Wall clock time and date at job start Tue Mar 31 2020 06:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38260 * 119.94312 * 2 1 4 4 C 1.38149 * 120.04928 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.02372 * 180.02562 * 4 3 2 6 6 C 1.38730 * 119.94931 * 0.02562 * 4 3 2 7 7 O 1.35896 * 120.05861 * 180.02562 * 6 4 3 8 8 C 1.42905 * 117.00039 * 89.99683 * 7 6 4 9 9 C 1.50699 * 109.46972 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00041 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 8 7 12 12 C 1.46500 * 120.00169 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47364 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.47232 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99963 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99795 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99974 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99629 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47194 * 89.99658 * 18 16 14 20 20 H 1.48498 * 109.46846 * 209.99659 * 18 16 14 21 21 H 1.48500 * 109.47208 * 329.99114 * 18 16 14 22 22 C 1.38732 * 119.88445 * 0.27184 * 6 4 3 23 23 C 1.50700 * 120.02398 * 179.72122 * 22 6 4 24 24 C 1.38145 * 119.94666 * 359.43105 * 22 6 4 25 25 H 1.08995 * 109.47432 * 89.99450 * 1 2 3 26 26 H 1.08998 * 109.47163 * 209.99925 * 1 2 3 27 27 H 1.08999 * 109.46845 * 329.99414 * 1 2 3 28 28 H 1.08001 * 119.97642 * 0.02813 * 3 2 1 29 29 H 1.09001 * 109.46901 * 269.97262 * 5 4 3 30 30 H 1.09003 * 109.47267 * 29.97904 * 5 4 3 31 31 H 1.09008 * 109.46921 * 149.97760 * 5 4 3 32 32 H 1.09000 * 109.47187 * 300.00222 * 8 7 6 33 33 H 1.09001 * 109.46558 * 60.00270 * 8 7 6 34 34 H 0.96996 * 119.99844 * 359.97438 * 11 9 8 35 35 H 1.09004 * 109.46923 * 300.00119 * 12 11 9 36 36 H 1.09004 * 109.47042 * 59.99705 * 12 11 9 37 37 H 1.08992 * 109.47346 * 300.00533 * 13 12 11 38 38 H 1.09004 * 109.46785 * 60.00155 * 13 12 11 39 39 H 0.97002 * 119.99803 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.46980 * 90.00923 * 23 22 6 41 41 H 1.09006 * 109.47268 * 210.00138 * 23 22 6 42 42 H 1.08999 * 109.47428 * 330.00172 * 23 22 6 43 43 H 1.07997 * 119.97554 * 180.31015 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1980 0.0000 4 6 3.5786 1.2006 -0.0005 5 6 4.3303 2.5068 0.0000 6 6 4.2734 -0.0002 -0.0016 7 8 5.6324 -0.0002 -0.0016 8 6 6.2812 -0.0013 1.2717 9 6 7.7752 -0.0006 1.0742 10 8 8.2387 0.0012 -0.0466 11 7 8.5962 -0.0020 2.1430 12 6 10.0486 -0.0007 1.9510 13 6 10.7433 -0.0020 3.3142 14 6 12.2373 -0.0013 3.1167 15 1 12.6500 -0.0005 2.1187 16 6 13.0772 -0.0028 4.2102 17 7 12.5745 -0.0043 5.4255 18 14 14.9291 -0.0013 3.9653 19 1 15.4189 1.3991 3.9029 20 1 15.5791 -0.7030 5.1012 21 1 15.2613 -0.6990 2.6972 22 6 3.5785 -1.2009 -0.0079 23 6 4.3301 -2.5071 -0.0154 24 6 2.1971 -1.1982 -0.0011 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6558 2.1326 0.0005 29 1 4.5115 2.8222 -1.0275 30 1 3.7401 3.2654 0.5143 31 1 5.2830 2.3776 0.5138 32 1 5.9883 0.8882 1.8295 33 1 5.9882 -0.8918 1.8278 34 1 8.2255 -0.0030 3.0393 35 1 10.3420 -0.8896 1.3924 36 1 10.3409 0.8905 1.3955 37 1 10.4498 0.8869 3.8724 38 1 10.4510 -0.8930 3.8700 39 1 13.1654 -0.0050 6.1947 40 1 4.5117 -2.8277 1.0104 41 1 3.7397 -3.2631 -0.5331 42 1 5.2825 -2.3753 -0.5289 43 1 1.6557 -2.1327 -0.0009 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273003334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:48 Heat of formation + Delta-G solvation = -94.749937 kcal Electronic energy + Delta-G solvation = -22336.543603 eV Core-core repulsion = 18959.278977 eV Total energy + Delta-G solvation = -3377.264626 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.48300 -40.51227 -38.40403 -36.59859 -34.85290 -34.56416 -33.68591 -31.95965 -29.64804 -28.80907 -27.65168 -26.97174 -26.11739 -22.98642 -21.94250 -21.81687 -21.56937 -18.94640 -18.51025 -18.19607 -17.84841 -16.82833 -16.62725 -16.48526 -15.72894 -15.43231 -15.39498 -14.96885 -14.79753 -14.30780 -14.30314 -14.07745 -14.03020 -13.92438 -13.77823 -13.55304 -13.24442 -13.23945 -12.95148 -12.73029 -12.54680 -12.26876 -12.21553 -12.13413 -11.98018 -11.68802 -11.46930 -10.95487 -10.87908 -10.61243 -10.09016 -9.56209 -9.31030 -8.24970 -6.35153 0.13957 0.35511 1.41674 1.41914 1.51203 1.53338 1.79089 2.39978 2.58175 3.07500 3.09900 3.70729 3.80171 3.81155 3.92408 4.06177 4.09707 4.34147 4.41543 4.45299 4.47335 4.51950 4.55704 4.69171 4.71065 4.71683 4.78062 4.83391 4.89511 4.97268 5.09898 5.22636 5.25078 5.32028 5.44373 5.46370 5.57052 5.57204 5.64427 5.77121 5.84966 6.15029 6.43762 6.59911 6.77854 7.18660 7.34056 8.86750 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035713 B = 0.002436 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.849946 B =11490.764326 C =11661.235075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.084 4.084 3 C -0.121 4.121 4 C -0.104 4.104 5 C -0.111 4.111 6 C 0.055 3.945 7 O -0.329 6.329 8 C 0.056 3.944 9 C 0.509 3.491 10 O -0.576 6.576 11 N -0.711 5.711 12 C 0.142 3.858 13 C 0.023 3.977 14 C -0.548 4.548 15 H 0.058 0.942 16 C 0.007 3.993 17 N -0.925 5.925 18 Si 0.964 3.036 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.103 4.103 23 C -0.114 4.114 24 C -0.121 4.121 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.147 0.853 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.414 0.586 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.011 0.989 38 H 0.011 0.989 39 H 0.266 0.734 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.005 -0.003 -7.111 27.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.084 4.084 3 C -0.139 4.139 4 C -0.104 4.104 5 C -0.168 4.168 6 C 0.012 3.988 7 O -0.245 6.245 8 C -0.021 4.021 9 C 0.295 3.705 10 O -0.455 6.455 11 N -0.364 5.364 12 C 0.018 3.982 13 C -0.014 4.014 14 C -0.586 4.586 15 H 0.076 0.924 16 C -0.192 4.192 17 N -0.565 5.565 18 Si 0.789 3.211 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.192 1.192 22 C -0.104 4.104 23 C -0.171 4.171 24 C -0.138 4.138 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.164 0.836 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.250 0.750 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.029 0.971 38 H 0.029 0.971 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.071 0.929 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -26.496 -0.006 -7.879 27.642 hybrid contribution 1.183 0.007 0.589 1.321 sum -25.313 0.001 -7.290 26.342 Atomic orbital electron populations 1.20842 0.88736 1.03961 1.03250 1.20315 0.97805 0.92520 0.97739 1.21081 0.92095 0.99102 1.01574 1.20434 0.94919 0.95006 1.00048 1.20733 0.99664 0.93605 1.02786 1.18647 0.81933 0.92829 1.05395 1.86086 1.16349 1.94601 1.27509 1.22422 0.88227 1.05135 0.86342 1.20734 0.89294 0.75977 0.84496 1.90691 1.78526 1.50745 1.25541 1.45981 1.06954 1.74082 1.09393 1.21259 0.77873 0.99948 0.99087 1.19136 0.94537 0.96587 0.91171 1.21464 0.92407 1.51592 0.93131 0.92388 1.25859 1.04051 0.94427 0.94815 1.70051 1.36991 1.50951 0.98486 0.85452 0.79133 0.78519 0.77993 1.19766 1.20468 1.19172 1.20433 0.94908 0.95018 1.00008 1.20739 0.99840 0.93499 1.02989 1.21087 0.92112 0.99091 1.01559 0.90210 0.90395 0.90392 0.83555 0.91138 0.89286 0.92706 0.87666 0.87654 0.74988 0.93481 0.93471 0.97054 0.97055 0.92511 0.90276 0.89588 0.92913 0.83562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 71.24 0.71 -0.25 16 2 C -0.08 -1.27 5.88 -19.85 -0.12 -1.39 16 3 C -0.12 -2.03 9.35 22.25 0.21 -1.82 16 4 C -0.10 -2.23 5.89 -19.77 -0.12 -2.35 16 5 C -0.11 -2.19 9.79 71.24 0.70 -1.49 16 6 C 0.06 1.38 5.67 22.51 0.13 1.51 16 7 O -0.33 -9.84 7.85 -73.35 -0.58 -10.42 16 8 C 0.06 1.44 6.17 71.24 0.44 1.87 16 9 C 0.51 17.67 7.91 87.66 0.69 18.37 16 10 O -0.58 -25.67 16.50 16.00 0.26 -25.41 16 11 N -0.71 -24.42 5.56 -463.05 -2.57 -26.99 16 12 C 0.14 6.11 5.61 86.38 0.48 6.59 16 13 C 0.02 1.16 5.09 29.85 0.15 1.31 16 14 C -0.55 -30.55 9.11 25.60 0.23 -30.31 16 15 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 16 C 0.01 0.41 5.46 84.66 0.46 0.87 16 17 N -0.93 -53.89 13.29 21.45 0.28 -53.60 16 18 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 C -0.10 -2.22 5.89 -19.77 -0.12 -2.33 16 23 C -0.11 -2.23 9.79 71.24 0.70 -1.53 16 24 C -0.12 -2.02 9.35 22.26 0.21 -1.82 16 25 H 0.08 0.58 8.14 -2.39 -0.02 0.57 16 26 H 0.08 0.52 8.08 -2.39 -0.02 0.50 16 27 H 0.08 0.52 8.08 -2.39 -0.02 0.50 16 28 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 31 H 0.05 1.22 6.33 -2.38 -0.02 1.20 16 32 H 0.11 2.18 7.26 -2.39 -0.02 2.16 16 33 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.41 11.63 8.47 -92.71 -0.79 10.84 16 35 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.09 1.31 8.09 -2.38 -0.02 1.29 16 42 H 0.05 1.29 7.53 -2.39 -0.02 1.28 16 43 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 Total: -1.00 -71.65 364.26 4.41 -67.24 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.21 Total: 16.30 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 4.77 Total: -12.75 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -2.29 Total: -80.59 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.31 Total: -35.83 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -71.65 4.41 -67.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273003334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.510 kcal (2) G-P(sol) polarization free energy of solvation -71.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds