Wall clock time and date at job start Tue Mar 31 2020 06:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38289 * 119.93791 * 2 1 4 4 C 1.38125 * 120.05202 * 180.25765 * 3 2 1 5 5 C 1.38755 * 119.93999 * 359.48967 * 4 3 2 6 6 O 1.35906 * 120.05296 * 180.27973 * 5 4 3 7 7 C 1.42901 * 117.00155 * 359.97438 * 6 5 4 8 8 C 1.52991 * 109.47372 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.47416 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99659 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00105 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99831 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47004 * 180.02562 * 12 11 9 14 14 C 1.50707 * 109.46901 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99855 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99874 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99865 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00132 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47216 * 89.99662 * 18 16 14 20 20 H 1.48504 * 109.47054 * 209.99929 * 18 16 14 21 21 H 1.48504 * 109.46889 * 329.99253 * 18 16 14 22 22 C 1.38709 * 119.89505 * 0.25905 * 5 4 3 23 23 C 1.38167 * 119.93745 * 359.97438 * 22 5 4 24 24 C 1.50702 * 119.96727 * 180.02562 * 23 22 5 25 25 H 1.08995 * 109.47080 * 270.24804 * 1 2 3 26 26 H 1.08993 * 109.47243 * 30.25404 * 1 2 3 27 27 H 1.09001 * 109.46983 * 150.25353 * 1 2 3 28 28 H 1.07995 * 119.98087 * 0.02562 * 3 2 1 29 29 H 1.08002 * 120.03152 * 179.77429 * 4 3 2 30 30 H 1.09003 * 109.47208 * 300.00726 * 7 6 5 31 31 H 1.09006 * 109.47043 * 60.00389 * 7 6 5 32 32 H 1.09003 * 109.47447 * 300.00457 * 8 7 6 33 33 H 1.09003 * 109.47081 * 60.00580 * 8 7 6 34 34 H 0.97001 * 119.99730 * 359.97438 * 11 9 8 35 35 H 1.09006 * 109.46822 * 299.99264 * 12 11 9 36 36 H 1.08998 * 109.47720 * 59.99545 * 12 11 9 37 37 H 1.09003 * 109.46877 * 299.98801 * 13 12 11 38 38 H 1.08995 * 109.47635 * 59.99638 * 13 12 11 39 39 H 0.97000 * 119.99707 * 180.02562 * 17 16 14 40 40 H 1.07993 * 120.02876 * 180.02562 * 22 5 4 41 41 H 1.08996 * 109.47216 * 90.00423 * 24 23 22 42 42 H 1.09001 * 109.47177 * 210.00403 * 24 23 22 43 43 H 1.09001 * 109.47352 * 329.99926 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5784 1.2011 -0.0054 5 6 4.2734 0.0002 -0.0001 6 8 5.6324 0.0002 0.0004 7 6 6.2812 1.2735 -0.0053 8 6 7.7979 1.0731 -0.0045 9 6 8.4821 2.4159 -0.0099 10 8 7.8215 3.4330 -0.0135 11 7 9.8280 2.4865 -0.0107 12 6 10.4930 3.7918 -0.0154 13 6 12.0098 3.5914 -0.0160 14 6 12.6939 4.9342 -0.0214 15 1 12.1056 5.8399 -0.0246 16 6 14.0708 5.0065 -0.0234 17 7 14.7871 3.9035 -0.0200 18 14 14.9188 6.6709 -0.0309 19 1 15.1452 7.1174 1.3671 20 1 16.2230 6.5588 -0.7321 21 1 14.0623 7.6596 -0.7338 22 6 3.5788 -1.2005 0.0052 23 6 2.1971 -1.1978 0.0057 24 6 1.4418 -2.5019 0.0120 25 1 -0.3633 0.0044 1.0276 26 1 -0.3633 0.8876 -0.5177 27 1 -0.3633 -0.8923 -0.5099 28 1 1.6559 2.1329 0.0004 29 1 4.1171 2.1372 -0.0091 30 1 5.9885 1.8264 -0.8979 31 1 5.9880 1.8346 0.8820 32 1 8.0909 0.5200 0.8879 33 1 8.0908 0.5122 -0.8921 34 1 10.3563 1.6730 -0.0074 35 1 10.1998 4.3457 -0.9072 36 1 10.2005 4.3519 0.8728 37 1 12.3034 3.0374 0.8757 38 1 12.3021 3.0315 -0.9043 39 1 15.7558 3.9543 -0.0211 40 1 4.1175 -2.1365 0.0097 41 1 1.2600 -2.8115 1.0411 42 1 0.4894 -2.3726 -0.5022 43 1 2.0296 -3.2647 -0.4986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273085014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:39 Heat of formation + Delta-G solvation = -98.142249 kcal Electronic energy + Delta-G solvation = -21519.769794 eV Core-core repulsion = 18142.358066 eV Total energy + Delta-G solvation = -3377.411728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.33759 -40.67250 -38.95796 -36.65628 -34.84296 -33.89645 -33.36398 -32.43158 -31.27840 -28.51559 -27.07586 -26.78000 -25.05743 -23.15793 -22.78815 -21.58777 -21.22346 -19.07747 -18.54268 -17.63985 -17.50015 -17.26989 -16.60166 -16.39694 -16.37774 -16.19352 -15.27397 -15.20419 -14.88706 -14.65139 -14.52228 -14.27971 -14.14236 -13.72170 -13.54540 -13.26455 -13.22237 -12.94588 -12.79315 -12.65408 -12.53065 -12.46762 -12.24225 -12.07537 -11.69885 -11.67563 -11.58669 -11.48111 -10.94685 -10.61467 -10.05731 -9.75240 -8.99429 -8.25155 -6.35588 0.34519 0.44227 1.41298 1.41567 1.52937 1.57260 1.77981 2.38101 2.64228 2.73833 3.09677 3.58843 3.85117 3.88073 3.89947 4.01038 4.07685 4.23999 4.35088 4.35993 4.42020 4.47210 4.52737 4.69474 4.70483 4.76114 4.82808 4.84424 4.84581 4.96412 5.03310 5.21820 5.23568 5.26577 5.40141 5.45249 5.47338 5.57278 5.72788 5.77523 5.88743 6.14951 6.38897 6.56853 6.77683 7.20893 7.33799 8.86510 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.054784 B = 0.001939 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.978801 B =14437.951242 C =14907.273170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.134 4.134 3 C -0.086 4.086 4 C -0.225 4.225 5 C 0.108 3.892 6 O -0.323 6.323 7 C 0.081 3.919 8 C -0.127 4.127 9 C 0.512 3.488 10 O -0.591 6.591 11 N -0.714 5.714 12 C 0.140 3.860 13 C 0.021 3.979 14 C -0.548 4.548 15 H 0.058 0.942 16 C 0.007 3.993 17 N -0.925 5.925 18 Si 0.965 3.035 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.163 4.163 23 C -0.056 4.056 24 C -0.116 4.116 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.139 0.861 29 H 0.125 0.875 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.414 0.586 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.266 0.734 40 H 0.138 0.862 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.178 -13.855 0.091 30.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.135 4.135 3 C -0.104 4.104 4 C -0.244 4.244 5 C 0.063 3.937 6 O -0.237 6.237 7 C 0.006 3.994 8 C -0.167 4.167 9 C 0.300 3.700 10 O -0.473 6.473 11 N -0.365 5.365 12 C 0.016 3.984 13 C -0.017 4.017 14 C -0.586 4.586 15 H 0.077 0.923 16 C -0.192 4.192 17 N -0.565 5.565 18 Si 0.789 3.211 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.181 4.181 23 C -0.056 4.056 24 C -0.172 4.172 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.157 0.843 29 H 0.143 0.857 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.250 0.750 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.075 0.925 40 H 0.156 0.844 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -27.310 -13.358 0.082 30.402 hybrid contribution 1.343 0.971 0.024 1.658 sum -25.967 -12.387 0.107 28.770 Atomic orbital electron populations 1.20837 0.89110 1.03704 1.02967 1.20059 0.97720 0.92159 1.03528 1.21100 0.92916 0.98877 0.97518 1.21441 0.96270 0.97205 1.09442 1.19219 0.82081 0.94884 0.97506 1.85928 1.16863 1.32007 1.88921 1.22314 0.91673 0.83146 1.02294 1.21403 0.92791 0.94255 1.08226 1.20858 0.82363 0.91543 0.75224 1.90679 1.65435 1.38963 1.52202 1.46108 1.06355 1.10446 1.73618 1.21239 0.93386 0.83896 0.99896 1.19153 0.89254 0.96745 0.96501 1.21476 0.92174 0.93404 1.51585 0.92340 1.25869 0.98269 1.00625 0.94430 1.70057 1.06407 1.29080 1.50953 0.85448 0.77761 0.79349 0.78507 1.19781 1.20505 1.19128 1.20512 0.93860 0.96184 1.07560 1.19915 0.92253 0.96569 0.96844 1.20938 1.00409 0.92335 1.03490 0.90590 0.91156 0.89941 0.84307 0.85671 0.91907 0.91903 0.85468 0.85462 0.74993 0.93487 0.93457 0.97170 0.97165 0.92540 0.84399 0.89894 0.89502 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.60 71.24 0.68 -0.43 16 2 C -0.13 -2.24 5.88 -19.85 -0.12 -2.36 16 3 C -0.09 -1.65 9.69 22.25 0.22 -1.43 16 4 C -0.22 -5.15 9.04 22.37 0.20 -4.95 16 5 C 0.11 2.58 6.69 22.51 0.15 2.73 16 6 O -0.32 -7.88 10.14 -92.49 -0.94 -8.82 16 7 C 0.08 1.96 4.03 71.98 0.29 2.25 16 8 C -0.13 -2.77 6.07 29.85 0.18 -2.59 16 9 C 0.51 16.11 7.83 87.66 0.69 16.79 16 10 O -0.59 -23.39 15.98 -3.04 -0.05 -23.44 16 11 N -0.71 -23.60 5.56 -463.06 -2.57 -26.17 16 12 C 0.14 5.89 5.61 86.38 0.48 6.38 16 13 C 0.02 1.04 5.09 29.85 0.15 1.19 16 14 C -0.55 -30.47 9.11 25.60 0.23 -30.24 16 15 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 16 C 0.01 0.39 5.46 84.65 0.46 0.85 16 17 N -0.93 -53.96 13.29 21.45 0.28 -53.68 16 18 Si 0.96 43.48 29.54 68.60 2.03 45.51 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 22 C -0.16 -3.31 9.64 22.37 0.22 -3.09 16 23 C -0.06 -0.94 5.88 -19.88 -0.12 -1.05 16 24 C -0.12 -1.14 9.60 71.24 0.68 -0.46 16 25 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.63 8.09 -2.39 -0.02 0.61 16 27 H 0.08 0.61 5.94 -2.39 -0.01 0.59 16 28 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 29 H 0.13 2.89 6.30 -2.91 -0.02 2.88 16 30 H 0.06 1.60 7.62 -2.39 -0.02 1.58 16 31 H 0.06 1.60 7.62 -2.38 -0.02 1.58 16 32 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.41 11.40 8.47 -92.71 -0.79 10.61 16 35 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 40 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.09 0.61 5.94 -2.39 -0.01 0.59 16 43 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 Total: -1.00 -68.76 360.40 3.38 -65.38 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.22 Total: 17.64 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 4.41 Total: -16.41 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -2.29 Total: -79.85 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.99 Total: -32.26 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -68.76 3.38 -65.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273085014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.764 kcal (2) G-P(sol) polarization free energy of solvation -68.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds