Wall clock time and date at job start Tue Mar 31 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38289 * 119.93791 * 2 1 4 4 C 1.38125 * 120.05202 * 180.25765 * 3 2 1 5 5 C 1.38755 * 119.93999 * 359.48967 * 4 3 2 6 6 O 1.35906 * 120.05296 * 180.27973 * 5 4 3 7 7 C 1.42901 * 117.00155 * 359.97438 * 6 5 4 8 8 C 1.52991 * 109.47372 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.47416 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99659 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00105 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99831 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47004 * 180.02562 * 12 11 9 14 14 C 1.50707 * 109.46901 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99855 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99874 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99865 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00132 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47216 * 89.99662 * 18 16 14 20 20 H 1.48504 * 109.47054 * 209.99929 * 18 16 14 21 21 H 1.48504 * 109.46889 * 329.99253 * 18 16 14 22 22 C 1.38709 * 119.89505 * 0.25905 * 5 4 3 23 23 C 1.38167 * 119.93745 * 359.97438 * 22 5 4 24 24 C 1.50702 * 119.96727 * 180.02562 * 23 22 5 25 25 H 1.08995 * 109.47080 * 270.24804 * 1 2 3 26 26 H 1.08993 * 109.47243 * 30.25404 * 1 2 3 27 27 H 1.09001 * 109.46983 * 150.25353 * 1 2 3 28 28 H 1.07995 * 119.98087 * 0.02562 * 3 2 1 29 29 H 1.08002 * 120.03152 * 179.77429 * 4 3 2 30 30 H 1.09003 * 109.47208 * 300.00726 * 7 6 5 31 31 H 1.09006 * 109.47043 * 60.00389 * 7 6 5 32 32 H 1.09003 * 109.47447 * 300.00457 * 8 7 6 33 33 H 1.09003 * 109.47081 * 60.00580 * 8 7 6 34 34 H 0.97001 * 119.99730 * 359.97438 * 11 9 8 35 35 H 1.09006 * 109.46822 * 299.99264 * 12 11 9 36 36 H 1.08998 * 109.47720 * 59.99545 * 12 11 9 37 37 H 1.09003 * 109.46877 * 299.98801 * 13 12 11 38 38 H 1.08995 * 109.47635 * 59.99638 * 13 12 11 39 39 H 0.97000 * 119.99707 * 180.02562 * 17 16 14 40 40 H 1.07993 * 120.02876 * 180.02562 * 22 5 4 41 41 H 1.08996 * 109.47216 * 90.00423 * 24 23 22 42 42 H 1.09001 * 109.47177 * 210.00403 * 24 23 22 43 43 H 1.09001 * 109.47352 * 329.99926 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5784 1.2011 -0.0054 5 6 4.2734 0.0002 -0.0001 6 8 5.6324 0.0002 0.0004 7 6 6.2812 1.2735 -0.0053 8 6 7.7979 1.0731 -0.0045 9 6 8.4821 2.4159 -0.0099 10 8 7.8215 3.4330 -0.0135 11 7 9.8280 2.4865 -0.0107 12 6 10.4930 3.7918 -0.0154 13 6 12.0098 3.5914 -0.0160 14 6 12.6939 4.9342 -0.0214 15 1 12.1056 5.8399 -0.0246 16 6 14.0708 5.0065 -0.0234 17 7 14.7871 3.9035 -0.0200 18 14 14.9188 6.6709 -0.0309 19 1 15.1452 7.1174 1.3671 20 1 16.2230 6.5588 -0.7321 21 1 14.0623 7.6596 -0.7338 22 6 3.5788 -1.2005 0.0052 23 6 2.1971 -1.1978 0.0057 24 6 1.4418 -2.5019 0.0120 25 1 -0.3633 0.0044 1.0276 26 1 -0.3633 0.8876 -0.5177 27 1 -0.3633 -0.8923 -0.5099 28 1 1.6559 2.1329 0.0004 29 1 4.1171 2.1372 -0.0091 30 1 5.9885 1.8264 -0.8979 31 1 5.9880 1.8346 0.8820 32 1 8.0909 0.5200 0.8879 33 1 8.0908 0.5122 -0.8921 34 1 10.3563 1.6730 -0.0074 35 1 10.1998 4.3457 -0.9072 36 1 10.2005 4.3519 0.8728 37 1 12.3034 3.0374 0.8757 38 1 12.3021 3.0315 -0.9043 39 1 15.7558 3.9543 -0.0211 40 1 4.1175 -2.1365 0.0097 41 1 1.2600 -2.8115 1.0411 42 1 0.4894 -2.3726 -0.5022 43 1 2.0296 -3.2647 -0.4986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273085014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:39 Heat of formation + Delta-G solvation = -79.176073 kcal Electronic energy + Delta-G solvation = -21518.947359 eV Core-core repulsion = 18142.358066 eV Total energy + Delta-G solvation = -3376.589293 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.47518 -39.38861 -38.11410 -34.97674 -33.12604 -32.88741 -32.56422 -31.46271 -29.56767 -27.82789 -26.22872 -25.28736 -23.76915 -22.34659 -21.05300 -20.63601 -20.03010 -18.12926 -16.73684 -16.48933 -16.39763 -16.18832 -15.46499 -15.12028 -15.06873 -14.53794 -14.47411 -14.36126 -13.85708 -13.54554 -13.43863 -13.11074 -13.10435 -12.65180 -12.52718 -12.32216 -12.25727 -11.81258 -11.64261 -11.48191 -11.24739 -11.05977 -10.92400 -10.73106 -10.67026 -10.37774 -9.89855 -9.53493 -9.25311 -9.01185 -8.61001 -8.40609 -8.21139 -6.12146 -4.15247 1.10261 1.21643 2.80918 2.87392 3.27679 3.33924 3.37896 3.49819 3.82490 4.39805 4.50709 4.54090 4.68274 4.77083 4.84480 4.86540 4.94508 5.09173 5.12901 5.20122 5.24945 5.31850 5.37115 5.43480 5.51098 5.53876 5.60901 5.61764 5.78569 5.86030 6.12618 6.20102 6.27948 6.29262 6.41819 6.59419 6.68166 6.82700 7.25320 7.47321 7.57367 7.85238 7.91140 8.23462 8.52915 8.90596 9.49800 10.99372 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.054784 B = 0.001939 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.978801 B =14437.951242 C =14907.273170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.131 4.131 3 C -0.076 4.076 4 C -0.209 4.209 5 C 0.134 3.866 6 O -0.318 6.318 7 C 0.077 3.923 8 C -0.141 4.141 9 C 0.511 3.489 10 O -0.554 6.554 11 N -0.719 5.719 12 C 0.121 3.879 13 C 0.012 3.988 14 C -0.523 4.523 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.152 4.152 23 C -0.051 4.051 24 C -0.117 4.117 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.124 0.876 29 H 0.132 0.868 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.400 0.600 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.129 0.871 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.801 -13.048 0.085 28.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.131 4.131 3 C -0.094 4.094 4 C -0.227 4.227 5 C 0.089 3.911 6 O -0.232 6.232 7 C 0.001 3.999 8 C -0.182 4.182 9 C 0.296 3.704 10 O -0.433 6.433 11 N -0.368 5.368 12 C -0.001 4.001 13 C -0.026 4.026 14 C -0.561 4.561 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.725 3.275 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.171 4.171 23 C -0.051 4.051 24 C -0.173 4.173 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.142 0.858 29 H 0.150 0.850 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.234 0.766 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.147 0.853 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.920 -12.518 0.075 28.785 hybrid contribution 1.008 0.766 0.024 1.267 sum -24.912 -11.752 0.099 27.545 Atomic orbital electron populations 1.20773 0.91283 1.02602 1.02073 1.19651 0.96052 0.92522 1.04867 1.20822 0.93311 0.97595 0.97677 1.21359 0.95423 0.97497 1.08453 1.18946 0.82251 0.94036 0.95908 1.85970 1.16341 1.32383 1.88492 1.22447 0.91339 0.83052 1.03043 1.21491 0.93752 0.96976 1.05942 1.20185 0.83076 0.90302 0.76842 1.90692 1.64794 1.37089 1.50707 1.46308 1.05756 1.11418 1.73353 1.21759 0.95436 0.82053 1.00883 1.19336 0.87080 0.98236 0.97923 1.21045 0.91422 0.92198 1.51477 0.92241 1.25002 0.97526 0.96826 0.94949 1.69957 1.06006 1.26990 1.50283 0.86501 0.78874 0.83905 0.78210 1.20545 1.21141 1.19737 1.20255 0.93032 0.96322 1.07470 1.19506 0.92530 0.95079 0.98014 1.20867 1.00074 0.93850 1.02534 0.91515 0.91847 0.91373 0.85821 0.85047 0.91034 0.91031 0.87865 0.87858 0.76637 0.92456 0.92457 0.95879 0.95865 0.92816 0.85264 0.90927 0.90966 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 9.60 36.01 0.35 -0.35 16 2 C -0.13 -1.19 5.88 -104.60 -0.62 -1.80 16 3 C -0.08 -0.75 9.69 -39.60 -0.38 -1.13 16 4 C -0.21 -2.34 9.04 -39.43 -0.36 -2.70 16 5 C 0.13 1.60 6.69 -39.22 -0.26 1.33 16 6 O -0.32 -3.93 10.14 -19.44 -0.20 -4.12 16 7 C 0.08 0.93 4.03 37.15 0.15 1.08 16 8 C -0.14 -1.64 6.07 -27.88 -0.17 -1.81 16 9 C 0.51 8.16 7.83 -10.98 -0.09 8.07 16 10 O -0.55 -10.84 15.98 5.56 0.09 -10.76 16 11 N -0.72 -12.02 5.56 -60.29 -0.33 -12.36 16 12 C 0.12 2.52 5.61 -4.04 -0.02 2.50 16 13 C 0.01 0.29 5.09 -27.88 -0.14 0.14 16 14 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 18 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.15 -1.60 9.64 -39.43 -0.38 -1.98 16 23 C -0.05 -0.47 5.88 -104.65 -0.62 -1.08 16 24 C -0.12 -0.72 9.60 36.01 0.35 -0.38 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 27 H 0.07 0.35 5.94 -51.93 -0.31 0.05 16 28 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 29 H 0.13 1.43 6.30 -52.49 -0.33 1.10 16 30 H 0.07 0.89 7.62 -51.93 -0.40 0.49 16 31 H 0.07 0.89 7.62 -51.93 -0.40 0.49 16 32 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.40 5.69 8.47 -40.82 -0.35 5.35 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.36 5.94 -51.93 -0.31 0.06 16 43 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 LS Contribution 360.40 15.07 5.43 5.43 Total: -1.00 -31.92 360.40 -8.59 -40.51 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.69 Total: 1.52 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -2.60 Total: -11.28 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.40 Total: -37.55 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.11 Total: -14.88 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.92 -8.59 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273085014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.664 kcal (2) G-P(sol) polarization free energy of solvation -31.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds