 1.21048 0.90616 1.51391 0.92999 0.92202 1.25001 0.99226 0.94962 0.95128 1.69954 1.35255 1.50353 0.97739 0.86499 0.84928 0.78214 0.77850 1.20542 1.21166 1.19709 1.20243 0.93966 0.95223 0.99635 1.20760 1.00874 0.93201 1.02530 1.20795 0.92766 0.97737 1.02247 0.91135 0.91520 0.91520 0.85723 0.90655 0.91510 0.91223 0.90125 0.90131 0.76841 0.92397 0.92411 0.95886 0.95882 0.92827 0.91176 0.91369 0.90357 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.01 0.36 -0.32 16 2 C -0.09 -0.76 5.88 -104.60 -0.62 -1.38 16 3 C -0.12 -1.11 9.35 -39.61 -0.37 -1.48 16 4 C -0.09 -1.02 5.89 -104.47 -0.62 -1.64 16 5 C -0.11 -1.14 9.79 36.01 0.35 -0.79 16 6 C 0.09 1.09 5.67 -39.22 -0.22 0.86 16 7 O -0.30 -4.50 7.85 -39.33 -0.31 -4.81 16 8 C 0.05 0.61 6.17 36.01 0.22 0.84 16 9 C 0.51 8.72 7.91 -10.99 -0.09 8.63 16 10 O -0.53 -11.41 16.50 -14.35 -0.24 -11.65 16 11 N -0.72 -12.31 5.56 -60.29 -0.33 -12.64 16 12 C 0.12 2.60 5.61 -4.04 -0.02 2.58 16 13 C 0.01 0.31 5.09 -27.89 -0.14 0.16 16 14 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 15 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 18 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 22 C -0.09 -1.01 5.89 -104.47 -0.62 -1.63 16 23 C -0.12 -1.18 9.79 36.01 0.35 -0.83 16 24 C -0.12 -1.11 9.35 -39.60 -0.37 -1.48 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 27 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 28 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.07 0.78 6.33 -51.92 -0.33 0.45 16 32 H 0.08 0.88 7.26 -51.93 -0.38 0.50 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.40 5.69 8.47 -40.82 -0.35 5.35 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 42 H 0.08 0.94 7.53 -51.93 -0.39 0.55 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 364.26 15.07 5.49 5.49 Total: -1.00 -32.85 364.26 -8.75 -41.60 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.89 Total: 0.54 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -2.18 Total: -9.62 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.40 Total: -37.84 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.55 Total: -16.45 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.85 -8.75 -41.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273003334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.271 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds